| Literature DB >> 35923199 |
Chen Jin1, Rui Li2, Tuo Deng3,4, Zixia Lin3,4, Haoqi Li1, Yan Yang1, Qing Su1, Jingxian Wang1, Yi Yang1, Juejin Wang1, Gang Chen3,4, Yi Wang1.
Abstract
Background: Observational studies have revealed that dried fruit intake may be associated with cancer incidence; however, confounding factors make the results prone to be disturbed. Therefore, we conducted a two-sample Mendelian randomization (MR) study to explore the causal relationship between dried fruit intake and 11 site-specific cancers. Materials and methods: Forty-three single nucleoside polymers (SNPs) with robust genome-wide association study (GWAS) evidence, strongly correlated with dried fruit intake, were used as instrumental variables (IVs) in this study. The summary-level genetic datasets of site-specific cancers were obtained from the Oncoarray oral cavity and oropharyngeal cancer consortium, International Lung Cancer Consortium, Breast Cancer Association Consortium (BCAC), Ovarian Cancer Association Consortium, PanScan1, and GWAS of other scholars. We analyzed the causality between dried fruit intake and 11 site-specific cancers using the inverse-variance-weighted (IVW) and weighted median (WM) methods. For the results of the MR analysis, Cochran's Q test was used to check for heterogeneity, and multiplicative random effects were used to evaluate the heterogeneity further. Gene pleiotropy was tested using MR-Egger regression and MR-PRESSO methods. In addition, the main results of this study were validated by using the summary statistical data from the FinnGen and UK Biobank databases, and adjusted body mass index (BMI), years of education, fresh fruit intake, and vitamin C using multivariable MR analysis to ensure the stability of the research results.Entities:
Keywords: Mendelian randomization; causal relationship; dried fruit intake; incidence risk; site-specific cancers
Year: 2022 PMID: 35923199 PMCID: PMC9339715 DOI: 10.3389/fnut.2022.899137
Source DB: PubMed Journal: Front Nutr ISSN: 2296-861X
FIGURE 1Directed acyclic graph of Mendelian randomization (MR) framework showing the hypothesis of dried fruit intake on site-specific cancers, the dotted line indicates that there has pleiotropic or direct causal relationship between exposure and outcome.
FIGURE 2Manhattan plot of 43 SNPs identified as instrumental variables (IVs) from exposure dataset. SNP, single nucleotide polymorphism.
FIGURE 3Forest plot of two-sample Mendelian randomization (MR) estimation of the association between dried fruit intake and cancer risk. No. of SNPs, number of single nucleotide polymorphisms; CI, confidence interval.
Two-sample Mendelian randomization (MR) analyses of the association between dried fruit intake and eleven site-specific cancers.
| Outcome | IVW method | WM method | ||||
| OR | 95% CI of OR | OR | 95% CI of OR | |||
| Oral cavity and pharyngeal cancer | 0.1732 | (0.0433, 0.6922) |
| 0.2656 | (0.0379, 1.8616) | 0.1821 |
| Lung cancer | 0.3299 | (0.1695, 0.6420) |
| 0.3597 | (0.1585, 0.8160) |
|
| Squamous cell lung cancer | 0.2300 | (0.0884, 0.5986) |
| 0.1794 | (0.0550, 0.5848) |
|
| Breast cancer | 0.4693 | (0.3261, 0.6753) |
| 0.3520 | (0.2247, 0.5512) |
|
| Ovarian cancer | 0.6028 | (0.3960, 0.9177) |
| 0.7575 | (0.4363, 1.3153) | 0.3239 |
| Pancreatic cancer | 0.0274 | (0.0011, 0.6784) |
| 0.0128 | (0.0002, 0.9969) |
|
| Cervical cancer | 0.9947 | (0.9897,0.9998) |
| 0.3045 | (0.1731, 1.7297) | 0.3045 |
| Lung adenocarcinoma | 0.7079 | (0.2976, 1.6831) | 0.4342 | 1.2855 | (0.6510, 2.5385) | 0.4694 |
| Endometrial cancer | 0.9586 | (0.5679, 1.6180) | 0.8742 | 0.1525 | (3.32 × 10–5, 699.9797) | 0.6620 |
| Thyroid cancer | 0.1854 | (0.0001, 195.8003) | 0.6352 | 1.3370 | (0.9383, 1.9048) | 0.1080 |
| Prostate cancer | 1.1424 | (0.7498, 1.7406) | 0.5354 | 1.3370 | (0.9383, 1.9048) | 0.1080 |
| Bladder cancer | 1.0003 | (0.9956,1.0050) | 0.8996 | 1.0013 | (0.9953,1.0073) | 0.6756 |
| Brain cancer | 1.0003 | (0.9972,1.0035) | 0.8164 | 1.0003 | (0.9961,1.0045) | 0.8786 |
OR, odds ratios; 95% CI, 95% confidence interval; IVW, inverse-variance-weighted; WM, weighted median.
*Indicate P < 0.05. The bold values represent the statistically significant P-values.
Horizontal pleiotropic test between dried fruit intake and eleven site-specific cancers.
| Outcome | Horizontal pleiotropy test | MR-PRESSO | |||
| Intercept |
| DT | |||
| Oral cavity/pharyngeal cancer | 0.041 | 0.0388 | 0.2976 | 0.65 | |
| Lung cancer | −0.0095 | 0.0187 | 0.6153 | 0.005 | 0.686 |
| Squamous cell lung cancer | −0.0268 | 0.0265 | 0.3199 | 0.046 | 0.757 |
| Breast cancer | −0.0103 | 0.0101 | 0.3132 | 0.013 | 0.633 |
| Ovarian cancer | 0.0118 | 0.0116 | 0.3145 | 0.205 | |
| Pancreatic cancer | 0.1324 | 0.1593 | 0.4377 | 0.563 | |
| Cervical cancer | −0.0001 | 0.0001 | 0.4277 | 0.461 | |
| Lung adenocarcinoma | −0.0085 | 0.0244 | 0.7263 | 0.18 | |
| Endometrial cancer | 0.0159 | 0.0146 | 0.2847 | 0.038 | 0.202 |
| Thyroid cancer | 0.1141 | 0.2848 | 0.7051 | 0.305 | |
| Prostate cancer | 0.0148 | 0.0117 | 0.2134 | <0.001 | 0.452 |
| Bladder cancer | −0.00001 | 0.0001 | 0.8845 | 0.067 | |
| Brain cancer | 0.00004 | 0.0001 | 0.6709 | 0.157 | |
SE, standard error; DT, distortion test.
Heterogeneity test between dried fruit intake and eleven site-specific cancers.
| Outcome and method | Cochran’s | Multiplicative random effects | ||||
|
| Beta |
| ||||
| Oral cavity/pharyngeal cancer | ||||||
| MR-Egger | 28.012 | 32 | 0.6688 | |||
| IVW | 29.1333 | 33 | 0.6602 | |||
| Lung cancer | −1.1091 | 0.3397 | 0.0011 | |||
| MR-Egger | 62.9339 | 37 | 0.0049 | |||
| IVW | 63.3708 | 38 | 0.006 | |||
| Squamous cell lung cancer | −1.4697 | 0.488 | 0.0026 | |||
| MR-Egger | 54.303 | 37 | 0.033 | |||
| IVW | 55.7951 | 38 | 0.0313 | |||
| Breast cancer | −0.7566 | 0.1857 | 4.62 × 10–5 | |||
| MR-Egger | 61.4347 | 39 | 0.0124 | |||
| IVW | 63.0793 | 40 | 0.0114 | |||
| Ovarian cancer | ||||||
| MR-Egger | 45.9324 | 38 | 0.1765 | |||
| IVW | 47.1886 | 39 | 0.1727 | |||
| Pancreatic cancer | ||||||
| MR-Egger | 5.6025 | 6 | 0.4692 | |||
| IVW | 6.2934 | 7 | 0.5059 | |||
| Cervical cancer | ||||||
| MR-Egger | 36.2438 | 35 | 0.4104 | |||
| IVW | 36.9106 | 36 | 0.4266 | |||
| Lung adenocarcinoma | ||||||
| MR-Egger | 45.6275 | 37 | 0.1562 | |||
| IVW | 45.7808 | 38 | 0.1805 | |||
| Endometrial cancer | −0.0423 | 0.2671 | 0.8742 | |||
| MR-Egger | 56.3945 | 39 | 0.0353 | |||
| IVW | 58.0962 | 40 | 0.032 | |||
| Thyroid cancer | ||||||
| MR-Egger | 7.2731 | 5 | 0.2011 | |||
| IVW | 7.5067 | 6 | 0.2765 | |||
| Prostate cancer | 0.1331 | 0.2148 | 0.5354 | |||
| MR-Egger | 128.1553 | 39 | 1.9813 × 10–11 | |||
| IVW | 133.4129 | 40 | 5.5721 × 10–12 | |||
| Bladder cancer | ||||||
| MR-Egger | 48.6025 | 35 | 0.063 | |||
| IVW | 48.6322 | 36 | 0.0778 | |||
| Brain cancer | ||||||
| MR-Egger | 45.3404 | 35 | 0.1132 | |||
| IVW | 45.5783 | 36 | 0.1316 | |||
Q, Cochran’s Q statistic; df, degrees of freedom; SE, standard error; IVW, inverse-variance-weighted.
FIGURE 4Forest plots of multivariable Mendelian randomization (MR) in (A) lung cancer, (B) squamous cell lung cancer, and (C) breast cancer. Adjusted for fresh fruit intake, vitamin C, body mass index, years of education or fresh fruit intake, vitamin C, body mass index, and years of education.
FIGURE 5Forest plot of two-sample Mendelian randomization (MR) estimation of the association between dried fruit intake and cancer risk in validation datasets. No. of SNPs, number of single nucleotide polymorphisms; CI, confidence interval.