| Literature DB >> 35893486 |
Fatine Ali Messiad1,2, Nesrine Ammouchi2,3, Youghourta Belhocine1, Hanan Alhussain4, Monira Galal Ghoniem4, Ridha Ben Said5,6, Fatima Adam Mohamed Ali4, Seyfeddine Rahali5.
Abstract
Sulfur mustard (SM) is a harmful warfare agent that poses a serious threat to human health and the environment. Thus, the design of porous materials capable of sensing and/or capturing SM is of utmost importance. In this paper, the interactions of SM and its derivatives with ethylpillar[5]arene (EtP[5]) and the interactions between SM and a variety of host macrocycles were investigated through molecular docking calculations and non-covalent interaction (NCI) analysis. The electronic quantum parameters were computed to assess the chemical sensing properties of the studied hosts toward SM. It was found that dispersion interactions contributed significantly to the overall complexation energy, leading to the stabilization of the investigated systems. DFT energy computations showed that SM was more efficiently complexed with DCMP[5] than the other hosts studied here. Furthermore, the studied macrocyclic containers could be used as host-based chemical sensors or receptors for SM. These findings could motivate experimenters to design efficient sensing and capturing materials for the detection of SM and its derivatives.Entities:
Keywords: DFT-D4; inclusion complex; macrocycles; non-covalent interactions; sensing; sulfur mustard
Year: 2022 PMID: 35893486 PMCID: PMC9329917 DOI: 10.3390/nano12152517
Source DB: PubMed Journal: Nanomaterials (Basel) ISSN: 2079-4991 Impact factor: 5.719
Figure 1Optimized molecular structures of the guests: SM, S1, S2, S3, S4, and S5. Atom colors: chlorine (green); oxygen (red); carbon (grey); sulfur (yellow) and hydrogen (white).
Experimental and computed nearest intermolecular distances (Å) of SM@EtP[5] complex. (The values in brackets represent the difference between the computed and the experimental distances).
| Interaction | Interaction | r2SCAN-3c | Exp. [ | Gas-Phase Optimized Geometries |
|---|---|---|---|---|
| C–H···π | Ba | 2.82 (0.01) | 2.81 |
|
| Bb | 2.55 (0.13) | 2.68 | ||
| Bc | 2.56 (0.18) | 2.74 | ||
| Bd | 2.70 (0.26) | 2.96 | ||
| ∆B | 0.58 | - | ||
| C–H···Cl | Be | 3.02 (0.20) | 3.22 |
|
| Bf | 3.05 (0.03) | 3.08 | ||
| Bg | 3.35 (0.01) | 3.34 | ||
| Bh | 3.14 (0.06) | 3.20 | ||
| Bi | 3.19 (0.04) | 3.15 | ||
| Bj | 3.34 (0.02) | (3.32) | ||
| ∆B | 0.36 | - | ||
| C–H···S | Bk | 3.24 (0.08) | 3.32 |
|
| Bl | 3.01 (0.11) | 3.12 | ||
| Bm | 3.18 (0.02) | 3.16 | ||
| ∆B | 0.21 | - |
Calculated complexation and dispersion-corrected energies (kJ/mol) and experimental values of association constants in M−1.
| Complex | r2SCAN-3c | r2SCAN-3c | r2SCAN-3c Gas Phase Dispersion Energy | Association Constants (M−1) [ |
|---|---|---|---|---|
| SM@EtP[5] | −141 | −114.44 | −55.48 | 6.2 × 103 |
| S1@EtP[5] | −122.74 | −105.69 | −51.03 | 2.9 × 102 |
| S2@EtP[5] | −133.76 | −113.01 | −50.31 | 1.3 × 103 |
| S3@EtP[5] | −110.36 | −97.43 | −46.66 | 67 |
| S4@EtP[5] | −144.92 | −118.35 | −53.72 | 1.8 × 104 |
| S5@EtP[5] | −119.69 | −103.09 | −50.09 | 7.9 × 102 |
Calculated chemical parameters for EtP[5] and all complexes using r2SCAN-3c in the gas phase.
| Complex | HOMO (eV) | LUMO (eV) | |H-L| gap (eV) | |ΔEg| % | µ (Debye) |
|---|---|---|---|---|---|
| EtP[5] | −4.38 | −0.87 | 3.51 | - | 0.06 |
| SM@EtP[5] | −4.44 | −1.06 | 3.38 | 3.85 | 3.44 |
| S1@EtP[5] | −4.43 | −0.95 | 3.48 | 0.84 | 1.87 |
| S2@EtP[5] | −4.47 | −1.01 | 3.46 | 1.42 | 0.88 |
| S3@EtP[5] | −4.41 | −0.97 | 3.44 | 1.99 | 1.87 |
| S4@EtP[5] | −4.44 | −1.07 | 3.37 | 3.99 | 2.11 |
| S5@EtP[5] | −4.43 | −0.98 | 3.45 | 1.71 | 1.82 |
Figure 2NCI-RDG isosurfaces (isovalue 0.5 a.u.) (left) and scatter plots (right) of SM@EtP[5], S1@EtP[5], S2@EtP[5], S3@EtP[5], S4@EtP[5], and S5@EtP[5].
Figure 3Coordinate systems of the complexation process of SM and eight macrocyclic molecules and the molecular structures of the most stable host-guest complexes. Atom colors: chlorine (green); oxygen (red); carbon (grey); sulfur (yellow); nitrogen (blue) and hydrogen (white).
Complexation energies (kJ/mol) between SM and the eight studied macrocycles calculated with r2SCAN-3c in the gas phase.
| Position (Å) | SM@P[5] | SM@MeP[5] | SM@DCMP[5] | SM@P[5]Q | SM@DAP[5] | SM@CB[6] | SM@CX[5] | SM@β-CD |
|---|---|---|---|---|---|---|---|---|
| −10 | −54.25 | −29.41 | −83.32 | −90.51 | −44.74 | −72.12 | −32.35 | −56.82 |
| −8 | −77.19 | −109.80 | −121.57 | −74.96 | −71.12 | −68.88 | −32.77 | −52.10 |
| −6 | −77.28 | −110.00 | −121.66 | −90.53 | −114.52 | −75.41 | −51.72 | −51.61 |
| −4 | −123.65 | −109.99 | −118.70 | −87.29 | −112.35 | −96.42 | - | −54.82 |
| −2 | −126.79 | −110.00 | −120.90 | −85.67 | −116.51 | −96.44 | - | −55.36 |
| 0 | −123.62 | −113.16 | −155.26 | −86.63 | −112.37 | −96.80 | - | −79.49 |
| +2 | −101.89 | −109.90 | −128.54 | −90.23 | −114.22 | −95.76 | - | −89.07 |
| +4 | −101.97 | −109.92 | −118.63 | −90.38 | −114.18 | −96.94 | - | −87.11 |
| +6 | −101.67 | −109.93 | −122.04 | −90.33 | −114.32 | −75.28 | −71.41 | −85.58 |
| +8 | −99.42 | −109.66 | −80.91 | −90.77 | −37.20 | −69.12 | −71.42 | −81.01 |
| +10 | −99.40 | −29.50 | −85.44 | −90.69 | −96.49 | −73.44 | −53.95 | −78.78 |
Figure 4CH···π, CH···Cl and CH···O hydrogen bonding interactions in the complex SM@DCMP[5].
Calculated HOMO, LUMO, HOMO-LUMO energy gap and the percentage of variation of HOMO–LUMO gap of studied complexes with r2SCAN-3c in gas phase.
| Host/Complex | Electronic Chemical Parameters | |||
|---|---|---|---|---|
| EHOMO (eV) | ELUMO (eV) | |ΔE|gap (eV) | ∆Eg % | |
| β-CD | −6.14 | −0.03 | 6.11 | 23.73 |
| SM@β-CD | −5.98 | −1.32 | 4.66 | |
| CB[6] | −5.82 | −0.07 | 5.75 | 30.78 |
| SM@CB[6] | −4.21 | −0.23 | 3.98 | |
| P[5] | −4.54 | −1.49 | 3.05 | 0.00 |
| SM@P[5] | −4.70 | −1.65 | 3.05 | |
| MeP[5] | −4.44 | −0.92 | 3.52 | 6.82 |
| SM@MeP[5] | −4.40 | −1.12 | 3.28 | |
| DCMP[5] | −5.10 | −1.79 | 3.31 | 4.83 |
| SM@DCMP[5] | −5.23 | −1.76 | 3.47 | |
| DAP[5] | −4.56 | −3.01 | 1.55 | 9.03 |
| SM@DAP[5] | −4.56 | −2.87 | 1.69 | |
| CX[5] | −5.44 | −1.26 | 4.18 | 14.35 |
| SM@CX[5] | −5.14 | −1.56 | 3.58 | |
| P[5]Q | −6.68 | −4.73 | 1.95 | 51.28 |
| SM@P[5]Q | −5.88 | −4.93 | 0.95 | |
Figure 5The frontier molecular orbitals (HOMO and LUMO) of SM@β-CD, SM@CB[6], SM@CX[5], and SM@P[5]Q obtained from r2SCAN-3c gas-phase calculations. Atom colors: chlorine (green); oxygen (red); carbon (grey); sulfur (yellow); nitrogen (blue) and hydrogen (white).
Figure 6NCI-RDG isosurface (isovalue 0.5 a.u.) (left) and scatter plot (right) of SM@DCMP[5].