Literature DB >> 35909647

On-chip selection of adenosine aptamer using graphene oxide-coated magnetic nanoparticles.

Hosub Lim, Junhyuck Chang1, Kyung-Il Kim1, Youngkwang Moon2, Saebom Lee2, Byoungsang Lee1, Jung Heon Lee, Jinkee Lee.   

Abstract

Systematic evolution of ligands by exponential enrichment (SELEX) is a method that is generally used for developing aptamers, which have arisen the promising alternatives for antibodies. However, conventional SELEX methods have limitations, such as a limited selection of target molecules, time-consuming and complex fabrication processes, and labor-intensive processes, which result in low selection yields. Here, we used (i) graphene oxide (GO)-coated magnetic nanoparticles in the selection process for separation and label-free detection and (ii) a multilayered microfluidic device manufactured using a three-dimensionally printed mold that is equipped with automated control valves to achieve precise fluid flows. The developed on-chip aptamer selection device and GO-coated magnetic nanoparticles were used to screen aptamer candidates for adenosine in eight cycles of the selection process within approximately 2 h for each cycle. Based on results from isothermal titration calorimetry, an aptamer with a dissociation constant of 18.6 ± 1.5 μM was selected. Therefore, the on-chip platform based on GO-coated magnetic nanoparticles provides a novel label-free screening technology for biosensors and micro/nanobiotechnology for achieving high-quality aptamers.
© 2022 Author(s).

Entities:  

Year:  2022        PMID: 35909647      PMCID: PMC9337878          DOI: 10.1063/5.0095419

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   3.258


  40 in total

1.  In vitro evolution of functional DNA using capillary electrophoresis.

Authors:  Shaun D Mendonsa; Michael T Bowser
Journal:  J Am Chem Soc       Date:  2004-01-14       Impact factor: 15.419

2.  Sol-gel derived nanoporous compositions for entrapping small molecules and their outlook toward aptamer screening.

Authors:  Ji-Young Ahn; SangWook Lee; Minjoung Jo; Jeehye Kang; Eunkyung Kim; Ok Chan Jeong; Thomas Laurell; Soyoun Kim
Journal:  Anal Chem       Date:  2012-02-27       Impact factor: 6.986

Review 3.  Graphene oxide-DNA based sensors.

Authors:  Li Gao; Chaoqun Lian; Yang Zhou; Lirong Yan; Qin Li; Chunxia Zhang; Liang Chen; Keping Chen
Journal:  Biosens Bioelectron       Date:  2014-04-13       Impact factor: 10.618

4.  Adsorption and desorption of DNA on graphene oxide studied by fluorescently labeled oligonucleotides.

Authors:  Marissa Wu; Ravindra Kempaiah; Po-Jung Jimmy Huang; Vivek Maheshwari; Juewen Liu
Journal:  Langmuir       Date:  2011-02-08       Impact factor: 3.882

5.  Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: analysis of yeast GCN4 protein.

Authors:  A R Oliphant; C J Brandl; K Struhl
Journal:  Mol Cell Biol       Date:  1989-07       Impact factor: 4.272

6.  An Antibacterial Nanorobotic Approach for the Specific Targeting and Removal of Multiple Drug-Resistant Staphylococcus aureus.

Authors:  Nayab Batool; Seokyoung Yoon; Saba Imdad; Minsuk Kong; Hun Kim; Sangryeol Ryu; Jung Heon Lee; Akhilesh Kumar Chaurasia; Kyeong Kyu Kim
Journal:  Small       Date:  2021-04-10       Impact factor: 13.281

7.  Identification of malaria parasite-infected red blood cell surface aptamers by inertial microfluidic SELEX (I-SELEX).

Authors:  Christina M Birch; Han Wei Hou; Jongyoon Han; Jacquin C Niles
Journal:  Sci Rep       Date:  2015-07-01       Impact factor: 4.379

Review 8.  Targeting adenosine for cancer immunotherapy.

Authors:  Robert D Leone; Leisha A Emens
Journal:  J Immunother Cancer       Date:  2018-06-18       Impact factor: 13.751

9.  Multiplexed microcolumn-based process for efficient selection of RNA aptamers.

Authors:  David R Latulippe; Kylan Szeto; Abdullah Ozer; Fabiana M Duarte; Christopher V Kelly; John M Pagano; Brian S White; David Shalloway; John T Lis; Harold G Craighead
Journal:  Anal Chem       Date:  2013-02-27       Impact factor: 6.986

10.  Integrated Microfluidic Isolation of Aptamers Using Electrophoretic Oligonucleotide Manipulation.

Authors:  Jinho Kim; Timothy R Olsen; Jing Zhu; John P Hilton; Kyung-Ae Yang; Renjun Pei; Milan N Stojanovic; Qiao Lin
Journal:  Sci Rep       Date:  2016-05-24       Impact factor: 4.379

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