Literature DB >> 35921436

Trend estimation and short-term forecasting of COVID-19 cases and deaths worldwide.

Ekaterina Krymova1, Benjamín Béjar1, Dorina Thanou2, Tao Sun1, Elisa Manetti3, Gavin Lee1, Kristen Namigai3, Christine Choirat1, Antoine Flahault3, Guillaume Obozinski1.   

Abstract

Since the beginning of the COVID-19 pandemic, many dashboards have emerged as useful tools to monitor its evolution, inform the public, and assist governments in decision-making. Here, we present a globally applicable method, integrated in a daily updated dashboard that provides an estimate of the trend in the evolution of the number of cases and deaths from reported data of more than 200 countries and territories, as well as 7-d forecasts. One of the significant difficulties in managing a quickly propagating epidemic is that the details of the dynamic needed to forecast its evolution are obscured by the delays in the identification of cases and deaths and by irregular reporting. Our forecasting methodology substantially relies on estimating the underlying trend in the observed time series using robust seasonal trend decomposition techniques. This allows us to obtain forecasts with simple yet effective extrapolation methods in linear or log scale. We present the results of an assessment of our forecasting methodology and discuss its application to the production of global and regional risk maps.

Entities:  

Keywords:  COVID-19; forecasting; seasonal decomposition; trend estimation

Mesh:

Year:  2022        PMID: 35921436      PMCID: PMC9371653          DOI: 10.1073/pnas.2112656119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  18 in total

1.  Predicting an epidemic trajectory is difficult.

Authors:  Claus O Wilke; Carl T Bergstrom
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-03       Impact factor: 11.205

2.  Predictive Mathematical Models of the COVID-19 Pandemic: Underlying Principles and Value of Projections.

Authors:  Nicholas P Jewell; Joseph A Lewnard; Britta L Jewell
Journal:  JAMA       Date:  2020-05-19       Impact factor: 56.272

3.  Predictive performance of international COVID-19 mortality forecasting models.

Authors:  Joseph Friedman; Patrick Liu; Christopher E Troeger; Austin Carter; Robert C Reiner; Ryan M Barber; James Collins; Stephen S Lim; David M Pigott; Theo Vos; Simon I Hay; Christopher J L Murray; Emmanuela Gakidou
Journal:  Nat Commun       Date:  2021-05-10       Impact factor: 14.919

4.  Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States.

Authors:  Estee Y Cramer; Evan L Ray; Velma K Lopez; Johannes Bracher; Andrea Brennen; Alvaro J Castro Rivadeneira; Aaron Gerding; Tilmann Gneiting; Katie H House; Yuxin Huang; Dasuni Jayawardena; Abdul H Kanji; Ayush Khandelwal; Khoa Le; Anja Mühlemann; Jarad Niemi; Apurv Shah; Ariane Stark; Yijin Wang; Nutcha Wattanachit; Martha W Zorn; Youyang Gu; Sansiddh Jain; Nayana Bannur; Ayush Deva; Mihir Kulkarni; Srujana Merugu; Alpan Raval; Siddhant Shingi; Avtansh Tiwari; Jerome White; Neil F Abernethy; Spencer Woody; Maytal Dahan; Spencer Fox; Kelly Gaither; Michael Lachmann; Lauren Ancel Meyers; James G Scott; Mauricio Tec; Ajitesh Srivastava; Glover E George; Jeffrey C Cegan; Ian D Dettwiller; William P England; Matthew W Farthing; Robert H Hunter; Brandon Lafferty; Igor Linkov; Michael L Mayo; Matthew D Parno; Michael A Rowland; Benjamin D Trump; Yanli Zhang-James; Samuel Chen; Stephen V Faraone; Jonathan Hess; Christopher P Morley; Asif Salekin; Dongliang Wang; Sabrina M Corsetti; Thomas M Baer; Marisa C Eisenberg; Karl Falb; Yitao Huang; Emily T Martin; Ella McCauley; Robert L Myers; Tom Schwarz; Daniel Sheldon; Graham Casey Gibson; Rose Yu; Liyao Gao; Yian Ma; Dongxia Wu; Xifeng Yan; Xiaoyong Jin; Yu-Xiang Wang; YangQuan Chen; Lihong Guo; Yanting Zhao; Quanquan Gu; Jinghui Chen; Lingxiao Wang; Pan Xu; Weitong Zhang; Difan Zou; Hannah Biegel; Joceline Lega; Steve McConnell; V P Nagraj; Stephanie L Guertin; Christopher Hulme-Lowe; Stephen D Turner; Yunfeng Shi; Xuegang Ban; Robert Walraven; Qi-Jun Hong; Stanley Kong; Axel van de Walle; James A Turtle; Michal Ben-Nun; Steven Riley; Pete Riley; Ugur Koyluoglu; David DesRoches; Pedro Forli; Bruce Hamory; Christina Kyriakides; Helen Leis; John Milliken; Michael Moloney; James Morgan; Ninad Nirgudkar; Gokce Ozcan; Noah Piwonka; Matt Ravi; Chris Schrader; Elizabeth Shakhnovich; Daniel Siegel; Ryan Spatz; Chris Stiefeling; Barrie Wilkinson; Alexander Wong; Sean Cavany; Guido España; Sean Moore; Rachel Oidtman; Alex Perkins; David Kraus; Andrea Kraus; Zhifeng Gao; Jiang Bian; Wei Cao; Juan Lavista Ferres; Chaozhuo Li; Tie-Yan Liu; Xing Xie; Shun Zhang; Shun Zheng; Alessandro Vespignani; Matteo Chinazzi; Jessica T Davis; Kunpeng Mu; Ana Pastore Y Piontti; Xinyue Xiong; Andrew Zheng; Jackie Baek; Vivek Farias; Andreea Georgescu; Retsef Levi; Deeksha Sinha; Joshua Wilde; Georgia Perakis; Mohammed Amine Bennouna; David Nze-Ndong; Divya Singhvi; Ioannis Spantidakis; Leann Thayaparan; Asterios Tsiourvas; Arnab Sarker; Ali Jadbabaie; Devavrat Shah; Nicolas Della Penna; Leo A Celi; Saketh Sundar; Russ Wolfinger; Dave Osthus; Lauren Castro; Geoffrey Fairchild; Isaac Michaud; Dean Karlen; Matt Kinsey; Luke C Mullany; Kaitlin Rainwater-Lovett; Lauren Shin; Katharine Tallaksen; Shelby Wilson; Elizabeth C Lee; Juan Dent; Kyra H Grantz; Alison L Hill; Joshua Kaminsky; Kathryn Kaminsky; Lindsay T Keegan; Stephen A Lauer; Joseph C Lemaitre; Justin Lessler; Hannah R Meredith; Javier Perez-Saez; Sam Shah; Claire P Smith; Shaun A Truelove; Josh Wills; Maximilian Marshall; Lauren Gardner; Kristen Nixon; John C Burant; Lily Wang; Lei Gao; Zhiling Gu; Myungjin Kim; Xinyi Li; Guannan Wang; Yueying Wang; Shan Yu; Robert C Reiner; Ryan Barber; Emmanuela Gakidou; Simon I Hay; Steve Lim; Chris Murray; David Pigott; Heidi L Gurung; Prasith Baccam; Steven A Stage; Bradley T Suchoski; B Aditya Prakash; Bijaya Adhikari; Jiaming Cui; Alexander Rodríguez; Anika Tabassum; Jiajia Xie; Pinar Keskinocak; John Asplund; Arden Baxter; Buse Eylul Oruc; Nicoleta Serban; Sercan O Arik; Mike Dusenberry; Arkady Epshteyn; Elli Kanal; Long T Le; Chun-Liang Li; Tomas Pfister; Dario Sava; Rajarishi Sinha; Thomas Tsai; Nate Yoder; Jinsung Yoon; Leyou Zhang; Sam Abbott; Nikos I Bosse; Sebastian Funk; Joel Hellewell; Sophie R Meakin; Katharine Sherratt; Mingyuan Zhou; Rahi Kalantari; Teresa K Yamana; Sen Pei; Jeffrey Shaman; Michael L Li; Dimitris Bertsimas; Omar Skali Lami; Saksham Soni; Hamza Tazi Bouardi; Turgay Ayer; Madeline Adee; Jagpreet Chhatwal; Ozden O Dalgic; Mary A Ladd; Benjamin P Linas; Peter Mueller; Jade Xiao; Yuanjia Wang; Qinxia Wang; Shanghong Xie; Donglin Zeng; Alden Green; Jacob Bien; Logan Brooks; Addison J Hu; Maria Jahja; Daniel McDonald; Balasubramanian Narasimhan; Collin Politsch; Samyak Rajanala; Aaron Rumack; Noah Simon; Ryan J Tibshirani; Rob Tibshirani; Valerie Ventura; Larry Wasserman; Eamon B O'Dea; John M Drake; Robert Pagano; Quoc T Tran; Lam Si Tung Ho; Huong Huynh; Jo W Walker; Rachel B Slayton; Michael A Johansson; Matthew Biggerstaff; Nicholas G Reich
Journal:  Proc Natl Acad Sci U S A       Date:  2022-04-08       Impact factor: 12.779

5.  Evaluating epidemic forecasts in an interval format.

Authors:  Johannes Bracher; Evan L Ray; Tilmann Gneiting; Nicholas G Reich
Journal:  PLoS Comput Biol       Date:  2021-02-12       Impact factor: 4.779

6.  A scenario modeling pipeline for COVID-19 emergency planning.

Authors:  Joseph C Lemaitre; Kyra H Grantz; Joshua Kaminsky; Hannah R Meredith; Shaun A Truelove; Stephen A Lauer; Lindsay T Keegan; Sam Shah; Josh Wills; Kathryn Kaminsky; Javier Perez-Saez; Justin Lessler; Elizabeth C Lee
Journal:  Sci Rep       Date:  2021-04-06       Impact factor: 4.379

7.  Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2.

Authors:  Jana S Huisman; Jérémie Scire; Sebastian Bonhoeffer; Tanja Stadler; Daniel C Angst; Jinzhou Li; Richard A Neher; Marloes H Maathuis
Journal:  Elife       Date:  2022-08-08       Impact factor: 8.713

8.  Applying infectious disease forecasting to public health: a path forward using influenza forecasting examples.

Authors:  Chelsea S Lutz; Mimi P Huynh; Monica Schroeder; Sophia Anyatonwu; F Scott Dahlgren; Gregory Danyluk; Danielle Fernandez; Sharon K Greene; Nodar Kipshidze; Leann Liu; Osaro Mgbere; Lisa A McHugh; Jennifer F Myers; Alan Siniscalchi; Amy D Sullivan; Nicole West; Michael A Johansson; Matthew Biggerstaff
Journal:  BMC Public Health       Date:  2019-12-10       Impact factor: 3.295

9.  The impact of social distancing on COVID19 spread: State of Georgia case study.

Authors:  Pinar Keskinocak; Buse Eylul Oruc; Arden Baxter; John Asplund; Nicoleta Serban
Journal:  PLoS One       Date:  2020-10-12       Impact factor: 3.240

10.  Modeling COVID-19 scenarios for the United States.

Authors: 
Journal:  Nat Med       Date:  2020-10-23       Impact factor: 53.440

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