| Literature DB >> 35902616 |
Eyerusalem Fetene1, Getachew Teka1, Hana Dejene1,2, Deresegn Mandefro1, Tsedale Teshome1, Dawit Temesgen1, Haileleul Negussie1, Tesfaye Mulatu3, Megarsa Bedasa Jaleta1, Samson Leta4.
Abstract
Culicoides biting midges (Diptera: Ceratopogonidae) are the major vectors of bluetongue, Schmallenberg, and African horse sickness viruses. This study was conducted to survey Culicoides species in different parts of Ethiopia and to develop habitat suitability for the major Culicoides species in Ethiopia. Culicoides traps were set in different parts of the country from December 2018 to April 2021 using UV light Onderstepoort traps and the collected Culicoides were sorted to species level. To develop the species distribution model for the two predominant Culicoides species, namely Culicoides imicola and C. kingi, an ensemble modeling technique was used with the Biomod2 package of R software. KAPPA True skill statistics (TSS) and ROC curve were used to evaluate the accuracy of species distribution models. In the ensemble modeling, models which score TSS values greater than 0.8 were considered. Negative binomialregression models were used to evaluate the relationship between C. imicola and C. kingi catch and various environmental and climatic factors. During the study period, a total of 9148 Culicoides were collected from 66 trapping sites. Of the total 9148, 8576 of them belongs to seven species and the remaining 572 Culicoides were unidentified. The predominant species was C. imicola (52.8%), followed by C. kingi (23.6%). The abundance of these two species was highly influenced by the agro-ecological zone of the capture sites and the proximity of the capture sites to livestock farms. Climatic variables such as mean annual minimum and maximum temperature and mean annual rainfall were found to influence the catch of C. imicola at the different study sites. The ensemble model performed very well for both species with KAPPA (0.9), TSS (0.98), and ROC (0.999) for C. imicola and KAPPA (0.889), TSS (0.999), and ROC (0.999) for C. kingi. Culicoides imicola has a larger suitability range compared to C. kingi. The Great Rift Valley in Ethiopia, the southern and eastern parts of the country, and the areas along the Blue Nile and Lake Tana basins in northern Ethiopia were particularly suitable for C. imicola. High suitability for C. kingi was found in central Ethiopia and the Southern Nations, Nationalities and Peoples Region (SNNPR). The habitat suitability model developed here could help researchers better understand where the above vector-borne diseases are likely to occur and target surveillance to high-risk areas.Entities:
Mesh:
Year: 2022 PMID: 35902616 PMCID: PMC9334590 DOI: 10.1038/s41598-022-16911-y
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.996
Figure 1Map of Culicoides collection sites. The map was created using QGIS software v 3.22.2 (https://qgis.org/).
Total number of traps in each zone.
| Zones | Total number of traps | Total number of traps near animal farm | Total number of traps near water bodies | |
|---|---|---|---|---|
| Indoor (inside farms) | Outdoor (outside farms) | |||
| East Shewa | 13 | – | 6 | 7 |
| Hawassa town | 10 | – | 10 | – |
| Gamo Gofa | 8 | 1 | 2 | 5 |
| Wolayita | 8 | 6 | 2 | – |
| Borena | 6 | – | 4 | 2 |
| Konso | 1 | – | – | 1 |
| East Shewa | 4 | – | 4 | – |
| Oromia Special Zone | 10 | – | 10 | – |
| Jimma | 6 | – | 6 | – |
| Total | 66 | 7 | 44 | 15 |
Culicoides species collected across the study sites.
| Culicoides species | Collection sites | Number and % | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Hawassa town | East Shewa | Gamo Gofa | Wolayita | Borena | Segen Valley | Oromia Special Zone | Jimma | ||
| 1512 | 775 | 228 | 113 | 133 | 196 | 696 | 1177 | 4830 (52.8%) | |
| 142 | 4 | 23 | 2 | 419 | 316 | 328 | 926 | 2160 (23.6%) | |
| – | – | – | – | – | – | 289 | 533 | 822 (9%) | |
| 28 | 20 | – | – | 80 | 488 | – | – | 616 (6.8%) | |
| 89 | 41 | – | – | – | – | – | – | 130 (1.4%) | |
| 2 | 16 | 18 (0.2%) | |||||||
| Others | 5 | 16 | 98 | 17 | 161 | – | 275 | – | 572 (6.2%) |
| Total (%) | 1778 (19.4%) | 856 (9.3%) | 349 (4%) | 132 (1.4%) | 809 (9%) | 1000 (11%) | 1588 (17.4%) | 2636 (28.5%) | 9148 (100%) |
Culicoides species collected from different habitats.
| Culicoides species | Indoor | Lake shore | Animal pen | Near pond | Outdoor on field | River | Total count |
|---|---|---|---|---|---|---|---|
| 59 | 203 | 4251 | 49 | 72 | 196 | 4830 | |
| 1 | 64 | 1409 | 171 | 199 | 316 | 2160 | |
| – | – | 822 | – | – | – | 822 | |
| – | 7 | 121 | – | – | 488 | 616 | |
| – | 20 | 110 | – | – | – | 130 | |
| – | – | 18 | – | – | – | 18 | |
| Unidentified | 8 | 100 | 195 | – | 143 | – | 572 |
| Total (%) | 68 (0.74%) | 394 (4.3%) | 6926 (75.7%) | 220 (2.4%) | 414 (4.5%) | 1000 (11%) | 9148 (100%) |
Factors associated with C. imicola occurrence using multivariate negative binomial regression analysis.
| Factors | Number of traps | Total number of | Mean number of | Negative binomial regression coefficient | p-value |
|---|---|---|---|---|---|
| Arid | 22 | 2051 | 93.2 ± 98.3 | Ref | |
| Semi-Arid | 16 | 523 | 32.7 ± 104.1 | − 1.048 | 0.0103 |
| Sub-humid | 12 | 2256 | 188.0 ± 190.6 | 0.701 | 0.114 |
| Animal pen | 28 | 4205 | 150.2 ± 156.8 | Ref | |
| Indoor | 6 | 59 | 9.8 ± 12.5 | NA | NA |
| Outdoor | 2 | 72 | 36.0 ± 3.0 | − 45.19 | 0.000 |
| Water shorea | 14 | 494 | 35.3 ± 47.2 | − 0.80795 | 0.091 |
| Andosols | 4 | 183 | 45.8 ± 23.4 | Ref | |
| Fluvisols | 18 | 1661 | 92.3 ± 48.8 | 1.652 | 0.001 |
| Leptosols | 10 | 461 | 46.1 ± 13.2 | 1.021 | 0.177 |
| Luvisols | 5 | 212 | 42.4 ± 146.8 | NA | NA |
| Nitisols | 2 | 548 | 274 ± 52.3 | 26.857 | 0.000 |
| Vertisols | 11 | 1765 | 160.5 ± 113.4 | 0.828 | 0.561 |
aWater shore includes river side, near pond, and lake shore.
Factors associated with C. kingi occurrence using multivariate negative binomial regression analysis.
| Factors | Number of traps | Total number of | Mean number of | Negative binomial regression coefficient | p-value |
|---|---|---|---|---|---|
| Arid | 16 | 721 | 45.1 ± 77.9 | Ref | |
| Semi-Arid | 4 | 184 | 46.0 ± 72.2 | 4.885 | 0.000 |
| Sub-humid | 5 | 1255 | 251.0 ± 300.1 | 10.980 | 0.000 |
| Animal pen | 14 | 1409 | 100.6 ± 212.4 | Ref | |
| Indoor | 1 | 1 | 1.0 ± 0 | − 6.987 | 0.000 |
| Outdoor | 2 | 199 | 99.5 ± 9.5 | 9.950 | 0.000 |
| Water shorea | 8 | 551 | 68.9 ± 107.8 | 3.754 | 0.000 |
| Andosols | 1 | 4 | 4 ± 0 | Ref | |
| Fluvisols | 13 | 401 | 30.8 ± 8.6 | 3.182 | 0.000 |
| Leptosols | 1 | 320 | 320 ± 0 | 7.652 | 0.000 |
| Luvisols | 2 | 179 | 89.5 ± 43.2 | 2.735 | 0.000 |
| Nitisols | 2 | 328 | 164 ± 34 | − 1.033 | 0.541 |
| Vertisols | 4 | 928 | 232 ± 59.8 | 0.691 | 0.589 |
aWater shore includes river side, near pond, and lake shore.
Figure 2Probability of C. imicola occurrence in Ethiopia. Highly suitable areas are represented with red color while unsuitable areas are represented using blue colour. The map was created using QGIS software v 3.22.2 (https://qgis.org/).
Figure 3Probability of C. kingi occurrence in Ethiopia. Highly suitable areas are represented with red color while unsuitable areas are represented using blue color. The map was created using QGIS software v 3.22.2 (https://qgis.org/).
Variables contribution in the predicted distribution of C. imicola and C. kingi.
| Variables | Contribution (%) | |
|---|---|---|
| Soil type | 15.8 | 10.8 |
| Altitude | 12.5 | 10.6 |
| Livestock distribution | 12.5 | 7.4 |
| Solar radiation | 12.1 | 6.4 |
| Mean annual minimum temperature (°C) | 11.8 | 1.3 |
| Annual precipitation (mm) | 9.7 | 3.3 |
| Land cover | 8.9 | 3.3 |
| Water vapor pressure | 7.0 | 8.8 |
| Wind speed | 5.0 | 43.4 |
| Mean annual maximum temperature (°C) | 4.8 | 4.7 |