Literature DB >> 35862747

The Retraction of a Plasmid-Phage Chimera Genome Assembly Study Leaves Serious Issues Unaddressed-Essentially, Nolo Contendere.

Michael G Jobling1.   

Abstract

Entities:  

Keywords:  bacteriophages; gene sequencing; genomes; plasmids

Mesh：

Year:  2022        PMID： 35862747      PMCID： PMC9380549          DOI： 10.1128/aac.00220-22

Source DB:  PubMed          Journal:  Antimicrob Agents Chemother        ISSN： 0066-4804            Impact factor:   5.938


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  8 in total

1.  Escherichia coli prophage sequences are not present in a carbapenemase plasmid from Klebsiella. Reply to Authors' response to Letter to the Editor: If extraordinary data are not first corroborated, we risk being led astray: Occam's razor does not support the existence of plasmid-prophage chimeras. Comment on 'Effects of cryptic prophage regions in a plasmid carrying a carbapenemase gene on survival against antibiotic stress'.

Authors:  Michael G Jobling
Journal:  Int J Antimicrob Agents       Date:  2021-01-30       Impact factor: 5.283

2.  If extraordinary data are not first corroborated, we risk being led astray: Occam's razor does not support the existence of plasmid-prophage chimeras. Comment on 'Effects of cryptic prophage regions in a plasmid carrying a carbapenemase gene on survival against antibiotic stress'.

Authors:  Michael G Jobling
Journal:  Int J Antimicrob Agents       Date:  2018-12-27       Impact factor: 5.283

3.  Single origin of three plasmids bearing blaCTX-M-15 from different Klebsiella pneumoniae clones.

Authors:  Juyoun Shin; Kwan Soo Ko
Journal:  J Antimicrob Chemother       Date:  2013-11-19       Impact factor: 5.790

4.  A novel IS26 structure surrounds blaCTX-M genes in different plasmids from German clinical Escherichia coli isolates.

Authors:  A Cullik; Y Pfeifer; R Prager; H von Baum; W Witte
Journal:  J Med Microbiol       Date:  2010-01-21       Impact factor: 2.472

5.  Expression of Concern for Shin et al., "blaNDM-5-Bearing IncFII-Type Plasmids of Klebsiella pneumoniae Sequence Type 147 Transmitted by Cross-Border Transfer of a Patient".

Authors: 
Journal:  Antimicrob Agents Chemother       Date:  2022-01-18       Impact factor: 5.191

6.  Expression of Concern for Kim et al., "Complete Sequence of blaKPC-2-Harboring Plasmid with a Mosaic of IncN1- and IncN3-Type Plasmids in a Klebsiella pneumoniae Isolate from South Korea".

Authors: 
Journal:  Antimicrob Agents Chemother       Date:  2022-01-18       Impact factor: 5.191

7.  Trust but Verify: Uncorroborated Assemblies of Plasmid Genomes from Next-Generation Sequencing Data Are Likely Spurious Comment on "Diverse Plasmids Harboring blaCTX-M-15 in Klebsiella pneumoniae ST11 Isolates from Several Asian Countries," by So Yeon Kim and Kwan Soo Ko (Microb. Drug Resist. 2019; 25(2):227-232; DOI: 10.1089/mdr.2018.0020).

Authors:  Michael G Jobling
Journal:  Microb Drug Resist       Date:  2019-07-25       Impact factor: 2.706

8.  Retraction for Shin and Ko, "A Plasmid Bearing the blaCTX-M-15 Gene and Phage P1-Like Sequences from a Klebsiella pneumoniae Isolate".

Authors:  Juyoun Shin; Kwan Soo Ko
Journal:  Antimicrob Agents Chemother       Date:  2022-01-18       Impact factor: 5.938
  8 in total

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