| Literature DB >> 35906671 |
Gregorio Serra1, Vincenzo Antona2, Chiara Cannata2, Mario Giuffrè2, Ettore Piro2, Ingrid Anne Mandy Schierz2, Giovanni Corsello2.
Abstract
BACKGROUND: Arthrogryposis multiplex congenita (AMC) is a group of clinically and etiologically heterogeneous conditions, characterized by prenatal onset contractures affecting two or more joints. Its incidence is about 1 in 3000 live births. AMC may be distinguished into amyoplasia, distal and syndromic arthrogryposis. Distal arthrogryposis (DA) predominantly affects hands and feet. It is currently divided into more than ten subtypes (DA1, DA2A/B, DA3-10), based on clinical manifestations, gene mutations and inheritance pattern. Among them, only a few patients with DA5 have been reported. It is associated to a gain-of-function pathogenic variant of the PIEZO2 gene, encoding for an ion-channel necessary to convert mechanical stimulus to biological signals and crucial for the development of joints, neuromuscular and respiratory systems. Main clinical features include multiple distal contractures, short stature, ptosis, ophthalmoplegia and, in some cases, restrictive lung disease. CASEEntities:
Keywords: Arthrogryposis multiplex congenita; Case report; DA5; Gain-of-function mutation; NGS; Ophthalmoplegia; PIEZO2 gene
Mesh:
Substances:
Year: 2022 PMID: 35906671 PMCID: PMC9336156 DOI: 10.1186/s13052-022-01329-z
Source DB: PubMed Journal: Ital J Pediatr ISSN: 1720-8424 Impact factor: 3.288
Fig. 1a Patient’s front view. High forehead, low anterior hairline, deep-set eyes, wide and depressed nasal bridge, bulbous nose, anteverted nares, long and thick philtrum, increased nasogenian folds and half-opened mouth with “whistling” appearance. b. Lateral view. Right posteriorly rotated ear with thick helix, and microretrognathia
Fig. 2a Ulnar deviation of the hand, arachnodactyly, proximal set and short first, and fifth finger (showing also clinodactyly). b Talipes equinus-varus-adductus-supinatus, overlapping toes, with short, and proximal set of the first (also straight and broad) and fifth ones
Genes included and quality of target NGS analysis
| Name HGNC | Full name | OMIM | Coding sequence length (bases number) | >5x | Coverage% > 10x | >20x | Depth of medium | coverage (x) |
|---|---|---|---|---|---|---|---|---|
| Adenylate cyclase 6 | 600,294 | 3507 | 100.00 | 100.00 | 100.00 | 380.13 | 832 | |
| Activating signal cointegrator 1 complex subunit 1 | 614,215 | 1203 | 100.00 | 100.00 | 99.17 | 172.73 | 423 | |
| Contactin 1 | 600,016 | 3024 | 100.00 | 100.00 | 100.00 | 196.61 | 458 | |
| Contactin associated protein 1 | 602,346 | 4155 | 100.00 | 100.00 | 100.00 | 358.82 | 923 | |
| Docking protein 7 | 610,285 | 1515 | 100.00 | 99.74 | 97.43 | 331.79 | 736 | |
| Endoplasmic reticulum-golgi intermediate compartment 1 | 617,946 | 873 | 100.00 | 100.00 | 100.00 | 444.82 | 747 | |
| FKBP prolyl isomerase 10 | 607,063 | 1749 | 100.00 | 100.00 | 100.00 | 359.79 | 769 | |
| GLE1 RNA export mediator | 603,371 | 2097 | 100.00 | 100.00 | 100.00 | 194.62 | 387 | |
| Kinesin family member 14 | 611,279 | 4947 | 100.00 | 100.00 | 100.00 | 167.48 | 323 | |
| Leucine rich repeat LGI family member 4 | 608,303 | 1614 | 100.00 | 100.00 | 100.00 | 222.95 | 429 | |
| Muscle associated receptor tyrosine kinase | 601,296 | 2610 | 100.00 | 100.00 | 100.00 | 222.38 | 508 | |
| Myosin binding protein C, slow type | 160,794 | 3522 | 100.00 | 100.00 | 100.00 | 183.71 | 581 | |
| Myogenic differentiation 1 | 159,970 | 963 | 100.00 | 100.00 | 100.00 | 623.24 | 1438 | |
| Nucleoporin 88 | 602,552 | 2226 | 100.00 | 100.00 | 100.00 | 206.06 | 482 | |
| Piezo type mechanosensitive ion channel component 2 | 613,629 | 8259 | 100.00 | 100.00 | 99.94 | 191.65 | 677 | |
| Receptor associated protein of the synapse | 601,592 | 1239 | 100.00 | 100.00 | 100.00 | 419.22 | 935 | |
| Scavenger receptor class F member 2 | 613,619 | 2598 | 100.00 | 100.00 | 100.00 | 209.97 | 618 | |
| Spectrin repeat containing nuclear envelope protein 1 | 608,441 | 26,394 | 100.00 | 100.00 | 100.00 | 193.42 | 680 | |
| Thyroid hormone receptor interactor 4 | 604,501 | 1746 | 100.00 | 100.00 | 100.00 | 140.63 | 238 | |
| Ubiquitin like modifier activating enzyme 1 | 314,370 | 3177 | 100.00 | 100.00 | 100.00 | 215.59 | 532 | |
| VPS33B late endosome and lysosome associated | 608,552 | 1854 | 100.00 | 100.00 | 100.00 | 218.34 | 597 | |
| Zinc finger C4H2-type containing | 300,897 | 675 | 100.00 | 100.00 | 100.00 | 103.71 | 158 | |
| Carbohydrate sulfotransferase 14 | 608,429 | 1131 | 100.00 | 100.00 | 100.00 | 260.38 | 467 | |
| Dermatan sulfate epimerase | 605,942 | 2877 | 100.00 | 100.00 | 100.00 | 206.13 | 547 | |
| Endothelin converting enzyme like 1 | 605,896 | 2328 | 100.00 | 100.00 | 98.80 | 248.47 | 929 | |
| Fibrillin 2 | 612,570 | 8739 | 100.00 | 100.00 | 100.00 | 225.84 | 600 | |
| Myosin binding protein C, slow type | 160,794 | 3522 | 100.00 | 100.00 | 100.00 | 183.71 | 581 | |
| Myosin heavy chain 3 | 160,720 | 5823 | 100.00 | 100.00 | 100.00 | 211.55 | 551 | |
| Myosin heavy chain 8 | 160,741 | 5814 | 100.00 | 100.00 | 99.47 | 191.77 | 746 | |
| Sodium leak channel, non-selective | 611,549 | 5217 | 100.00 | 100.00 | 100.00 | 177.57 | 395 | |
| Piezo type mechanosensitive ion channel component 2 | 613,629 | 8259 | 100.00 | 100.00 | 99.94 | 191.65 | 677 | |
| Solute carrier family 35 member A3 | 605,632 | 1104 | 100.00 | 100.00 | 100.00 | 156.35 | 264 | |
| Troponin I2, fast skeletal type | 191,043 | 549 | 100.00 | 100.00 | 100.00 | 355.52 | 890 | |
| Troponin T1, slow skeletal type | 191,041 | 837 | 100.00 | 100.00 | 100.00 | 196.36 | 370 | |
| Actin alpha 1, skeletal muscle | 102,610 | 1134 | 100.00 | 100.00 | 100.00 | 250.29 | 714 | |
| Agrin | 103,320 | 6138 | 100.00 | 100.00 | 99.54 | 351.00 | 897 | |
| Bridging integrator 1 | 601,248 | 1782 | 100.00 | 100.00 | 100.00 | 283.67 | 580 | |
| Calcium/calmodulin dependent serine protein kinase | 300,172 | 2766 | 100.00 | 100.00 | 100.00 | 110.05 | 307 | |
| Cofilin 2 | 601,443 | 501 | 100.00 | 100.00 | 100.00 | 142.68 | 262 | |
| Choline O-acetyltransferase | 118,490 | 2247 | 100.00 | 100.00 | 98.00 | 234.82 | 481 | |
| Cholinergic receptor nicotinic alpha 1 subunit | 100,690 | 1374 | 100.00 | 100.00 | 100.00 | 219.81 | 422 | |
| Cholinergic receptor nicotinic beta 1 subunit | 100,710 | 1506 | 100.00 | 100.00 | 100.00 | 257.88 | 591 | |
| Cholinergic receptor nicotinic delta subunit | 100,720 | 1554 | 100.00 | 100.00 | 100.00 | 326.22 | 666 | |
| Cholinergic receptor nicotinic epsilon subunit | 100,725 | 1482 | 100.00 | 100.00 | 100.00 | 311.97 | 705 | |
| Cholinergic receptor nicotinic gamma subunit | 100,730 | 1554 | 100.00 | 100.00 | 100.00 | 309.39 | 644 | |
| Collagen type VI alpha 2 chain | 120,240 | 3060 | 100.00 | 100.00 | 100.00 | 380.62 | 701 | |
| Collagen like tail subunit of asymmetric acetylcholinesterase | 603,033 | 1368 | 100.00 | 100.00 | 100.00 | 193.63 | 454 | |
| 24-dehydrocholesterol reductase | 606,418 | 1551 | 100.00 | 100.00 | 100.00 | 305.51 | 710 | |
| Dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 | 191,350 | 1227 | 100.00 | 100.00 | 100.00 | 209.58 | 349 | |
| Early growth response 2 | 129,010 | 1431 | 100.00 | 100.00 | 100.00 | 313.71 | 523 | |
| ERCC excision repair 5, endonuclease | 133,530 | 3561 | 100.00 | 100.00 | 100.00 | 171.74 | 386 | |
| ERCC excision repair 6, chromatin remodeling factor | 609,413 | 4482 | 100.00 | 100.00 | 100.00 | 229.78 | 501 | |
| Exosome component 3 | 606,489 | 828 | 100.00 | 100.00 | 99.88 | 292.51 | 690 | |
| Four and a half LIM domains 1 | 300,163 | 972 | 100.00 | 100.00 | 98.66 | 96.30 | 207 | |
| Fukutin | 607,440 | 1386 | 100.00 | 100.00 | 100.00 | 198.58 | 376 | |
| Glucosylceramidase beta | 606,463 | 1611 | 100.00 | 100.00 | 100.00 | 602.97 | 1174 | |
| 1,4-alpha-glucan branching enzyme 1 | 607,839 | 2109 | 100.00 | 100.00 | 100.00 | 204.50 | 501 | |
| Glutamine-fructose-6-phosphate transaminase 1 | 138,292 | 2100 | 100.00 | 100.00 | 100.00 | 162.87 | 429 | |
| Gliomedin | 608,603 | 1656 | 100.00 | 100.00 | 100.00 | 157.95 | 407 | |
| Lysine acetyltransferase 6B | 605,880 | 6222 | 100.00 | 100.00 | 100.00 | 276.88 | 1144 | |
| Kelch like family member 40 | 615,340 | 1866 | 100.00 | 100.00 | 100.00 | 307.58 | 611 | |
| Myelin protein zero | 159,440 | 747 | 100.00 | 100.00 | 100.00 | 293.78 | 823 | |
| Myotubularin 1 | 300,415 | 1812 | 100.00 | 100.00 | 100.00 | 111.02 | 238 | |
| Myosin heavy chain 2 | 160,740 | 5826 | 100.00 | 100.00 | 100.00 | 200.07 | 480 | |
| Nebulin | 161,650 | 19,974 | 100.00 | 100.00 | 100.00 | 193.18 | 564 | |
| Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 | 601,865 | 2277 | 100.00 | 100.00 | 100.00 | 166.51 | 435 | |
| Phosphomannomutase 2 | 601,785 | 741 | 100.00 | 100.00 | 100.00 | 202.86 | 369 | |
| Arginyl-tRNA synthetase 2, mitochondrial | 611,524 | 1737 | 100.00 | 100.00 | 100.00 | 164.02 | 377 | |
| SCO cytochrome c oxidase assembly protein 2 | 604,272 | 801 | 100.00 | 100.00 | 100.00 | 325.72 | 627 | |
| Transforming growth factor beta 3 | 190,230 | 1239 | 100.00 | 100.00 | 100.00 | 280.94 | 449 | |
| Thymidine kinase 2 | 188,250 | 798 | 100.00 | 100.00 | 99.25 | 212.26 | 474 | |
| Troponin T3, fast skeletal type | 600,692 | 771 | 100.00 | 100.00 | 100.00 | 286.03 | 564 | |
| Tropomyosin 3 | 191,030 | 858 | 100.00 | 100.00 | 100.00 | 181.98 | 368 | |
| Transient receptor potential cation channel subfamily V member 4 | 605,427 | 2616 | 100.00 | 100.00 | 100.00 | 308.90 | 554 | |
| tRNA splicing endonuclease subunit 2 | 608,753 | 1398 | 100.00 | 100.00 | 100.00 | 223.97 | 579 | |
| tRNA splicing endonuclease subunit 54 | 608,755 | 1581 | 100.00 | 99.11 | 97.28 | 273.41 | 462 | |
| VRK serine/threonine kinase 1 | 602,168 | 1191 | 100.00 | 100.00 | 100.00 | 177.52 | 298 | |
| Zinc finger and BTB domain containing 42 | 613,915 | 1269 | 100.00 | 100.00 | 100.00 | 372.32 | 655 | |
| Basic helix-loop-helix family member a9 | 615,416 | 708 | 100.00 | 89.27 | 81.50 | 135.39 | 384 | |
| Bone morphogenetic protein receptor type 1B | 603,248 | 1599 | 100.00 | 100.00 | 100.00 | 210.72 | 332 | |
| Chondroitin sulfate synthase 1 | 608,183 | 2409 | 100.00 | 99.63 | 98.13 | 215.28 | 398 | |
| Fibroblast growth factor 9 | 600,921 | 627 | 100.00 | 100.00 | 100.00 | 187.26 | 287 | |
| Growth differentiation factor 5 | 601,146 | 1506 | 100.00 | 100.00 | 100.00 | 364.68 | 699 | |
| Growth differentiation factor 6 | 601,147 | 1368 | 100.00 | 100.00 | 100.00 | 262.93 | 704 | |
| Indian hedgehog signaling molecule | 600,726 | 1236 | 100.00 | 100.00 | 100.00 | 303.92 | 420 | |
| Noggin | 602,991 | 699 | 100.00 | 100.00 | 100.00 | 416.59 | 809 | |
| Pericentrin | 605,925 | 10,011 | 100.00 | 100.00 | 99.91 | 207.88 | 569 | |
| Phosphatidylserine synthase 1 | 612,792 | 1422 | 100.00 | 100.00 | 100.00 | 197.51 | 399vements restriction | |