| Literature DB >> 35883160 |
Jinfeng Han1,2, Ya Li1,3, Ya You1,3, Ke Fan1,3, Bo Lei4,5,6.
Abstract
PURPOSE: To describe the genetic and clinical features of nineteen patients from eleven unrelated Chinese pedigrees with OPA1-related autosomal dominant optic atrophy (ADOA) and define the phenotype-genotype correlations.Entities:
Keywords: ADOA; Chinese; OPA1; Optic nerve; Targeted next-generation sequencing; Variant
Mesh:
Substances:
Year: 2022 PMID: 35883160 PMCID: PMC9327245 DOI: 10.1186/s12886-022-02546-0
Source DB: PubMed Journal: BMC Ophthalmol ISSN: 1471-2415 Impact factor: 2.086
Clinical characteristics of the ADOA patients in the study
| Patient | Sex | Onset Age (y) | Age at | BCVA (OD/OS) | ONH | RNFL (OD/OS) | VF | VEP | Brain |
|---|---|---|---|---|---|---|---|---|---|
| F1-I:1 | M | NA | 64 | 0.05/0.01 | TP | TT | CS | NA | NA |
| F1-II:3 | F | NA | 34 | 0.4/0.2 | TP | TT | CS | NA | NA |
| F1-III:3 | M | 5 | 5 | 0.5/0.5 | DP | DT | NA | NA | N |
| F2-I:1 | M | NA | 42 | 1.0/1.0 | N | N | NA | NA | NA |
| F2-II:2 | F | 7 | 7 | 0.2/0.2 | DP | DT | CS | PL | N |
| F3-II:2 | M | NA | 33 | 0.25/0.3 | TP | TT | NA | NA | NA |
| F3-III:3 | M | 6 | 6 | 0.25/0.25 | TP | TT | NA | NA | NA |
| F4-III:1 | F | 10 | 10 | 0.3/0.25 | TP | NA | NA | NA | NA |
| F5-III:1 | M | NA | 35 | 0.5/0.5 | TP | NA | NA | NA | NA |
| F5-IV:1 | M | 8 | 11 | 0.3/0.2 | TP | TT | CS, PS | PL, DA | NA |
| F6-II:2 | F | 7 | 12 | 0.2/0.2 | TP | TT | CS | DA | N |
| F7-III:3 | M | 24 | 24 | 0.2/0.25 | TP | TT | S↓ | DA | NA |
| F8-I:1 | M | NA | 36 | 1.0/1.0 | N | NA | NA | NA | NA |
| F8-II:1 | M | 5 | 7 | 0.1/0.1 | TP | NA | S↓ | NA | N |
| F9-III:3 | F | 3 | 33 | 0.12/0.12 | TP | TT | NA | NA | NA |
| F9-IV:2 | F | 5 | 6 | 0.25/0.15 | TP | TT | NA | PL, DA | NA |
| F10-III:1 | F | 12 | 35 | 0.4/0.4 | TP | TT | NA | NA | NA |
| F10-III:3 | F | NA | 29 | 0.3/0.4 | TP | TT | NA | NA | NA |
| F10-IV:1 | M | 5 | 5 | 0.5/0.4 | TP | TT | NA | NA | N |
| F11-II:2 | F | 3 | 29 | 0.01/FC | TP | TT | TH | PL, DA | N |
| F11-III:1 | F | 3 | 4 | NA | TP | TT | NA | NA | NA |
BCVA best corrected visual acuity, ONH optic nerve head, RNFL retinal nerve fiber layer, VF visual field, VEP visual evoked potential, MRI magnetic resonance imaging, M male, F female, NA not available, TP temporal pallor, DP diffuse pallor, DT diffuse thinning, TT temporal thinning, CS central scotoma, PS paracentral scotoma, S sensitivity, TH temporal hemianopsia, PL prolonged latencies, DA diminished amplitudes, N normal
Fig. 1Clinical features of a representative DOA patient, F6-II:2. A fundus images, temporal pallor of the ONH; B OCT, thinning inner retinal neuroepithelial layer, C diffuse thinning of the RNFL. OD, the blue solid line, OS, the purple solid line. D central scotoma
Fig. 2Pedigrees and sequencing results of the 11 OPA1-related ADOA families. A F1-I:1, F1-II:3 and F1-III:3 carried the heterozygous c.2787_2794del8 variant. B F2-I:1 and F2-II:2 carried the heterozygous c.2708_2711delTTAG variant. C F3-II:2 and F3-III:3 carried the heterozygous c.2496G > A variant. D F4-III:1 carried the de novo heterozygous c.984 + 1_984 + 2delGT variant. E F5-III:1 and F5-IV:1 carried the heterozygous c.1283A > C (p.N428T) variant. F F6-II:2 carried the heterozygous c.2830G > T variant. G F7-III:3 carried the heterozygous c.1065 + 5G > C variant. H F8-I:1 and F8-II:1 carried the heterozygous c.1937C > G variant. I F9-III:3 and F9-IV:2 carried the heterozygous c.1194 + 2 T > C variant. J F10-III:1, F10-III:3 and F10-IV:1 carried the heterozygous c.112C > T variant. K F11-II:2 and F11-III:1 carried the heterozygous c.1316-10 T > G variant
Fig. 3All 11 OPA1 mutations identified in this study are shown in the schematic diagram of the OPA1 gene (Ref. NM_015560.2, below) and OPA1 protein (above). Missense, splicing, stop-gain and frameshift deletion mutations are coloured in black, blue, red and yellow, respectively. CC, coiled coil domain; GE, GTPase effector domain
OPA1 variants identified from 11 unrelated Chinese ADOA families and pathogenicity analyses
| family ID | Position | Nucleotide change | Protein | Mutation | SIFT | MutationTaster | PROVEAN | Net Gene2 | CADD | gnomAD | ExAc | 1000 Genomes | ACMG | Evidence | Novel | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_015560.2 | NM_130837.2 | |||||||||||||||
| F1 | Exon 27 | c.2787_2794del | c.2952_2959del | p.T929Tfs | frameshift deletion | - | DC(1) | - | - | - | - | - | - | P | PVS1 + PM2 + PP1 | Y |
| F2 | Exon 27 | c.2708_2711del | c.2873_2876del | p.V903Gfs | frameshift deletion | - | DC(1) | - | - | - | 3.658E-5 | 3.369E-5 | - | P | PVS1 + PS4 + PM1 + PM2 | N |
| F3 | Exon 24 | c.2496G > A | c.2661G > A | p.L832L | splicing | - | DC(1) | - | SSC | D(28) | - | - | - | VUS | PM2 + PP3 + PP4 | Y |
| F4 | Intron 9 | c.984 + 1_984 + 2del | c.1149 + 1_1149 + 2del | - | splicing | - | DC(1) | - | SSC | - | - | - | - | P | PVS1 + PM6 + PM2 | Y |
| F5 | Exon 13 | c.1283A > C | c.1448A > C | p.N428T | missense | D(0.003) | DC(1) | D(-5.74) | - | D(27.7) | - | - | - | VUS | PM2 + PP3 + PP4 | Y |
| F6 | Exon 28 | c.2830G > T | c.2995G > T | p.E944X | stop-gain | - | DC(1) | - | - | D(54) | - | - | - | P | PVS1 + PM2 + PP4 | Y |
| F7 | Intron 10 | c.1065 + 5G > C | c.1230 + 5G > C | - | splicing | - | DC(1) | - | SSC | D(26.3) | - | - | - | VUS | PM2 + PP3 + PP4 | Y |
| F8 | Exon 20 | c.1937 C > G | c.2102C > G | p.S646X | stop-gain | - | DC(1) | - | - | D(41) | - | - | - | P | PVS1 + PM2 + PP4 | Y |
| F9 | Intron 12 | c.1194 + 2 T > C | c.1305 + 2 T > C | - | splicing | - | DC(1) | - | SSC | D(32) | - | - | - | P | PVS1 + PM2 + PP4 | Y |
| F10 | Exon 2 | c.112C > T | c.112C > T | p.R38X | stop-gain | - | DC(1) | - | - | D(38) | - | - | - | P | PVS1 + PM2 + PP1 + PP4 | N |
| F11 | Intron 13 | C.1316-10 T > G | c.1478-10 T > G | - | splicing | - | DC(1) | - | SSC | D(29) | - | - | - | LP | PM6 + PM2 + + PP3 + PP4 | Y |
D deleterious (<0.05), DC disease causing, SSC splicing site change, P pathogenic, LP, likely pathogenic, VUS variant of uncertain significance, − not available