Literature DB >> 35885107

Formalising the Pathways to Life Using Assembly Spaces.

Stuart M Marshall1, Douglas G Moore2, Alastair R G Murray1, Sara I Walker2,3, Leroy Cronin1.   

Abstract

Assembly theory (referred to in prior works as pathway assembly) has been developed to explore the extrinsic information required to distinguish a given object from a random ensemble. In prior work, we explored the key concepts relating to deconstructing an object into its irreducible parts and then evaluating the minimum number of steps required to rebuild it, allowing for the reuse of constructed sub-objects. We have also explored the application of this approach to molecules, as molecular assembly, and how molecular assembly can be inferred experimentally and used for life detection. In this article, we formalise the core assembly concepts mathematically in terms of assembly spaces and related concepts and determine bounds on the assembly index. We explore examples of constructing assembly spaces for mathematical and physical objects and propose that objects with a high assembly index can be uniquely identified as those that must have been produced using directed biological or technological processes rather than purely random processes, thereby defining a new scale of aliveness. We think this approach is needed to help identify the new physical and chemical laws needed to understand what life is, by quantifying what life does.

Entities:  

Keywords:  biosignatures; complexity; graphs; information

Year:  2022        PMID: 35885107      PMCID: PMC9323097          DOI: 10.3390/e24070884

Source DB:  PubMed          Journal:  Entropy (Basel)        ISSN: 1099-4300            Impact factor:   2.738


  10 in total

1.  Objects that make objects: the population dynamics of structural complexity.

Authors:  James P Crutchfield; Olof Görnerup
Journal:  J R Soc Interface       Date:  2006-04-22       Impact factor: 4.118

2.  A self-replicating peptide.

Authors:  D H Lee; J R Granja; J A Martinez; K Severin; M R Ghadiri
Journal:  Nature       Date:  1996-08-08       Impact factor: 49.962

3.  Organic synthesis in a modular robotic system driven by a chemical programming language.

Authors:  Sebastian Steiner; Jakob Wolf; Stefan Glatzel; Anna Andreou; Jarosław M Granda; Graham Keenan; Trevor Hinkley; Gerardo Aragon-Camarasa; Philip J Kitson; Davide Angelone; Leroy Cronin
Journal:  Science       Date:  2018-11-29       Impact factor: 47.728

4.  Bayesian approach to SETI.

Authors:  Claudio Grimaldi; Geoffrey W Marcy
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-01       Impact factor: 11.205

Review 5.  The algorithmic origins of life.

Authors:  Sara Imari Walker; Paul C W Davies
Journal:  J R Soc Interface       Date:  2012-12-12       Impact factor: 4.118

6.  Identifying molecules as biosignatures with assembly theory and mass spectrometry.

Authors:  Stuart M Marshall; Cole Mathis; Emma Carrick; Graham Keenan; Geoffrey J T Cooper; Heather Graham; Matthew Craven; Piotr S Gromski; Douglas G Moore; Sara I Walker; Leroy Cronin
Journal:  Nat Commun       Date:  2021-05-24       Impact factor: 14.919

7.  Constructor theory of life.

Authors:  Chiara Marletto
Journal:  J R Soc Interface       Date:  2015-03-06       Impact factor: 4.118

8.  A probabilistic framework for identifying biosignatures using Pathway Complexity.

Authors:  Stuart M Marshall; Alastair R G Murray; Leroy Cronin
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-12-28       Impact factor: 4.226

9.  Universal scaling across biochemical networks on Earth.

Authors:  Hyunju Kim; Harrison B Smith; Cole Mathis; Jason Raymond; Sara I Walker
Journal:  Sci Adv       Date:  2019-01-16       Impact factor: 14.136

Review 10.  Bacteria as computers making computers.

Authors:  Antoine Danchin
Journal:  FEMS Microbiol Rev       Date:  2008-11-07       Impact factor: 16.408

  10 in total
  2 in total

1.  Ladderpath Approach: How Tinkering and Reuse Increase Complexity and Information.

Authors:  Yu Liu; Zengru Di; Philip Gerlee
Journal:  Entropy (Basel)       Date:  2022-08-05       Impact factor: 2.738

Review 2.  Defending and integrating an organism by the immune system.

Authors:  Zlatko Dembic
Journal:  Scand J Immunol       Date:  2022-05       Impact factor: 3.889

  2 in total

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