| Literature DB >> 35873600 |
Faidra Parsopoulou1, Gedeon Loules2, Maria Zamanakou2, Dorottya Csuka3, Agnes Szilagyi3, Maria Kompoti1, Grzegorz Porebski4, Fotis Psarros5, Markus Magerl6,7, Anna Valerieva8, Maria Staevska8, Krystyna Obtulowicz4, Marcus Maurer6,7, Matthaios Speletas1, Henriette Farkas3, Anastasios E Germenis1,2.
Abstract
Existing evidence indicates that modifier genes could change the phenotypic outcome of the causal SERPING1 variant and thus explain the expression variability of hereditary angioedema due to C1-inhibitor deficiency (C1-INH-HAE). To further examine this hypothesis, we investigated the presence or absence of 18 functional variants of genes encoding proteins involved in the metabolism and function of bradykinin, the main mediator of C1-INH-HAE attacks, in relation to three distinct phenotypic traits of patients with C1-INH-HAE, i.e., the age at disease onset, the need for long-term prophylaxis (LTP), and the severity of the disease. Genetic analyses were performed by a validated next-generation sequencing platform. In total, 233 patients with C1-INH-HAE from 144 unrelated families from five European countries were enrolled in the study. Already described correlations between five common functional variants [F12-rs1801020, KLKB1-rs3733402, CPN1-rs61751507, and two in SERPING1 (rs4926 and rs28362944)] and C1-INH-HAE severity were confirmed. Furthermore, significant correlations were found between either the age at disease onset, the LTP, or the severity score of the disease and a series of other functional variants (F13B-rs6003, PLAU-rs2227564, SERPINA1-rs28929474, SERPINA1-rs17580, KLK1-rs5515, SERPINE1-rs6092, and F2-rs1799963). Interestingly, correlations uncovered in the entire cohort of patients were different from those discovered in the cohort of patients carrying missense causal SERPING1 variants. Our findings indicate that variants other than the SERPING1 causal variants act as independent modifiers of C1-INH-HAE severity and could be tested as possible prognostic biomarkers.Entities:
Keywords: C1-inhibitor deficiency; functional variants; genetic biomarkers; hereditary angioedema; long-term prophylaxis; next-generation sequencing; severity score
Year: 2022 PMID: 35873600 PMCID: PMC9300820 DOI: 10.3389/falgy.2022.868185
Source DB: PubMed Journal: Front Allergy ISSN: 2673-6101
Demographic, clinical, and molecular data of the C1-INH-HAE patients.
|
|
|
|
|
|
|
|
|---|---|---|---|---|---|---|
| No (patients, families) | 233, 144 | 31, 30 | 47, 32 | 23, 23 | 113, 43 | 19, 16 |
| Sex (male/female) | 104/129 | 17/14 | 18/29 | 11/12 | 48/65 | 10/9 |
| Age at analysis | 40.0 (2.5–85) | 35.0 (2.5–67) | 44.0 (25–85) | 42.0 (13–81) | 39.0 (9–82) | 47.0 (8–81) |
| Age at onset | 12.5 (0.5–73) | 9.0 (1–31) | 17.0 (1–73) | 10.0 (3–19) | 12.0 (0.5–53) | 11.0 (1–50) |
| HAE Type (I/II) | 217/16 | 31/0 | 44/3 | 22/1 | 102/11 | 18/1 |
| Longterm treatment | 79/141/13 | 11/16/4 | 3/42/2 | 6/10/7 | 55/58/0 | 4/15/0 |
| CALS Severity | 26.74 (0–238) | 24.72 (4–69) | 43.95 (0–238) | Missing data | 10.74 (0–88) | 41.11 (6–103) |
| Regulatory, n (%) | 1 (0.43%) | 0 (0.00%) | 0 (0.00%) | 1 (4.35%) | 0 (0.00%) | 0 (0.00%) |
| Missense mutations, n (%) | 69 (29.61%) | 6 (19.36%) | 20 (42.55%) | 8 (34.78%) | 33 (29.20%) | 2 (10.53%) |
| Nonsense mutations, n (%) | 33 (14.16%) | 5 (16.13%) | 5 (10.64%) | 2 (8.70%) | 17 (15.04%) | 4 (21.05%) |
| Splice defects, n (%) | 22 (9.44%) | 4 (12.90%) | 1 (2.13%) | 3 (13.04%) | 12 (10.62%) | 2 (10.53%) |
| Small deletions or insertions (frameshift alterations), n (%) | 46 (19.74%) | 11 (35.48%) | 2 (4.26%) | 6 (26.08%) | 24 (21.24%) | 3 (15.78%) |
| Large deletions or insertions, n (%) | 28 (12.02%) | 1 (3.23%) | 7 (14.89%) | 2 (8.70%) | 16 (14.16%) | 2 (10.53%) |
| Deep intronic, n (%) | 2 (0.86%) | 2 (6.45%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) |
| Unidentified defects, n (%) | 32 (13.74%) | 2 (6.45%) | 12 (25.53%) | 1 (4.35%) | 11 (9.74%) | 6 (31.58%) |
Selected common functional variants.
|
|
|
|
|
|
|
|
|---|---|---|---|---|---|---|
|
| Factor XII | rs1801020 | c.-4T>C | NA (5'UTR) | 610,619 | ( |
|
| Factor XIII Subunit A | rs5985 | c.103G>T | p.Val35Leu | 134,570 | ( |
|
| Factor XIII Subunit B | rs6003 | c.344G>A | p.Arg115His | 134,580 | ( |
|
| Factor II | rs1799963 | c.*97G>A | NA (3'UTR) | 176,930 | ( |
|
| Carboxypeptidase N | rs61751507 | c.533G>A | p.Gly178Asp | 603,103 | ( |
|
| Alpha-2-Macroglobulin | rs669 | c.2998A>G | p.Ile1000Val | 103,950 | ( |
|
| Kallikrein 1 | rs5515 | c.230G>A | p.Arg77His | 147,910 | ( |
|
| Plasma Kallikrein B (Prekallikrein) | rs3733402 | c.428G>A | p.Ser143Asn | 229,000 | ( |
|
| Mannan-binding lectin serine protease 2 | rs72550870 | c.359A>G | p.Asp120Gly | 605,102 | ( |
|
| Myeloperoxidase | rs56378716 | c.752T>C | p.Met251Thr | 606,989 | ( |
|
| Urinary plasminogen activator (urokinase, plasminogen activator) | rs2227564 | c.422T>C | p.Leu141Pro | 191,840 | ( |
|
| Serine protease inhibitor, clade a, member 1 (a1-antitrypsin) | rs28929474 | c.1096G>A | p.Glu366Lys | 107,400 | ( |
| rs17580 | c.863A>T | p.Glu288Val | ( | |||
| rs121912714 | c.839A>T | p.Asp280Val | ( | |||
|
| Serine protease inhibitor, clade e, member 1 (Nexin, PAI-1) | rs6092 | c.43G>A | p.Ala15Thr | 173360 | ( |
|
| Toll-like receptor 2 | rs5743708 | c.2258G>A | p.Arg753Gln | 603028 | ( |
|
| Serine protease inhibitor, clade g, (C1-INH) | rs28362944 | c.-21T>C | NA (5'UTR) | 606860 | ( |
| rs4926 | c.1438G>A | p.Val480Met | ( |
Summary of the correlations of common functional variants with patients' phenotype – age at disease onset, need for LTP, CALS severity score.
|
|
|
|
|
|
| ||||
|---|---|---|---|---|---|---|---|---|---|
| All | c.1438G>A | GA | +3.6 years | – | – | ||||
| c.-21T>C | TC and CC | – | 2.5-fold | – | |||||
| c.-4T>C | CT | – | – | +18.69 | |||||
| c.344G>A | GA | – | – | −11.84 | |||||
| c.1096G>A | GA and AA | – | – | +80.16 | |||||
| c.422T>C | TT | – | – | −13.67 | |||||
| Missense | c.863A>T | AT | −8 years | – | – | ||||
| c.428G>A | AA | −7 years | – | +30.45 | |||||
| c.230G>A | GA | +8.95 years | – | −16.79 | |||||
| c.43G>A | AA | +8.4 years | – | – | |||||
| c.-21T>C | TC | – | 4.2-fold | – | |||||
| c.533G>A | GA | – | 98% probability decrease | – | |||||
| c.-4T>C | CT | +5 years CT | – | – | +13.88 | ||||
| c.*97G>A | GA | – | – | −25.97 | |||||