| Literature DB >> 35905284 |
Xiaoyu Zhu1,2,3, Bowei Xu1,2,3, Lingxue Dai1,2,3, Zuoyuan Wang4, Li Feng1,2,3, Jiangyue Zhao1,2,3.
Abstract
INTRODUCTION: The present study was conducted to determine the association of transforming growth factor-beta (TGF-β) gene polymorphism and myopia.Entities:
Mesh:
Substances:
Year: 2022 PMID: 35905284 PMCID: PMC9333477 DOI: 10.1097/MD.0000000000029961
Source DB: PubMed Journal: Medicine (Baltimore) ISSN: 0025-7974 Impact factor: 1.817
Figure 1.PRISMA Flow Diagram of English article screening process.
Figure 2.PRISMA Flow Diagram of Chinese article screening process.
Basic characteristics of included studies on SNP of TGFbeta1.
| First author | Year | Race | SNP ID | Sample size | Age(year) | Definition of cases (SRE) (D) | Definition of controls (SRE) (D) | HWE | Whether associated to myopia | Quality score | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cases | Controls | Cases | Controls | |||||||||
| Rasool | 2013 | Kashmiri | Rs1982073 | 247 | 176 | Cannot tell | ≤−6.00 | Cannot tell | Yes | Yes | 8 | |
| Rs1800471 | Yes | No | ||||||||||
| Novel variant | Yes | No | ||||||||||
| Lin | 2006 | Chinese | Rs1982073 | 201 | 86 | 16–25 | ≤−6.00 | ≥−0.50 | Yes | Yes | 8 | |
| Hayashi | 2007 | Japanese | Rs1800820 | 330 | 330 | 37.82 ± 11.97 | Cannot tell | ≤−9.25 | ≥−2.00 | Cannot tell | No | 8 |
| Rs1054797 | No | |||||||||||
| Rs1800468 | No | |||||||||||
| Rs1800469 | No | |||||||||||
| Rs2241715 | No | |||||||||||
| Rs11466324 | No | |||||||||||
| Rs2241717 | No | |||||||||||
| Rs11672143 | No | |||||||||||
| Rs11466334 | No | |||||||||||
| Rs2278422 | No | |||||||||||
| Wang | 2009 | Chinese | Rs1982073 | 288 | 208 | 21.76 ± 16.24 | 27.32 ± 7.32 | ≤−6.00 | −0.50 to +1.00 | Yes | No | 9 |
| Rs2229336 | Yes | No | ||||||||||
| Zha | 2009 | Chinese | Rs1800469 | 300 | 300 | 15–48 | 17–46 | −24.00 to −8.00 | −1.00 to +0.88 | Yes | Yes | 9 |
| Rs1800470 | Yes | Yes | ||||||||||
| Rs2241716 | Yes | Yes | ||||||||||
| Rs4803455 | No | Yes | ||||||||||
| Rs11466345 | Yes | No | ||||||||||
| Rs12983047 | Yes | No | ||||||||||
| Rs10417924 | Yes | No | ||||||||||
| Rs12981053 | Yes | No | ||||||||||
| Khor | 2010 | Chinese | Rs4803455 | 630 | 348 | 10–12 | ≤−0.50 | ≥−0.50 | Yes | No | 8 | |
| Zha | 2008 | Chinese | Rs1982073 | 300 | 300 | Cannot tell | ≤−8.00 | ±0.75 | Yes | Yes | 8 | |
| Shi | 2017 | Chinese | Rs1800469 | 73 | 103 | 12–18 (14 ± 1.58) | ≤−0.50 | >−0.50 | Yes | No | 8 | |
| Rs2241716 | 67 | 103 | Yes | Yes | ||||||||
| Rs4803455 | 66 | 103 | Yes | No | ||||||||
| Liu | 2019 | Chinese | Rs4803455 | 343 | 210 | 10.58 ± 2.42 | 8.62 ± 2.12 | ≤−0.50 | >−0.50 | No | Cannot tell | 7 |
| Rs2241716 | Yes | |||||||||||
| Rs1800469 | No | |||||||||||
| Biler | 2018 | Turkish | Rs4803455 | 74 | 77 | 7.1 ± 3 | 9.6 ± 1.8 | ≤−6.00D | ≥−0.50D | Yes | No | 7 |
Basic characteristics of included studies on SNP of TGFbeta3.
| First author | Year | Race | SNP ID | Sample size | Age (year) | Definition of cases (SRE)(D) | Definition of controls (SRE)(D) | HWE | Whether associated to myopia | Quality score | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cases | Controls | Cases | Controls | |||||||||
| Zha | 2008 | Chinese | Rs2268626 | 300 | 300 | Cannot tell | ≤−8.00 | ±0.75 | Yes | No | 8 | |
| Rs3917158 | Yes | No | ||||||||||
| Rs4252328 | Yes | No | ||||||||||
| Rs3917192 | Yes | No | ||||||||||
| Rs3917201 | Yes | No | ||||||||||
| Rs3917205 | Yes | No | ||||||||||
| Rs2284791 | Yes | No | ||||||||||
Results of TGFβ1 SNP meta-analysis.
| SNPs | Genetic models | Number of studies | Events | Pooled OR (95% CI) |
| Heterogeneity | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cases | Controls | FEM | REM | FEM | REM | Q | PQ | I2 (%) | |||
| rs1982073 | C vs T | 4 | 1118/2070 | 736/1540 | 1.31 [1.15, 1.50] | 1.36 [1.01, 1.84] | <.0001 | .05 | 14.21 | 0.003 | 79 |
| CC+CT vs TT | 4 | 819/1035 | 546/770 | 1.56 [1.26, 1.95] | 1.64 [1.04, 2.58] | <.0001 | .03 | 12.07 | 0.007 | 75 | |
| CT vs TT | 4 | 520/736 | 356/580 | 1.54 [1.02, 2.33] | 1.48 [1.17, 1.86] | .001 | .03 | 8.90 | 0.03 | 66 | |
| CC vs TT | 4 | 299/515 | 190/414 | 1.71 [1.30, 2.24] | 1.90 [1.01, 3.55] | .0001 | .05 | 14.11 | 0.003 | 79 | |
| CC vs CT+TT | 4 | 299/1035 | 190/770 | 1.31 [1.05, 1.63] | 1.39 [0.92, 2.09] | .01 | .12 | 9.15 | 0.03 | 67 | |
| rs1800469 | A vs G | 4 | 974/1602 | 750/1414 | 1.33 [1.15, 1.54] | 1.33 [1.15, 1.54] | .0001 | .0001 | 0.94 | 0.82 | 0 |
| AA+AG vs GG | 3 | 621/706 | 493/613 | 1.70 [1.25, 2.32] | 1.76 [1.16, 2.67] | .007 | .008 | 3.21 | 0.20 | 38 | |
| AG vs GG | 3 | 361/446 | 323/443 | 1.67 [0.97, 2.89] | 1.67 [0.97, 2.89] | .009 | .07 | 4.90 | 0.09 | 59 | |
| AA vs GG | 3 | 260/342 | 170/493 | 5.89 [4.31, 8.06] | 5.89 [4.31, 8.06] | <.00001 | <.00001 | 0.42 | 0.81 | 0 | |
| AA vs AG+GG | 3 | 260/706 | 170/613 | 1.46 [1.15, 1.85] | 1.46 [1.15, 1.85] | .002 | .002 | 1.50 | 0.47 | 0 | |
| rs4803455 | A vs C | 5 | 955/2826 | 780/2076 | 0.85 [0.76, 0.96] | 0.85 [0.69, 1.03] | .01 | .10 | 9.36 | 0.05 | 57 |
| AA+AC vs CC | 5 | 818/1413 | 623/1038 | 0.93 [0.79, 1.09] | 0.89 [0.67, 1.18] | .37 | .41 | 9.54 | 0.05 | 58 | |
| AC vs CC | 5 | 681/1276 | 466/881 | 1.03 [0.87, 1.23] | 0.98 [0.75, 1.29] | .72 | .90 | 8.28 | 0.08 | 52 | |
| AA vs CC | 5 | 137/732 | 157/572 | 0.61 [0.47, 0.80] | 0.61 [0.39, 0.95] | .0003 | .03 | 9.07 | 0.06 | 56 | |
| AA vs AC+CC | 5 | 137/1413 | 157/1038 | 0.60 [0.47, 0.77] | 0.62 [0.43, 0.88] | <.0001 | .008 | 6.97 | 0.14 | 43 | |
| rs2241716 | T vs C | 3 | 374/1420 | 387/1226 | 0.74 [0.63, 0.88] | 0.53 [0.24, 1.15] | .0008 | .11 | 31.13 | <0.00001 | 94 |
| TT+TC vs CC | 3 | 326/710 | 329/613 | 0.69 [0.55, 0.86] | 0.45 [0.17, 1.19] | .0008 | .11 | 30.08 | <0.00001 | 93 | |
| TC vs CC | 3 | 278/662 | 271/455 | 0.45 [0.35, 0.57] | 0.26 [0.06, 1.12] | <.00001 | .07 | 47.23 | <0.00001 | 96 | |
| TT vs CC | 3 | 48/432 | 58/342 | 0.60 [0.40, 0.91] | 0.50 [0.15, 1.64] | .02 | .25 | 12.29 | 0.0002 | 84 | |
| TT vs TC+CC | 3 | 48/710 | 58/613 | 0.69 [0.46, 1.05] | 0.63 [0.25, 1.61] | .08 | .34 | 7.91 | 0.02 | 75 | |
Results of TGFβ2 SNP meta-analysis.
| SNPs | Genetic models | Number of studies | Events | Pooled OR (95% CI) |
| Heterogeneity | FEM | REM | Q | PQ | I2 (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cases | Controls | FEM | REM | ||||||||
| rs7550232 | T vs C | 2 | 282/322 | 537/596 | 0.76 [0.50, 1.16] | 0.94 [0.26, 3.37] | 0.20 | 0.92 | 6.81 | 0.009 | 85 |
| TT+TC vs CC | 2 | 160/161 | 294/298 | 1.69 [0.27, 10.66] | 1.55 [0.23, 10.30] | 0.58 | 0.65 | 0.40 | 0.53 | 0 | |
| TC vs CC | 2 | 38/39 | 51/55 | 2.00 [0.29, 13.75] | 1.99 [0.29, 13.72] | 0.48 | 0.49 | 0.01 | 0.91 | 0 | |
| TT vs CC | 2 | 122/123 | 243/247 | 1.59 [0.25, 9.92] | 1.41 [0.21, 9.38] | 0.82 | 0.72 | 0.59 | 0.44 | 0 | |
| TT vs TC+CC | 2 | 122/161 | 243/298 | 0.69 [0.44, 1.10] | 0.85 [0.22, 3.31] | 0.12 | 0.82 | 6.72 | 0.01 | 85 |
Figure 3.Forest plots of the pooled ORs with 95% CIs for associations between TGFbeta1 rs1982073 and myopia. The bars with squares in the middle represent 95% CIs and ORs. The central vertical solid line indicates the ORs for the null hypothesis. Diamond indicates summary OR with its corresponding 95% CI. (A) Allelic model (C vs T); (B) Dominant model (CC+CT vs TT); (C) Heterozygous model (CT vs TT); (D) Homozygous model (CC vs TT); (E) Recessive model (CC vs CT+TT). CIs = confidence intervals, ORs = odds ratios.
Figure 4.Forest plots of the pooled ORs with 95% CIs for associations between TGFbeta1 rs1800469 and myopia. The bars with squares in the middle represent 95% CIs and ORs. The central vertical solid line indicates the ORs for the null hypothesis. Diamond indicates summary OR with its corresponding 95% CI. (A) Allelic model (A vs G); (B) Dominant model (AA+AG vs GG); (C) Heterozygous model (AG vs GG); (D) Homozygous model (AA vs GG); (E) Recessive model (AA vs AG+GG). CIs = confidence intervals, ORs = odds ratios.
Figure 5.Forest plots of the pooled ORs with 95% CIs for associations between TGFbeta1 rs4803455 and myopia. The bars with squares in the middle represent 95% CIs and ORs. The central vertical solid line indicates the ORs for the null hypothesis. Diamond indicates summary OR with its corresponding 95% CI. (A) Allelic model (A vs C); (B) Dominant model (AA+AC vs CC); (C) Heterozygous model (AC vs CC); (D) Homozygous model (AA vs CC); (E) Recessive model (AA vs AC+CC). CIs = confidence intervals, ORs = odds ratios.
Figure 6.Forest plots of the pooled ORs with 95% CIs for associations between TGFbeta1 rs2241716 and myopia. The bars with squares in the middle represent 95% CIs and ORs. The central vertical solid line indicates the ORs for the null hypothesis. Diamond indicates summary OR with its corresponding 95% CI. (A) Allelic model (T vs C); (B) Dominant model (TT+TC vs CC); (C) Heterozygous model (TC vs CC); (D) Homozygous model (TT vs CC); (E) Recessive model (TT vs TC+CC). CIs = confidence intervals, ORs = odds ratios.
Figure 7.Forest plots of the pooled ORs with 95% CIs for associations between TGFbeta2 rs7550232 and myopia. The bars with squares in the middle represent 95% CIs and ORs. The central vertical solid line indicates the ORs for the null hypothesis. Diamond indicates summary OR with its corresponding 95% CI. (A) Allelic model (T vs C); (B) Dominant model (TT+TC vs CC); (C) Heterozygous model (TC vs CC); (D) Homozygous model (TT vs CC); (E) Recessive model (TT vs TC+CC). CIs = confidence intervals, ORs = odds ratios.
Figure 8.Forest plots of the pooled ORs with 95% CIs for associations between TGFbeta1 rs1982073 (A) Allelic model (C vs T); (B) Homozygous model (CC vs TT); (C) Recessive model (CC vs CT+TT) and rs4803455 (D) Allelic model (A vs C); (E) Dominant model (AA+AC vs CC)with myopia after sensitivity analysis. The bars with squares in the middle represent 95% CIs and ORs. The central vertical solid line indicates the ORs for the null hypothesis. Diamond indicates summary OR with its corresponding 95% CI. CIs = confidence intervals, ORs = odds ratios.
Basic characteristics of included studies on SNP of TGFbeta2.
| First author | Year | Race | SNP ID | Sample size | Age (year) | Definition of cases (SRE) (D) | Definition of controls (SRE) (D) | HWE | Whether associated to myopia | Quality score | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cases | Controls | Cases | Controls | |||||||||
| Lin | 2009 | Chinese | Rs7550232 | 195 | 94 | 17–24 | 17–25 | ≤−6.50 | −0.50 to +1.00 | Yes | Yes | 9 |
| Rs991967 | Yes | No | ||||||||||
| Shi | 2017 | Chinese | Rs1473527 | 67 | 103 | 12–18 (14 ± 1.58) | ≤−0.50 | >−0.50 | Yes | No | 8 | |
| Rs6604604 | Yes | No | ||||||||||
| Rs6691070 | Yes | No | ||||||||||
| Rs7750232 | Yes | No | ||||||||||
| Rs900 | Yes | No | ||||||||||