| Literature DB >> 35912185 |
Yahan Tong1,2,3, Jiaying Li4,5, Jieyu Chen1,2, Can Hu2,3,6, Zhiyuan Xu2,3,6, Shaofeng Duan7, Xiaojie Wang8, Risheng Yu8, Xiangdong Cheng2,3,6.
Abstract
Purpose: To develop and validate a radiomics nomogram integrated with clinic-radiological features for preoperative prediction of DNA mismatch repair deficiency (dMMR) in gastric adenocarcinoma. Materials andEntities:
Keywords: DNA mismatch repair deficiency; X-ray computed; gastric cancer/adenocarcinoma; nomogram; radiomics; tomography
Year: 2022 PMID: 35912185 PMCID: PMC9327646 DOI: 10.3389/fonc.2022.865548
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 5.738
Figure 1Flowchart of the recruiting study population and model construction.
Figure 2An example of manual segmentation in gastric cancer. (A) Localized thick wall of gastric cancer with enhancement is observed on the portal venous phase computed tomography (CT) image. (B) Manual segmentation on the same axial slice is depicted with red label.
Clinic-radiological characteristics of patients in the training and testing sets.
| Characteristic | Training set | Internal testing set | External testing set | |||
|---|---|---|---|---|---|---|
| dMMR | pMMR | dMMR | pMMR | dMMR | pMMR | |
|
| ||||||
| mean (sd) | 72.8 (9.1) | 65.6 (10.4) | 69.3 ( | 68.1 (8.1) | 70.0 (8.5) | 64.8 (9.3) |
|
| ||||||
| Male | 13 (54.2) | 38 (80.9) | 6 (54.5) | 15 (78.9) | 9 (42.9) | 33 (84.6) |
| Female | 11 (45.8) | 9 (19.1) | 5 (45.5) | 4 (21.1) | 12 (57.1) | 6 (15.4) |
|
| ||||||
| Cardia | 1 (4.2) | 14 (29.8) | 1 (9.1) | 7 (36.8) | 17 (81.0) | 12 (30.8) |
| Gastric body | 10 (41.7) | 19 (40.4) | 5 (45.5) | 7 (36.8) | 3 (14.3) | 21 (53.8) |
| Antrum | 13 (54.2) | 14 (29.8) | 5 (45.5) | 5 (26.3) | 1 (4.7) | 6 (15.4) |
|
| ||||||
| Median [iqr] | -0.2 [-0.7, 0.6] | -1.1 [-1.5,-0.8] | -0.6 [-0.8, 0.0] | -1.1 [-1.3,-0.7] | -1.1 [-1.4,-0.8] | -1.5 [-1.9,-1.0] |
Figure 3Feature selection with the least absolute shrinkage and selection operator (LASSO) binary logistic regression model. (A) Tuning parameter (λ) selection of the LASSO model. Binomial deviance was drawn versus log(λ). Vertical dotted lines were plotted at the best value using 10-fold cross-validation to tune parameter (λ) selection in the LASSO model. (B) LASSO coefficient profiles of the features. Each colored line represents the corresponding coefficient of each feature. A vertical dotted line was drawn at the selected λ, where non-zero coefficients were obtained with two features.
Univariate and multivariate logistic regression analysis of the clinic-radiological features.
| Characteristics | Univariate analysis | Multivariate analysis | ||||
|---|---|---|---|---|---|---|
| OR | 95% CI | P value | OR | 95% CI | P value | |
| Age | 1.08 | [1.02;1.14] | <0.01 | 1.14 | [1.03;1.25] | <0.01 |
| Sex | 3.57 | [1.21;10.55] | 0.021 | 5.19 | [0.88;30.54] | 0.068 |
| Location | 0.37 | [0.17;0.79] | 0.012 | 0.23 | [0.07;0.73] | 0.013 |
| Rad score | 5.51 | [2.30;13.18] | <0.01 | 9.23 | [2.95;28.92] | <0.01 |
Figure 4The CT-based radiomics nomogram. The radiomics nomogram was built in the training cohort, with the radiomics signature, sex (0 is male, 1 is female), age, and tumor location (0 is antrum, 1 is gastric body, 2 is cardia).
Predictive performance of the radiomics nomogram.
| Radiomics nomogram | AUC (95%CI) | Accuracy | Sensitivity | Specificity | PPV | NPV |
|---|---|---|---|---|---|---|
|
| 0.93 (0.85–1.00) | 0.873 | 0.917 | 0.851 | 0.759 | 0.952 |
|
| 0.82 (0.66–0.98) | 0.733 | 0.616 | 0.824 | 0.727 | 0.737 |
|
| 0.83 (0.73–0.94) | 0.767 | 0.821 | 0.667 | 0.821 | 0.667 |
Figure 5The ROC curves (AUC) of the three models in the training set (A) and internal testing set (B).
Figure 6The ROC curves (AUC) of the external testing set.
Figure 7Calibration curves of the nomogram in the training set (A), internal testing set (B), and external testing set (C).
Figure 8Decision curve analysis (DCA) for the radiomics nomogram and clinics model. The DCA indicated that more net benefits within the most of thresholds probabilities were achieved using the radiomics nomogram.