| Literature DB >> 35873639 |
Noha Saleh Gholais1,2, Chunrui Shi1, Jing Zhang1,2, Bei Liao1,2, Rowida A Albarmaqi3, Xiaolong Tang2, Leyuan Mi2.
Abstract
Background: JinGuanLan (JGL) formula is a traditional Chinese medicine (TCM) developed by the Department of Pharmacology at the First Hospital of Lanzhou University. The network pharmacology approach was applied to determine the potential active compounds, therapeutic targets, and main pathways of the JGL formula to evaluate its application value in acne vulgaris.Entities:
Year: 2022 PMID: 35873639 PMCID: PMC9300327 DOI: 10.1155/2022/6944792
Source DB: PubMed Journal: Evid Based Complement Alternat Med ISSN: 1741-427X Impact factor: 2.650
Figure 1Graphical abstract of the network pharmacology approach.
Number of active compounds and associated targets in each herb of the JGL formula.
| Herbal Name | Compounds Number | Target genes number |
|---|---|---|
| Jinyinhua (JYH) | 17 | 437 |
| Gancao (GC) | 88 | 1738 |
| Banlangen (BLG) | 35 | 322 |
| Guanzhong (GZ) | 5 | 101 |
| Huangqi (HQ) | 17 | 450 |
Figure 2“Herb-compound-target” network of the JGL formula. The nodes that represent active compounds are polychrome circles. The orange squares represent the targets, and the blue triangles represent the compounds in the five herbs.
Basic information of the top 10 active compounds in JGL according to their degree values.
| MO ID | Compound Name | Degree | OB (%) | DL | Medicine | 2D structure∗ |
|---|---|---|---|---|---|---|
| MOL000098 | Quercetin | 456 | 46.43 | 0.28 | JYH, GC, and HQ |
|
| MOL000422 | Kaempferol | 248 | 41.88 | 0.24 | JYH, GC, HQ, and GZ |
|
| MOL000392 | Formononetin | 78 | 69.67 | 0.21 | GC and HQ |
|
| MOL000358 | Beta-sitosterol | 74 | 36.91 | 0.75 | JYH and BLG |
|
| MOL000354 | Isorhamnetin | 72 | 49.6 | 0.31 | GC and HQ |
|
| MOL000449 | Stigmasterol | 62 | 43.83 | 0.76 | JYH and BLG |
|
| MOL000006 | Luteolin | 57 | 36.16 | 0.25 | JYH |
|
| MOL000378 | 7-O-methylisomucronulatol | 45 | 74.69 | 0.3 | HQ |
|
| MOL000417 | Calycosin | 44 | 47.75 | 0.24 | GC and HQ |
|
| MOL003896 | 7-Methoxy-2-methyl isoflavone | 43 | 42.56 | 0.2 | GC |
|
Cited from the DrugBank database.
Figure 3Venn diagram of the JGL- and acne vulgaris-related targets.
Figure 4Protein-protein interaction (ppi) network. (a) Ppi network of 97 potential therapeutic targets. The change of node size or colour from red to yellow indicates the change in degree value from high to low. (b) Top 10 targets of three topological features, degree, mcc, and epc.
Core targets with related compounds.
| Core targets | Related compounds | Degree | MCC | EPC |
|---|---|---|---|---|
| STAT3 | Licochalcone a | 35 | 25062 | 39.842 |
| TNF | Kaempferol, quercetin, luteolin, isovitexin, | 30 | 21311 | 38.838 |
| JUN | Kaempferol, quercetin,beta-sitosterol, luteolin, formononetin, beta-carotene | 29 | 18028 | 39.104 |
| IL6 | Quercetin, luteolin | 26 | 21300 | 37.957 |
| MAPK1 | Quercetin, luteolin, naringenin, licochalcone a | 23 | 13040 | 37.997 |
| MAPK3 | Naringenin | 21 | 13038 | 37.577 |
Top 10 terms of BP, CC, and MF GO enrichment analysis.
| Category | Term |
|
| Count |
|---|---|---|---|---|
| GO-BP | Response to lipopolysaccharide | 6.85 | 1.09 | 29 |
| GO-BP | Response to molecule of bacterial origin | 4.36 | 3.01 | 29 |
| GO-BP | Cellular response to chemical stress | 6.02 | 3.01 | 29 |
| GO-BP | Reactive oxygen species metabolic process | 7.59 | 3.01 | 27 |
| GO-BP | Muscle cell proliferation | 2.30 | 7.30 | 24 |
| GO-BP | Regulation of inflammatory response | 1.38 | 3.32 | 28 |
| GO-BP | Response to nutrient levels | 1.47 | 3.32 | 29 |
| GO-BP | Cellular response to oxidative stress | 3.27 | 6.48 | 25 |
| GO-BP | Response to oxidative stress | 1.06 | 1.87 | 28 |
| GO-BP | Response to steroid hormone | 4.95 | 7.86 | 25 |
| GO-CC | Vesicle lumen | 8.43 | 5.09 | 14 |
| GO-CC | Membrane raft | 8.77 | 5.09 | 14 |
| GO-CC | Membrane microdomain | 9.12 | 5.09 | 14 |
| GO-CC | Membrane region | 1.50 | 6.29 | 14 |
| GO-CC | Caveola | 7.19 | 2.41 | 8 |
| GO-CC | Secretory granule lumen | 6.59 | 1.80 | 12 |
| GO-CC | Cytoplasmic vesicle lumen | 7.54 | 1.80 | 12 |
| GO-CC | Plasma membrane raft | 9.11 | 1.91 | 8 |
| GO-CC | Collagen-containing extracellular matrix | 8.71 | 0.000161924 | 11 |
| GO-CC | RNA polymerase II transcription regulator complex | 1.55 | 0.00025964 | 7 |
| GO-MF | Nuclear receptor activity | 4.08 | 4.34 | 12 |
| GO-MF | Ligand-activated transcription factor activity | 4.08 | 4.34 | 12 |
| GO-MF | Cytokine activity | 1.59 | 1.13 | 15 |
| GO-MF | Cytokine receptor binding | 1.23 | 6.55 | 15 |
| GO-MF | Steroid hormone receptor activity | 5.60 | 2.38 | 7 |
| GO-MF | Receptor ligand activity | 7.57 | 2.68 | 18 |
| GO-MF | Signalling receptor activator activity | 8.94 | 2.71 | 18 |
| GO-MF | Phosphatase binding | 4.50 | 1.20 | 12 |
| GO-MF | Heme binding | 3.00 | 7.09 | 10 |
| GO-MF | Serine hydrolase activity | 5.31 | 1.13 | 11 |
Figure 5GO enrichment analysis of the potential therapeutic targets of the JGL formula against acne vulgaris.
Figure 6KEGG pathway enrichment analysis. The bubble size represents the number of target genes in the pathway, and the colour represents the P value.
Potential targets of the JGL formula based on KEGG enrichment analysis.
| Pathway | Number of pathway targets |
|
|---|---|---|
| IL-17 signalling pathway | CASP3/CCL2/CXCL8/FOS/IFNG/IKBKB/IL1B/IL4/IL6/JUN/MAPK1/MAPK3/MAPK8/MMP1/MMP3/MMP9/NFKBIA/PTGS2/TNF | 3.81 |
| TNF signalling pathway | AKT1/CASP3/CCL2/FOS/ICAM1/IKBKB/IL1B/IL6/JUN/MAPK1/MAPK3/MAPK8/MMP3/MMP9/NFKBIA/PTGS2/SELE/TNF/VCAM1 | 1.27 |
| Th17 cell differentiation | AHR/FOS/IFNG/IKBKB/IL1B/IL2/IL4/IL6/JUN/MAPK1/MAPK3/MAPK8/NFKBIA/RXRA/STAT3/TGFB1 | 4.65 |
| T cell receptor signalling pathway | AKT1/CD40LG/FOS/IFNG/IKBKB/IL10/IL2/IL4/JUN/MAPK1/MAPK3/MAPK8/NFKBIA/TNF | 8.96 |
| PI3K-Akt signalling pathway | AKT1/BCL2/BCL2L1/CDKN1A/EGF/EGFR/ERBB2/ERBB3/IKBKB/IL2/IL4/IL6/MAPK1/MAPK3/MYC/NOS3/PIK3CG/PTEN/RXRA/SPP1/TP53/VEGFA | 4.77 |
| MAPK signalling pathway | AKT1/CASP3/EGF/EGFR/ERBB2/ERBB3/FOS/HSPB1/IKBKB/IL1A/IL1B/JUN/MAPK1/MAPK3/MAPK8/MYC/TGFB1/TNF/TP53/VEGFA | 8.37 |
| Toll-like receptor signalling pathway | AKT1/CXCL8/FOS/IKBKB/IL1B/IL6/JUN/MAPK1/MAPK3/MAPK8/NFKBIA/SPP1/TNF | 1.37 |
Figure 7“Compound-Target-Pathway” network. The pink circles represent the active compounds, the purple hexagonal nodes represent the potential therapeutic targets, and the blue V shaped nodes represent the pathways.