| Literature DB >> 35911837 |
Yetti Hernaningsih1, Yuli Syafitri2, Yulia Nadar Indrasari1, Prafa Alif Rahmawan2, Mia Ratwita Andarsini3, Indra Lesmana4, Emmanuel Jairaj Moses5, Nur Arzuar Abdul Rahim5, Narazah Mohd Yusoff1,5.
Abstract
Background: The frequency of the beta-thalassemia (β-thalassemia) gene in Indonesia ranges from 3 to 10%. However, in the East Java province, there is still limited information on the prevalence of β-thalassemia mutations in clinically diagnosed beta-thalassemia patients of East Java. Therefore, this study aimed to characterize β-thalassemia mutations in selected patients in the East Java province of Indonesia.Entities:
Keywords: East Java; Indonesia; anemia; β-thalassemia; β-thalassemia mutations
Year: 2022 PMID: 35911837 PMCID: PMC9335155 DOI: 10.3389/fped.2022.925599
Source DB: PubMed Journal: Front Pediatr ISSN: 2296-2360 Impact factor: 3.569
Sequence and size of the primers used for DNA amplification (17).
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|---|---|---|
| Primer 1 | 5′ CCA AGG ACA GGT ACG GCT GTC ATC 3′ | 704 bp |
| Primer 5 | 5′ CCT TCC TAT GAC ATG AAC TTA ACA TT 3′ | |
| Primer 6 | 5′ CTT TCC CTA ATC TCT TTC TTT CAG G 3′ | 470 bp |
| Primer 9 | 5′ GGA ACA AAG GAA CCT TTA ATA G 3′ |
Results of hematology, liver function test (LFT), ferritin, and renal function test (RFT) of all 33 patients.
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|---|---|
| Hematology laboratory, mean ± SD (min—max) | |
| Hemoglobin (g/L) | 81.2 ± 7.0 (68.0–96.0) |
| RBC (x109/L) | 3.40 ± 0.39 (2.62–4.30) |
| MCV (fL) | 71.05 ± 5.72 (60.00–86.30) |
| MCH (pg) | 24.12 ± 2.45 (19.50–29.00) |
| MCHC (g/dL) | 33.91 ± 1.47 (31.80–37.80) |
| RDW-CV | 24.38 ± 6.02 (14.60–37.60) |
| WBC ( × 103/L) | 7.01 ± 1.98 (4.11–11.97) |
| PLT ( ×103/L) | 294.82 ± 138.65 (84.00–765.00) |
| Ferritin (ng/ml) | 2564.39 ± 1616.40 (218.70–7109.30) |
| Serum glutamic oxaloacetic transaminase (SGOT) (U/L) | 44.61 ± 24.26 (20.00–128.00) |
| Serum glutamic pyruvic transaminase (SGPT) (U/L) | 39.52 ± 33.06 (12.00–149.00) |
| Blood urea nitrogen (BUN) (mmol/L) | 3.26 ± 1.08 (0.71–5.71) |
| Serum creatinine (μmol/L) | 33.59 ± 9.72 (8.84–53.04) |
The frequency of β-thalassemia genotype variations.
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|---|---|---|---|
| 1 |
| 12 | 36.4 |
| 2 |
| 6 | 18.2 |
| 3 |
| 3 | 9.1 |
| 4 |
| 1 | 3 |
| 5 |
| 1 | 3 |
| 6 |
| 1 | 3 |
| 7 |
| 1 | 3 |
| 8 |
| 1 | 3 |
| 9 |
| 2 | 6.1 |
| 10 |
| 1 | 3 |
| 11 |
| 1 | 3 |
| 12 |
| 2 | 6.1 |
Biodata, ethnicity groups, and results of hemoglobin electrophoresis, genotyping of β-thalassemia gene, and GenBank accession number in all 33 patients.
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|---|---|---|---|---|---|---|
| 1 | M | 12 | Javanese | Hb E/Beta Thalassemia |
| ON584430 |
| 2 | F | 7 | Javanese | Beta Thalassemia |
| ON584431 |
| 3 | M | 17 | Javanese | Hb E/Beta Thalassemia |
| ON584432 |
| 4 | M | 15 | Javanese | Hb E/Beta Thalassemia |
| ON584433 |
| 5 | F | 17 | Javanese | Hb E/Beta Thalassemia |
| ON584434 |
| 6 | M | 10 | Javanese | Hb E/Beta Thalassemia |
| ON584435 |
| 7 | F | 11 | Javanese | Hb E/Beta Thalassemia |
| ON584436 |
| 8 | F | 14 | Javanese | Hb E/Beta Thalassemia |
| ON584437 |
| 9 | F | 9 | Javanese | Hb E/Beta Thalassemia |
| ON584438 |
| 10 | F | 14 | Javanese | Hb E/Beta Thalassemia |
| ON584439 |
| 11 | M | 13 | Javanese | Hb E/Beta Thalassemia |
| ON584440 |
| 12 | F | 9 | Javanese | Hb E/Beta Thalassemia |
| ON584441 |
| 13 | F | 15 | Javanese | Hb E/Beta Thalassemia |
| ON584442 |
| 14 | M | 10 | Javanese | Hb E/Beta Thalassemia |
| ON584443 |
| 15 | F | 14 | Javanese | Hb E/Beta Thalassemia |
| ON584444 |
| 16 | M | 12 | Javanese | Hb E/Beta Thalassemia |
| ON584445 |
| 17 | F | 10 | Chinese | Beta Thalassemia |
| ON584446 |
| 18 | M | 12 | Chinese | Hb E/ Beta Thalassemia |
| ON584447 |
| 19 | F | 11 | Javanese | Hb E/Beta Thalassemia |
| ON584448 |
| 20 | F | 5 | Javanese | Beta Thalassemia |
| ON584449 |
| 21 | M | 14 | Javanese | Beta Thalassemia |
| ON584450 |
| 22 | M | 11 | Javanese | Hb E/Beta Thalassemia |
| ON584451 |
| 23 | M | 8 | Javanese | Hb E/Beta Thalassemia |
| ON584452 |
| 24 | F | 11 | Javanese | Hb E/Beta Thalassemia |
| ON584453 |
| 25 | F | 12 | Javanese | Hb E/Beta Thalassemia |
| ON584454 |
| 26 | F | 14 | Javanese | Hb E/Beta Thalassemia |
| ON584455 |
| 27 | M | 9 | Javanese | Beta Thalassemia |
| ON584456 |
| 28 | M | 15 | Chinese | Hb E/Beta Thalassemia |
| ON584457 |
| 29 | F | 8 | Javanese | Hb E/Beta Thalassemia |
| ON584458 |
| 30 | F | 6 | Javanese | Hb E/Beta Thalassemia | Not found mutation | ON584459 |
| 31 | M | 8 | Javanese | Hb E/Beta Thalassemia |
| ON584460 |
| 32 | F | 14 | Javanese | Hb E/Beta Thalassemia |
| ON584461 |
| 33 | F | 7 | Javanese | Hb E/Beta Thalassemia |
| ON584462 |
M, male; F, female. GenBank accession number was obtained after depositing the nucleotide sequences into GenBank. The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession numbers can be found below: .