| Literature DB >> 35898699 |
Zhifei Hou1,2, Zhihui Yuan3, Hao Wang4, Kang Chang5, Yong Gao1.
Abstract
Background: COPD is a respiratory disease caused by a combination of genetic and environmental factors. Polymorphism, as a genetic factor, can affect the susceptibility of the disease of COPD. In this study, we assessed the relationship between the polymorphisms of three genes and COPD risk in a Chinese Han population. Patients andEntities:
Keywords: COPD; SMAD4 rs10502913; chronic obstructive pulmonary disease; polymorphism; risk; similar to mother against decapentaplegic 4
Mesh:
Substances:
Year: 2022 PMID: 35898699 PMCID: PMC9309323 DOI: 10.2147/COPD.S362467
Source DB: PubMed Journal: Int J Chron Obstruct Pulmon Dis ISSN: 1176-9106
Demographic and Selected Variables Among the COPD Cases and Control Subjects
| Variables | COPD (N=376) | Control (284) | P | ||
|---|---|---|---|---|---|
| N | % | N | % | ||
| Age (years) | 69.74±10.40 | 62.00±10.91 | <0.001 | ||
| BMI | 22.8±3.40 | 23.3±3.50 | 0.127 | ||
| Smoking index | 34.61±26.46 | 22.86±21.76 | 0.027 | ||
| Smoking status | <0.001 | ||||
| Former | 216 | 57.4 | 99 | 34.8 | |
| Current | 121 | 32.2 | 113 | 39.8 | |
| Never | 39 | 10.4 | 72 | 25.4 | |
| Pulmonary function | |||||
| FVC observed (L) | 2.61±0.89 | 3.58±0.81 | |||
| FEV1 observed (L) | 1.47±0.69 | 2.74±0.66 | |||
| FEV1% predicted | 54.28±22.68 | 89.29±16.07 | |||
| FEV1/FVC (%) | 54.29±11.09 | 76.53±4.60 | |||
Note: Data are presented as mean ±SD.
Abbreviations: N, number of subjects; FEV1, forced expiratory volume in one second; FVC, forced vital capacity; COPD, chronic obstructive pulmonary disease; BMI, body mass index.
Primary Information of Genotyped SNPs
| Gene | SNP | Chromosomal Position | Base | MAF | HWE P | |
|---|---|---|---|---|---|---|
| Cases | Controls | |||||
| SMAD4 | rs10502913 | chr18:51041901 | G>A | 0.286 | 0.327 | 0.592 |
| IL-4 | rs2070874 | chr5:132674018 | C>T | 0.239 | 0.204 | 0.975 |
| HSPA1L | rs2227956 | chr6:31810495 | G>A | 0.159 | 0.188 | 0.851 |
Abbreviations: HWE, Hardy-Weinberg equilibrium; SNP, single nucleotide polymorphism; MAF, minor allele frequency.
Distributions of Genotypes of Different Genes Their Associations with Risk of COPD
| Variables | COPD | Controls | P | COR (95% CI) | AOR (95% CI) | ||
|---|---|---|---|---|---|---|---|
| N | % | N | % | ||||
| SMAD4 rs10502913 | 376 | 284 | |||||
| AA | 23 | 6.1 | 35 | 12.3 | 0.022 | 1.00 | 1.00 |
| AG | 169 | 44.9 | 116 | 40.8 | 0.007 | 2.217 (1.245–3.947) | 2.218 (1.204–4.151) |
| GG | 184 | 48.9 | 133 | 46.8 | 0.011 | 2.105 (1.189–3.728) | 2.235 (1.198–4.104) |
| A allele | 215 | 28.6 | 186 | 32.7 | 0.104 | 1.00 | |
| G allele | 537 | 71.4 | 382 | 67.3 | 1.216 (0.960–1.540) | ||
| IL-4 rs2070874 | 375 | 282 | |||||
| CC | 20 | 5.3 | 11 | 3.9 | 0.321 | 1.00 | 1.00 |
| CT | 139 | 37.1 | 93 | 33.3 | 0.623 | 0.822 (0.376–1.795) | 0.612 (0.264–1.419) |
| TT | 216 | 57.6 | 178 | 63.1 | 0.298 | 0.667 (0.312–1.430) | 0.549 (0.242–1.246) |
| C allele | 179 | 23.9 | 115 | 20.4 | 0.134 | 1.00 | |
| T allele | 571 | 76.1 | 449 | 79.6 | 0.817 (0.627–1.065) | ||
| HSPA1L rs2227956 | 375 | 284 | |||||
| AA | 267 | 71.2 | 185 | 65.1 | 0.220 | 1.00 | 1.00 |
| AG | 97 | 25.9 | 91 | 32.0 | 0.082 | 0.739 (0.525–1.040) | 0.790 (0.545–1.146) |
| GG | 11 | 2.9 | 8 | 2.8 | 0.919 | 0.953 (0.376–2.414) | 1.130 (0.417–3.058) |
| A allele | 631 | 84.1 | 461 | 81.2 | 0.156 | 1.00 | |
| G allele | 119 | 15.9 | 107 | 18.8 | 0.813 (0.610–1.083) | ||
Note: P-values were calculated with Pearson’s χ2 tests.
Abbreviations: COPD, chronic obstructive pulmonary disease; COR, crude odds ratio; AOR, adjusted odds ratio; CI, confidence interval; N, number of subjects.
Analyses the Genotypes of SMAD4 rs10502913 Polymorphism and COPD Risk Stratified by Smoking Status and Age
| Variables | Controls/Cases | Genotypes (Controls/Cases) | Pa | AOR (95% CI) | Pb | AOR (95% CI) | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| AG | GG | AA | |||||||||
| N | % | N | % | N | % | ||||||
| Total | 284/376 | 116/169 | 40.8/44.9 | 133/184 | 46.8/48.9 | 35/23 | 12.3/6.1 | 0.011 | 2.218 (1.204–4.151) | 0.011 | 2.235 (1.198–4.104) |
| Smoking status | |||||||||||
| NO | 72/39 | 36/14 | 50.0/35.9 | 23/22 | 31.9/56.4 | 13/3 | 18.1/7.7 | 0.587 | 1.498 (0.349–6.431) | 0.063 | 3.949 (0.930–16.771) |
| YES | 212/337 | 80/155 | 37.7/46.0 | 110/162 | 51.9/48.1 | 22/20 | 10.4/5.9 | 0.021 | 2.269 (1.132–4.548) | 0.076 | 1.862 (0.936–3.703) |
| Smoking years | |||||||||||
| <30 | 151/105 | 70/41 | 46.4/39.0 | 54/57 | 35.8/54.3 | 27/7 | 17.9/6.7 | 0.135 | 2.125 (0.791–5.714) | 0.009 | 3.751 (1.398–10.062) |
| ≥30 | 133/271 | 46/128 | 34.6/47.2 | 75/127 | 56.4/46.9 | 12/16 | 9.0/5.9 | 0.077 | 2.131 (0.922–4.922) | 0.382 | 1.442 (0.634–3.280) |
| Smoking index | |||||||||||
| ≤20 | 173/124 | 79/45 | 45.7/36.3 | 68/71 | 39.3/57.3 | 26/8 | 15.0/6.4 | 0.124 | 2.078 (0.817–5.284) | 0.003 | 4.003 (1.597–10.032) |
| >20 | 111/252 | 37/124 | 33.3/49.2 | 65/113 | 58.6/44.8 | 9/15 | 8.1/6.0 | 0.101 | 2.156 (0.860–5.402) | 0.616 | 1.263 (0.508–3.124) |
| Age | |||||||||||
| <60 | 130/69 | 51/25 | 39.2/36.2 | 67/40 | 51.5/58.0 | 12/4 | 9.2/5.8 | 0.655 | 1.332 (0.378–4.693) | 0.557 | 1.446 (0.422–4.951) |
| ≥60 | 154/307 | 65/144 | 42.2/46.9 | 66/144 | 42.9/46.9 | 23/19 | 14.9/6.2 | 0.007 | 2.599 (1.304–5.176) | 0.009 | 2.519 (1.266–5.015) |
Notes: P-values were calculated by unconditional logistic regression adjusted for age, smoking status and smoking years. PaStatistically significant difference between AA and AG; PbStatistically significant difference between AA and GG; YES: including current smoking and former smoking.
Abbreviations: AOR, adjusted odds ratio; CI, confidence interval; N, number of subjects.
Analyses the Genotypes of SMAD4 rs10502913 Polymorphism and COPD Risk Stratified by Severity
| Variables | Cases | Genotypes (Controls/Cases) | Pa | AOR (95% CI) | Pb | AOR (95% CI) | ||
|---|---|---|---|---|---|---|---|---|
| AG | GG | AA | ||||||
| N | N | N | ||||||
| Total | 376 | 116/169 | 133/184 | 35/23 | 0.011 | 2.218 (1.204–4.151) | 0.011 | 2.235 (1.198–4.104) |
| Severity | ||||||||
| GOLD I | 66 | 116/26 | 133/37 | 35/3 | 0.103 | 2.921 (0.806–10.579) | 0.046 | 3.628 (1.022–12.885) |
| GOLD II | 139 | 116/60 | 133/71 | 35/8 | 0.540 | 2.370 (0.986–5.685) | 0.049 | 2.394 (1.004–5.710) |
| GOLD III | 108 | 116/54 | 133/47 | 35/7 | 0.047 | 2.532 (1.012–6.336) | 0.178 | 1.886 (0.749–4.749) |
| GOLD IV | 63 | 116/29 | 133/29 | 35/5 | 0.261 | 1.833 (0.637–5.276) | 0.476 | 1.470 (0.509–4.243) |
Notes: P-values were calculated by unconditional logistic regression adjusted for age, smoking status and smoking years. PaStatistically significant difference between AA and AG; PbStatistically significant difference between AA and GG.
Abbreviations: AOR, adjusted odds ratio; CI, confidence interval; N number of subjects.