Johnathan C Maza1, Derek M García-Almedina1, Lydia E Boike1,2, Noah X Hamlish3, Daniel K Nomura1,2,3,4,5, Matthew B Francis1,6. 1. Department of Chemistry, University of California, Berkeley, California 94720, United States. 2. Novartis-Berkeley Center for Proteomics and Chemistry Technologies, Cambridge, Massachusetts 02139, United States. 3. Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720, United States. 4. Department of Nutritional Sciences and Toxicology, University of California, Berkeley, Berkeley, California 94720, United States. 5. Innovative Genomics Institute, Berkeley, California 94720, United States. 6. Materials Sciences Division, Lawrence Berkeley National Laboratories, Berkeley, California 94720,United States.
Abstract
A convenient enzymatic strategy is reported for the modification of cell surfaces. Using a tyrosinase enzyme isolated from Agaricus bisporus, unique tyrosine residues introduced at the C-termini of nanobodies can be site-selectively oxidized to reactive o-quinones. These reactive intermediates undergo rapid modification with nucleophilic thiol, amine, and imidazole residues present on cell surfaces, producing novel nanobody-cell conjugates that display targeted antigen binding. We extend this approach toward the synthesis of nanobody-NK cell conjugates for targeted immunotherapy applications. The resulting NK cell conjugates exhibit targeted cell binding and elicit targeted cell death.
A convenient enzymatic strategy is reported for the modification of cell surfaces. Using a tyrosinase enzyme isolated from Agaricus bisporus, unique tyrosine residues introduced at the C-termini of nanobodies can be site-selectively oxidized to reactive o-quinones. These reactive intermediates undergo rapid modification with nucleophilic thiol, amine, and imidazole residues present on cell surfaces, producing novel nanobody-cell conjugates that display targeted antigen binding. We extend this approach toward the synthesis of nanobody-NK cell conjugates for targeted immunotherapy applications. The resulting NK cell conjugates exhibit targeted cell binding and elicit targeted cell death.
Cells are the basic
units of life and are capable of dynamically
sensing and responding to their environments through biomolecular
interactions on their surfaces. As such, the ability to manipulate
the cell surface has a broad range of applications in basic and applied
science. For example, the attachment of DNA oligonucleotides to cells
has enabled their controlled adhesion to glass surfaces and gold electrodes,[1−3] and the decoration of different cells with complementary DNA strands
has allowed the formation of controlled cell–cell contacts.[4] Finally, the introduction of cancer-antigen-binding
paratopes to the surfaces of immune cells has led to the development
of cell-based immunotherapies against a variety of cancers.[5] While genetic engineering has been a key technology
in many of these applications, new chemistries are emerging for the
direct attachment of complex molecules to cell surfaces.[6] These methods could help overcome challenges
associated with viral transduction vectors, like batch-to-batch heterogeneity
and long-term safety concerns, while also representing a means for
the scalable preparation of novel cell conjugates.[7−9]Chemistries
that modify cells must perform under a narrow set of
conditions in order to maintain cell viability. They must proceed
in buffered aqueous media at the optimal physiological pH—typically
pH 7.4—and within a temperature range of 4–37 °C.
Furthermore, these reactions must have sufficiently rapid kinetics
to achieve high conversion even when confronted with the limits of
surface diffusion characteristics. Due to these requirements, few
chemistries exist that can attach molecules and proteins to live cells.
A notable example includes metabolic engineering using unnatural oligosaccharides.
This enables the decoration of cell surfaces with biorthogonal azide
handles for subsequent modification with phosphine- or cyclooctyne-containing
cargo.[10−12] This approach has also been used to engineer new
interactions between immune cells and cancer.[13] Installation of DNA molecules onto cell surfaces has enabled the
hybridization-directed installation of full-length IgG onto cell surfaces
with applications in immunotherapy.[14,15] Finally, enzymes
like sortase,[16,17] asparaginyl ligase,[18] and fucosyltransferase[19] have all been used to catalyze the attachment of small molecules
and proteins to cells.Recently, the enzyme tyrosinase has emerged
as a useful tool for
site-selective protein modification.[20−23] Canonically, the enzyme acts
on free tyrosine amino acids to catalyze their oxidation to highly
reactive o-quinone intermediates in the biosynthesis
of melanin. Over the last two decades, our lab has used these o-quinones to modify protein N-termini (especially proline
N-termini) as well as free thiols present on proteins (Figure a).[20,21] Recent advances have shown that the tyrosinase from Agaricus
bisporus (abTYR) is also capable of oxidizing engineered
tyrosine tags, like Ser–Gly4–Tyr tags at
protein C-termini. This produces o-quinones in specific
locations on protein surfaces, which can then be intercepted by a
variety of small-molecule- or protein-based nucleophiles.[21−23] This strategy has been shown previously for the site-specific modification
of both tyrosine-tagged single-chain variable fragments and full-length
IgG.[21−23]
Figure 1
General strategy for modifying cell surfaces with nanobodies.
(a)
Tyrosinase catalyzes the oxidation of small-molecule phenols to highly
reactive o-quinones, which can modify nucleophiles
present on proteins. Engineered tyrosine tags at protein termini can
also be oxidized by tyrosinase, producing a site-specific o-quinone on the protein that reacts with protein-based
nucleophiles. (b) Tyrosine-tagged nanobodies can be site-specifically
oxidized by tyrosinase for attachment of these proteins to cells.
The resulting linkage produces a well-defined point of attachment
for installing nanobodies on cell surfaces while imbuing the target
cell with novel antigen-binding functionality. (c) Nanobodies are
low-molecular-weight (∼10–15 kDa) antigen-binders derived
from the variable region of the camelid antibody (PDB ID 3K1K).
General strategy for modifying cell surfaces with nanobodies.
(a)
Tyrosinase catalyzes the oxidation of small-molecule phenols to highly
reactive o-quinones, which can modify nucleophiles
present on proteins. Engineered tyrosine tags at protein termini can
also be oxidized by tyrosinase, producing a site-specific o-quinone on the protein that reacts with protein-based
nucleophiles. (b) Tyrosine-tagged nanobodies can be site-specifically
oxidized by tyrosinase for attachment of these proteins to cells.
The resulting linkage produces a well-defined point of attachment
for installing nanobodies on cell surfaces while imbuing the target
cell with novel antigen-binding functionality. (c) Nanobodies are
low-molecular-weight (∼10–15 kDa) antigen-binders derived
from the variable region of the camelid antibody (PDB ID 3K1K).Herein, we adapt and expand this bioconjugation chemistry
to achieve
the one-step attachment of tyrosine-tagged proteins to cell surfaces.
In this approach, a protein of interest is expressed with a C-terminal
tyrosine, such as the sequence described above. The protein can be
mixed with cells of interest and abTYR for site-selective activation
of the introduced tyrosine to the corresponding o-quinone intermediate. These C-terminal o-quinones
then react with endogenous nucleophiles present on cell surfaces,
producing well-defined points of attachment (Figure b).To demonstrate the applicability
of this approach, we generated
tyrosine-tagged nanobodies, which are small antigen-binders derived
from the variable regions of camelid immunoglobulins (Figure c).[24] We show that abTYR site-specifically oxidizes introduced tyrosine
tags and mediates the attachment of nanobodies to cell surfaces while
retaining their antigen-binding abilities. We extend this strategy
toward the synthesis of nanobody–natural killer (NK) cell conjugates,
which exhibited targeted cell lysis. This strategy thus provides a
simple, direct synthetic alternative to genetic engineering for cell-based
immunotherapy applications.
Results and Discussion
Tyrosinase-Mediated Synthesis
of Nanobody–Cell Conjugates
To begin, a previously
reported nanobody against GFP was expressed
with a C-terminal Ser–Gly4–Tyr tag (nbGFPTyr).[25] To test the ability of abTYR
to selectively oxidize the introduced tyrosine tag, 10 μM nbGFPTyr was exposed to 400 nM abTYR at 37 °C. A time-course
experiment was performed, and analysis using ESI-TOF mass spectrometry
revealed that the nbGFPTyr was fully converted to a singly
oxidized product after 10 min, as indicated by a mass shift of ∼14
Da (Figure a and Supplementary Figure S1). Importantly, if the
tyrosine residue in the tyrosine tag was swapped for a cysteine (nbGFPCys) no change in molecular weight was observed in the ESI-TOF
MS trace, and no disulfide was formed. Taken together, these results
indicate that it is the single phenol in the C-terminal tyrosine tag
being oxidized by abTYR, providing a uniquely reactive o-quinone on the nanobody for attachment to cell surfaces (Supplementary Figure S1). This is in good agreement
with previous work demonstrating the site-specific oxidation of tyrosine-tagged
proteins.[21−23]
Figure 2
Modification of NK cell surfaces with nanobodies. (a)
Tyrosinase
enzyme produces a site-specific o-quinone at the
C-terminal Ser–Gly4–Tyr tag installed on
nanobodies, as evidenced by a 14 Da mass shift detected via ESI-TOF
MS. (b) To verify that NK cell surfaces can be decorated with nanobodies
using tyorsinase, a Tyr-tagged nanobody against GFP (nbGFPTyr) was designed. Using tyrosinase, nbGFPTyr can be attached
to the cell surface, and 2° labeling with GFP can be used to
analyze the reaction using flow cytometry. (c) Labeling experiments
with nbGFPTyr validated attachment of the nanobody to the
cell surface, as only cells treated with both nbGFPTyr and
tyrosinase showed an increase in GFP fluorescence (red trace) over
controls (blue and orange traces). (d) Using a Cys point mutant, a
single FITC dye can be attached to each nbGFPTyr (nbFITC).
After attachment of 10 μM nbFITC to cell surfaces, comparison
against FITC-calibration beads determined that a median value of ∼120,000
copies of the nanobody were linked to the cells. Data are represented
as box plots, with the top of the box representing the 75th percentile
of the data, the middle line representing the median of the data,
and the bottom of the box representing the 25th percentile of the
data.
Modification of NK cell surfaces with nanobodies. (a)
Tyrosinase
enzyme produces a site-specific o-quinone at the
C-terminal Ser–Gly4–Tyr tag installed on
nanobodies, as evidenced by a 14 Da mass shift detected via ESI-TOF
MS. (b) To verify that NK cell surfaces can be decorated with nanobodies
using tyorsinase, a Tyr-tagged nanobody against GFP (nbGFPTyr) was designed. Using tyrosinase, nbGFPTyr can be attached
to the cell surface, and 2° labeling with GFP can be used to
analyze the reaction using flow cytometry. (c) Labeling experiments
with nbGFPTyr validated attachment of the nanobody to the
cell surface, as only cells treated with both nbGFPTyr and
tyrosinase showed an increase in GFP fluorescence (red trace) over
controls (blue and orange traces). (d) Using a Cys point mutant, a
single FITC dye can be attached to each nbGFPTyr (nbFITC).
After attachment of 10 μM nbFITC to cell surfaces, comparison
against FITC-calibration beads determined that a median value of ∼120,000
copies of the nanobody were linked to the cells. Data are represented
as box plots, with the top of the box representing the 75th percentile
of the data, the middle line representing the median of the data,
and the bottom of the box representing the 25th percentile of the
data.Next we explored the ability of
abTYR to catalyze the attachment
of nbGFPTyr to cell surfaces. As a model cell system, we
used NK cells, which have recently emerged as promising agents for
targeted immunotherapies. Like T-cells, NK cells possess cytotoxic
effector functions, and studies have shown that adoptively transferred
NK cells are less prone to host rejection than their T-cell counterparts.[26,27] Additionally, methods for generating a robust supply of immortalized
NK cells have been developed, enabling the scalable synthesis of engineered
NK variants. NK-92MI is an immortalized NK cell line that constitutively
expresses the gene for hIL-2, a cytokine required for NK cell proliferation
and activation, facilitating cell culture and analysis of downstream
effector functions.[28,29] However, these cells do not express
Fc receptors, limiting their use in antibody-dependent cell cytotoxicity
applications. Thus, the direct modification of this cell type with
novel antigen-binding functionalities would provide exciting avenues
for the synthesis of “off-the-shelf” NK-based immunotherapeutics.As an initial proof of concept, ∼1 × 106 NK-92MI cells were exposed to 10 μM nbGFPTyr with
400 nM abTYR for 10 min at 37 °C in a cell incubator under 5%
CO2. To validate successful attachment of the nbGFPTyr to the cell surfaces, cells were washed and subjected to
a secondary labeling step with 1 μM sfGFP for 30 min (Figure b). After any unbound
sfGFP was washed away, cells were analyzed for GFP fluorescence using
flow cytometry. An increase in GFP fluorescence was only detected
in the cells that had been treated with both nbGFPTyr and
abTYR (Figure c, red
trace). Cells exposed to only nbGFPTyr showed no change
in fluorescence over no treatment controls (Figure c, blue and orange traces). These results
indicate that the oxidation of nbGFPTyr by abTYR facilitates
covalent attachment of the nanobody to the cell surface and that the
attached nanobody retains antigen binding. Importantly, cell viability
was unchanged after modification, as no increase in propidium iodide
signal, a fluorescent indicator of cell death, was detected for those
NK cells modified with nanobodies over controls (Supplementary Figure S2). In addition, half-life studies were
also performed. It was determined that the attached nanobodies were
retained on the cell surfaces with a half-life of ∼7.8 h (Supplementary Figure S3). This is comparable
to other techniques that covalently attach proteins to the cell surface[14,19] and means NK cell surfaces should be returned to their unmodified
state within 48 h.To determine the number of nanobodies that
were attached to the
cell surface, we generated an nbGFPTyr bearing an alanine
to cysteine mutation at position 76. We then site-specifically attached
a maleimide–FITC dye to this cysteine (nbFITC, Supplementary Figure S4). Treatment of cells
with this construct and abTYR resulted in attachment of nbFITC to
the cell surface. Since a single FITC molecule is on every nanobody,
comparison of the nbFITC-labeled cells to FITC calibrant beads, which
contain a known number of FITC molecules, enabled the determination
of the number of nanobodies on each cell surface. Using this approach,
it was determined that a median of ∼120,000 copies of the nanobody
were attached to each NK-92MI cell surface upon exposure to 10 μM
nanobody and 400 nM abTYR for 10 min. The amount of nbFITC deposited
on the cell surface can be tuned, as lower concentrations of the nanobody
resulted in less modification. However, even nanobody concentrations
as low as 1 μM resulted in fluorescence labeling above background
levels (Figure d).As a comparison, we also performed labeling reactions on Jurkat
cells, an immortalized T-cell line. Approximately ∼1 ×
106 Jurkat cells were incubated with varying concentrations
of nbFITC in the presence or absence of 400 nM abTYR. After incubation
for 10 min at 37 °C, cells were washed and analyzed for FITC
fluorescence using flow cytometry. Jurkat cells exposed to both nbFITC
and abTYR showed an increase in FITC signal over nbFITC only and untreated
controls (Supplementary Figure S5). Once
again, cell viability remained unchanged after modification, as no
increase in propidium iodide signal was observed (Supplementary Figure S5). Comparison against FITC-calibration
beads showed that using 10 μM nbFITC and 400 nM abTYR attached
a median of ∼210,000 copies of the nanobodies to the cell surface
(Supplementary Figure S5). Nanobody attachment
could be tuned, with concentrations of nanobody as low as 1 μM
resulting in fluorescence labeling over controls.We also modified
human PBMCs using this same approach. Gratifyingly,
we see similar increases in fluorescence only when PBMCs are exposed
to both 10 μM nbGFPTyr and 400 nM abTYR while retaining
high cell viability (Supplementary Figure S6).To validate that nanobody attachment was occurring at the
cell
surface, Jurkat cells were modified with 10 μM nbFITC in the
presence or absence of 400 nM abTYR. After reaction, the cell membrane
was then labeled with a cell-membrane-specific far-red dye. Imaging
using a confocal microscope revealed distinct halos of FITC signal
only in the cells treated with nbFITC and abTYR, which colocalized
with the cell membrane dye (Supplementary Figure S7). Some nonspecific binding of nbFITC was observed in cells
treated with nbFITC in the absence of abTYR, but no clear halo was
observed.Jurkat cells are a robust cell line and can be easily
cultured
to produce large quantities of cells. As a result, they are a useful
cell line for proteomics experiments, which often require large amounts
of cellular material. To understand the nature of the site of attachment
between the cell surface and tyrosine-tagged nanobodies, we designed
a proteomics experiment using an alkynyl-tyramide handle. This small-molecule
probe has a phenol moiety for abTYR activation and attachment to cellular
proteins as well as a terminal-alkyne moiety for reaction with azide-bearing
molecules in a Cu(II)-mediated azido-alkyne cycloaddition. To ∼100
× 106 Jurkat cells was added 100 μM alkynyl-tyramide
probe and 400 nM abTYR to a final volume of 10 mL. Cells were incubated
at 37 °C for 20 min and then washed. After washing, cells were
lysed, and modified proteins were labeled with an N3-TEV-biotin
peptide tag. Proteins were then bound to a streptavidin–agarose
resin and trypsin digested. Alkynyl-tyramide probe-modified peptides
were released using TEV protease and then analyzed using mass spectrometry
(Supplementary Figure S8).Proteomic
analysis identified 437 unique peptide sequences modified
with the alkynyl-tyramide probe. Analysis of the amino acid residues
modified with the probe identified lysine (50.6% of modified residues),
histidine (30.2% of modified residues), and cysteine (19.2% of modified
residues) as the nucleophilic sites responsible for modification (Supplementary Figure S8). While modification
of thiol groups with abTYR-generated o-quinones has
already been established, to the best of our knowledge, this is one
of the first examples of o-quinones reacting with
the amines and imidazoles of lysine and histidine. In purified protein
labeling reactions, off-target modification with lysine and histidine
residues has not been observed, even when the protein being modified
contains a highly solvent-accessible His6 tag for purification.
However, our previous work screening peptide N-termini for their ability
to be modified by o-quinones found that both primary
and secondary amines can be modified using this approach.[30] It is not unreasonable that reactions involving
these residues are captured in our proteomics experiment. It is also
possible that the modifications observed represent unique reactive
contexts on the cell surface, where the heterogeneity of proteins,
nucleophiles, and solvent-accessible sites combine to afford unanticipated
modifications. While we are further exploring the nature of these
reactions on cell surfaces, we stress that solution-based oxidative
couplings using purified proteins proceed with excellent chemoselectivity.[20−22]We also analyzed the uniquely identified proteins based on
their
annotated subcellular localization. We found that only ∼23%
of the identified proteins represented known cell membrane or secreted
proteins, with the rest of the annotations representing proteins inside
the cell, suggesting that this small-molecule probe is capable of
crossing the cell membrane before it quenches (Supplementary Figure S8). This is not surprising, as a paper
published while this Article was under review also found that tyrosinase-generated
small-molecule o-quinones can be used to label intracellular
proteomes.[31]To explore if our small-molecule
proteomics data were representative
of the modifications using tyrosine-tagged proteins, we performed
a proteomics experiments using a biotinylated nbGFPTyr as
bait (nbBAIT). After labeling the cell surface with this nanobody,
we lysed the cells and captured any protein modified by the biotinylated
nbBAIT protein using a streptavidin–agarose resin. The proteins
were digested using trypsin, and the resulting peptides were submitted
for proteomic analysis. Of the proteins captured in this experiment,
only nine overlapped with the small-molecule proteomics experiment.
Seven of these proteins have a known extracellular annotation and
represent unique peptides in our small-molecule experiment that showed
cysteine, lysine, and histidine modifications (Supplementary Figure S9).
Targeted Cell–Cell
Interactions in abTYR-Synthesized
Nanobody–NK Cell Conjugates
Once conditions for the
attachment of nanobodies to cell surfaces had been established, we
next explored the ability of nanobody–cell conjugates to engage
in targeted cell–cell interactions. For this, we expressed
a previously reported nanobody that binds the human epidermal growth
factor receptor 2 (HER2) with the same C-terminal Ser–Gly4–Tyr tag (nbHER2Tyr).[24,32] The upregulation of HER2 is a hallmark of many breast cancers and
makes targeting this receptor relevant for therapeutic purposes. Many
HER2 targeting drugs are already available in the clinic where they
show great efficacy against HER2+ cancers.[33]To validate that the conjugation of nbHER2Tyr to
proteins on the cell surface would not perturb HER2 binding, we synthesized
a nbHER2Tyr–sfGFP conjugate using a sfGFP Y200C
mutant and abTYR. When exposed to the HER2+ cell line SK-BR-3, this
construct produced a distinct shift in fluorescence indicative of
successful binding. In comparison, the HER2– cell line MDA-MB-468
exhibited no change in fluorescence, indicating that the o-quinoid linkage connecting the two proteins did not lead to off-target
binding (Supplementary Figure S10).Once again, 1 × 106 NK-92MI cells were treated
with 10 μM nbHER2Tyr in the presence or absence of
400 nM abTYR for 10 min at 37 °C and with 5% CO2.
After washing, the cells were assayed for their ability to bind FITC-labeled
HER2 in solution. Only cells treated with the combination of nbHER2Tyr and abTYR were able to bind FITC-labeled HER2, as evidenced
by a shift in the population of cells exhibiting fluorescence over
an untreated control (Figure a, red trace). No shift in fluorescence was observed for cells
treated with nbGFPTyr and abTYR (Figure a, blue trace). This indicates that antigen-binding
of the conjugates is dependent on the target of the nanobody and is
not influenced by the o-quionone-derived linkage
between the nanobody and the cell surface.
Figure 3
Decoration of NK cells
for nanobody-directed cell–cell interactions.
(a) Using tyrosinase, a Tyr-tagged nanobody against HER2 (nbHER2Tyr) was attached to NK cells. Secondary labeling with a soluble
FITC–HER2 showed that only cells exposed to nbHER2Tyr and tyrosinase exhibited a shift in FITC signal detected via flow
cytometry (red trace) over controls. (b) To assess if tyrosinase-synthesized
NK–nbHER2 conjugates can make targeted contacts with HER2+
cells, NK–nbHER2 cells were mixed with a HER2+ cell line (SK-BR-3)
at a ratio of 2:1 (NK:target). Cells were allowed to bind and settle
and then imaged using fluorscence microscopy. A nearest neighbor analysis
was performed (CellProfiler), indicating that a statistically significant
proportion of target cells (green) were bound to two or more NK–nbHER2
cells (red) only when the NK cells were pretreated with nbHER2Tyr and tyrosinase (orange bar). (c) Fluorescence microscopy
images confirm rosette formation is only seen when NK cells are pretreated
with both nbHER2Tyr and tyrosinase.
Decoration of NK cells
for nanobody-directed cell–cell interactions.
(a) Using tyrosinase, a Tyr-tagged nanobody against HER2 (nbHER2Tyr) was attached to NK cells. Secondary labeling with a soluble
FITC–HER2 showed that only cells exposed to nbHER2Tyr and tyrosinase exhibited a shift in FITC signal detected via flow
cytometry (red trace) over controls. (b) To assess if tyrosinase-synthesized
NK–nbHER2 conjugates can make targeted contacts with HER2+
cells, NK–nbHER2 cells were mixed with a HER2+ cell line (SK-BR-3)
at a ratio of 2:1 (NK:target). Cells were allowed to bind and settle
and then imaged using fluorscence microscopy. A nearest neighbor analysis
was performed (CellProfiler), indicating that a statistically significant
proportion of target cells (green) were bound to two or more NK–nbHER2
cells (red) only when the NK cells were pretreated with nbHER2Tyr and tyrosinase (orange bar). (c) Fluorescence microscopy
images confirm rosette formation is only seen when NK cells are pretreated
with both nbHER2Tyr and tyrosinase.An important component of NK engagement is the binding of these
cells to cell targets. To validate that tyrosinase-synthesized NK–nbHER2Tyr could bind HER2+ cells, nanobody–NK conjugates were
synthesized as described above. After synthesis, the conjugated NK
cells were labeled with a MitoTracker Red dye. Simultaneously, the
HER2+ cell line SK-BR-3 was labeled with a green CFSE dye, and the
two cell types were mixed at a ratio of 2:1 (NK-conjugate:SK-BR-3).
Cells were allowed to bind and settle for 2 h at 37 °C and 5%
CO2, after which they were imaged using a high-throughput
fluorescence microscope (ImageXpress Micro, Molecular Devices). A
nearest neighbor analysis was performed using CellProfiler (Broad
Institute) to determine the number of red-labeled NK cells touching
each green-labeled target SK-BR-3 cell. A greater proportion of green
target cells were bound by two or more red NK cells only if they had
been pretreated with 10 μM nbHER2Tyr and 400 nM abTYR
for 10 min (Figure b, orange bar). Absence of abTYR or conjugation with nbGFPTyr resulted in no statistically significant binding of target cells
over untreated controls (Figure b, blue bars). Finally, a rosette pattern of binding
between the green HER2+ cells and the red NK cells, commonly observed
when cells are forming cell:cell contacts, was only observed for NK
cells treated with nbHER2Tyr and abTYR (Figure c). Taken together, these results
indicate that the tyrosinase-synthesized nanobody–NK conjugates
form specific contacts with HER2+ cell types in a manner dependent
on the antigen target of the nanobody.
Targeted Killing of nbHER2Tyr–NK Cell Conjugates
Finally, we explored
the ability of tyrosinase-synthesized nanobody–NK
conjugates to perform their effector functions and elicit targeted
cell death. We used a fluorescence-based assay to measure NK-induced
cell lysis. Briefly, HER2+ SK-BR-3 cells were preloaded with calcein
AM dye, which becomes cell-impermeable after uptake. NK-induced cell
death permeabilizes the cell membrane, and leakage of the dye into
the supernatant allows fluorescent determination of NK cytotoxicity
(Figure a).
Figure 4
Targeted cell
killing elicited by tyrosinase-synthesized nanobody–NK
cell conjugates. (a) Schematic representation of the fluorescence-based
cell assay used to determine NK cytotoxicity. HER2+ cells (SK-BR-3)
were preloaded with calcein AM dye, which is retained by the cell
membrane after uptake. Lysis of the HER2+ cell releases dye into the
supernatant, providing a measurement for cell lysis. Only NK cells
pretreated with both nbHER2Tyr and tyrosinase (orange bar)
show statistically significant specific cell lysis over control treatments.
(b) To assess how the ratio of NK:target cell impacts specific cytotoxicity,
NK–nbHER2 cells were synthesized using 10 μM nbHER2Tyr and 400 nM tyrosinase and mixed with calcein AM loaded
HER2+ cells (SK-BR-3). Statistically significant cell death was observed
at ratios even as low as 2:1 (effector:target). (c) To assess the
required concentration of nbHER2Tyr needed to elict NK-mediated
cell death, a variety of concentrations of nbHER2Tyr were
used to label NK cells with tyrosinase. Increased lysis was observed
when using 5 and 10 μM nbHER2, while a sharp reduction of NK
lytic activity was observed at the higher concentration of 20 μM
nbHER2Tyr.
Targeted cell
killing elicited by tyrosinase-synthesized nanobody–NK
cell conjugates. (a) Schematic representation of the fluorescence-based
cell assay used to determine NK cytotoxicity. HER2+ cells (SK-BR-3)
were preloaded with calcein AM dye, which is retained by the cell
membrane after uptake. Lysis of the HER2+ cell releases dye into the
supernatant, providing a measurement for cell lysis. Only NK cells
pretreated with both nbHER2Tyr and tyrosinase (orange bar)
show statistically significant specific cell lysis over control treatments.
(b) To assess how the ratio of NK:target cell impacts specific cytotoxicity,
NK–nbHER2 cells were synthesized using 10 μM nbHER2Tyr and 400 nM tyrosinase and mixed with calcein AM loaded
HER2+ cells (SK-BR-3). Statistically significant cell death was observed
at ratios even as low as 2:1 (effector:target). (c) To assess the
required concentration of nbHER2Tyr needed to elict NK-mediated
cell death, a variety of concentrations of nbHER2Tyr were
used to label NK cells with tyrosinase. Increased lysis was observed
when using 5 and 10 μM nbHER2, while a sharp reduction of NK
lytic activity was observed at the higher concentration of 20 μM
nbHER2Tyr.NK-92MI cells were treated
with nbHER2Tyr in the presence
or absence of abTYR. As an isotype control, NK cells were also treated
with nbGFPTyr and abTYR. After treatment, cells were mixed
with the calcein AM-labeled SK-BR-3 cells at a ratio of 5:1 (NK:SK-BR-3)
and allowed to interact at 37 °C and 5% CO2. After
4 h, cells were spun down, and the supernatant was harvested for fluorescence
determination. A statistically significant cytotoxic response was
only observed in the NK cells pretreated with both nbHER2Tyr and abTYR (Figure a, orange bar). Exposure of NK cells to nbHER2Tyr alone
did not elicit any significant response over no treatment controls,
indicating that the cytotoxic response requires direct conjugation
between the nanobody and the cell surface (Figure a). In addition, no significant cell death
was observed in NK cells conjugated to nbGFPTyr via abTYR
(Figure a). This indicates
that it is not the o-quinone-derived linkage between
the nanobody and the cell surface nor the exposure of the NK cells
to abTYR itself that results in cell lysis. Upon varying the ratio
of NK–nbHER2Tyr conjugates to SK-BR-3 cells, we
found that the conjugates were capable of eliciting targeted cell
death even at ratios as low as 2:1 (NK-conjugate:SK-BR-3, Figure b).We also
examined how different concentrations of nbHER2Tyr in the
abTYR coupling step affected the lysis ability of the resulting
NK cell conjugates. An increase in the ability of the NK-conjugates
to elicit cell death was observed when they were exposed to nbHER2Tyr concentrations up to 10 μM. At the highest nbHERTyr concentration of 20 μM, however, the sharp decrease
in cell lysis ability suggests that there is an optimal density of
binding proteins on the cell surfaces, beyond which the NK cells lose
their ability to engage their effector functions (Figure c). It is likely that very
high levels of nanobody labeling preclude the binding of NK activating
receptors to their cognate ligands.One mechanism by which NK
cells mediate their cytotoxic functionality
is through NKG2D engagement of MICA/B on target cell surfaces.[34] As such, we explored the role of the NKG2D-MICA/B
axis in the cell death mediated by our synthesized NK–nbHER2Tyr conjugates. We performed the same cell killing assays as
above but blocked either NKG2D on the NK cell or MICA/B on the SK-BR-3
target cell using their respective antibodies. As expected, when MICA/B
was blocked on the target cell, a statistically significant reduction
in cell death was observed when compared to an isotype control (Supplementary Figure S11). Interestingly, blocking
NKG2D had no effect compared to an isotype control (Supplementary Figure S11). Modification of the NKG2D receptor
by our conjugated nanobody may occlude the antibody epitope. However,
the marked decrease in cell killing observed after blocking MICA/B
indicates that the NKG2D receptor–ligand axis can still engage
and plays an important role in mediating the cell killing we have
observed.
Conclusion
Here, we have shown that
the enzyme tyrosinase is capable of mediating
the modification of nonengineered cell surfaces with full-size protein
molecules. Using abTYR, unique tyrosine residues on the C-termini
of nanobodies can be site-selectively oxidized. The resulting o-quinones undergo rapid reactions with amine- and thiol-based
nucleophiles present on cell surfaces, as evidenced by proteomic analysis.
Attachment of tyrosine-tagged proteins to the cell surface reached
completion in ∼10 min and with no observed changes to cell
viability. The resulting nanobody–cell conjugates are imbued
with novel antigen-binding functionality, and we displayed the utility
of this approach by synthesizing nbHER2-NK conjugates capable of eliciting
targeted cell death in HER2+ model cell lines, with optimal cell killing
occurring with the use of 10 μM of nbHER2Tyr. It
is likely that different nanobody modification levels will be optimal
for different types of immune cells and applications. A clear benefit
of this approach is the ability to tune the level of modification
by controlling the amount of protein used in the tyrosinase coupling
reaction. Given the ease with which tyrosine tags can be introduced
at protein C-termini during recombinant expression, we anticipate
this approach will facilitate the attachment of a variety of different
protein substrates to cell surfaces, including other tyrosine-tagged
nanobodies, single-chain variable fragments, and even full-length
IgG. Finally, the reliance of the method on low enzyme concentrations
facilitates subsequent processing steps and offers excellent potential
for the scalable synthesis of protein–cell conjugates in the
future.
Authors: Alan M Marmelstein; Marco J Lobba; Casey S Mogilevsky; Johnathan C Maza; Daniel D Brauer; Matthew B Francis Journal: J Am Chem Soc Date: 2020-03-05 Impact factor: 15.419
Authors: Jeremy M Baskin; Jennifer A Prescher; Scott T Laughlin; Nicholas J Agard; Pamela V Chang; Isaac A Miller; Anderson Lo; Julian A Codelli; Carolyn R Bertozzi Journal: Proc Natl Acad Sci U S A Date: 2007-10-17 Impact factor: 11.205