Literature DB >> 35904674

Construction of a Prognostic Evaluation Model for Stomach Adenocarcinoma on the Basis of Immune-Related lncRNAs.

Chaobo Xu1, Zhengwei Chen1, Xiaoming Pan1, Ming Liu1, Guoxiong Cheng1, Jiaxin Li1, Yijun Mei2.   

Abstract

Progression, prognosis, and therapeutic strategy of stomach adenocarcinoma (STAD) have a close connection with tumor microenvironment (TME). Thus, it is pivotal to delve into the TME and immune-related genes, which may bring possibilities for improving patient's prognosis. TCGA-STAD dataset was analyzed to acquire differentially expressed lncRNAs in tumor samples, which were overlapped with the immune-related lncRNA datasets in the ImmLnc database. Twenty-six lncRNAs related to STAD immunity and patient's prognosis were acquired by univariate Cox analysis. Following lncRNA expression patterns, STAD samples could be classified into two clusters with completely different immune patterns. We performed multivariate Cox regression analysis on lncRNAs to identify 7-feature lncRNAs and constructed a corresponding prognostic model. The model validity was verified by survival analysis and ROC curve in validation and training sets. To explore connection between model and TME and tumor drug resistance, this study analyzed differences in immune cell infiltration between samples from high- and low-risk groups and then revealed immune cells follicular helper with significant differences in tumor tissue infiltration. Analysis of resistance to chemotherapeutic drugs revealed that samples in the high-risk group had resistance to cisplatin, doxorubicin, bleomycin, and gemcitabine. Through univariate and multivariate Cox analyses, we manifested that risk score could be an independent prognostic factor. Combining risk score and clinical factors, a nomogram was constructed to accurately predict patient's prognosis. This model can effectively predict prognosis, TME, and drug resistance of STAD patients, which may provide a reference for tumor development evaluation and precise treatment for clinical STAD.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Drug resistance; Immune microenvironment; Prognostic model; Stomach adenocarcinoma; lncRNA

Year:  2022        PMID: 35904674     DOI: 10.1007/s12010-022-04098-x

Source DB:  PubMed          Journal:  Appl Biochem Biotechnol        ISSN: 0273-2289            Impact factor:   3.094


  28 in total

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Authors:  Maya Balakrishnan; Rollin George; Ashish Sharma; David Y Graham
Journal:  Curr Gastroenterol Rep       Date:  2017-08

Review 2.  Immunotherapy for lung cancer.

Authors:  Antonius Steven; Scott A Fisher; Bruce W Robinson
Journal:  Respirology       Date:  2016-04-21       Impact factor: 6.424

Review 3.  Management of Gastric Adenocarcinoma for General Surgeons.

Authors:  Hisakazu Hoshi
Journal:  Surg Clin North Am       Date:  2020-03-18       Impact factor: 2.741

Review 4.  The Tumor Microenvironment Innately Modulates Cancer Progression.

Authors:  Dominique C Hinshaw; Lalita A Shevde
Journal:  Cancer Res       Date:  2019-07-26       Impact factor: 12.701

5.  Infiltration of diametrically polarized macrophages predicts overall survival of patients with gastric cancer after surgical resection.

Authors:  Heng Zhang; Xuefei Wang; Zhenbin Shen; Jiejie Xu; Jing Qin; Yihong Sun
Journal:  Gastric Cancer       Date:  2014-09-18       Impact factor: 7.370

Review 6.  Immunotherapy for metastatic breast cancer.

Authors:  Tomoharu Sugie
Journal:  Chin Clin Oncol       Date:  2018-06

7.  Immune cells within the tumor microenvironment: Biological functions and roles in cancer immunotherapy.

Authors:  Xu Lei; Yu Lei; Jin-Ke Li; Wei-Xing Du; Ru-Gui Li; Jing Yang; Jian Li; Fang Li; Hua-Bing Tan
Journal:  Cancer Lett       Date:  2019-11-12       Impact factor: 8.679

Review 8.  Immunotherapy and Prevention of Pancreatic Cancer.

Authors:  Alexander H Morrison; Katelyn T Byrne; Robert H Vonderheide
Journal:  Trends Cancer       Date:  2018-04-30

9.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

10.  Dissecting transcriptional heterogeneity in primary gastric adenocarcinoma by single cell RNA sequencing.

Authors:  Min Zhang; Shuofeng Hu; Min Min; Bing Liu; Xiaomin Ying; Yan Liu; Yanli Ni; Zheng Lu; Xiaotian Sun; Jiaqi Wu
Journal:  Gut       Date:  2020-06-12       Impact factor: 23.059

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