| Literature DB >> 35860570 |
Li Gao1, Ying Li1, Cheng Yu1, Dong-Xu Liu1, Ke-Han Wu1, Zhi-Li Wei2, Ming-Yue Liu1, Lei Yu3.
Abstract
Human tongue squamous cell carcinoma (TSCC), the most prevalent type of oral cancer, is associated with human papillomavirus (HPV) infection. Our previous work showed Karyopherin α2 (KPNA2), as an oncogene of TSCC, by relegating the p53/autophagy signaling pathway. Nevertheless, the significance of KPNA2 in TSCC pathogenesis has not been established. KPNA2 levels were evaluated via the TCGA database, and its effects on survival outcomes were assessed by LASSO, Kaplan-Meier, and COX regression analyses. CIBERSORT and ESTIMATE investigated the relationships between KPNA2 and immune infiltration. At the same time, KPNA2 and HPV infection was analyzed by immunohistochemistry. In addition, the association between downstream molecular regulation pathways and KPNA2 levels was determined by GO, GSEA, and WGCNA. In TSCC, KPNA2 levels were associated with clinical prognosis and tumor grade. Moreover, KPNA2 may be involved in cancer cell differentiation and facilitates tumor-related genes and signaling pathways, such as Cell Cycle, Mitotic G1 phase, G1/S transition, DNA Repair, and Transcriptional Regulation TP53 signaling pathways. Nevertheless, regulatory B cells, follicular helper B cells, and immune and stromal scores between low- and high-KPNA2 expression groups were insignificant. These results imply that KPNA2 is highly involved in tumor grade and prognosis of TSCC. KPNA2 levels correct with HPV 16 markedly regulated cell differentiation, several oncogenes, and cancer-related pathways.Entities:
Keywords: HPV; KPNA2; biomarker; immune infiltration; tongue squamous cell carcinoma
Year: 2022 PMID: 35860570 PMCID: PMC9289550 DOI: 10.3389/fonc.2022.847793
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 5.738
Figure 1Association between KPNA2 expression and clinicopathological features of TSCC and diagnostic significance of KPNA2. (A) Cancer status. (B) Scatter plots show normalized log-rank statistical values for each respective cut-off of KPNA2 expression values. The vertical dashed line marks the best cut-off value with the most significant standard logarithmic rank statistic. (C) Kaplan-Meier plot for overall survival outcomes of TCGA-TSCC patients categorized based on KPNA2 expression. (D) Tumor invasion depth. (E) Tumor grade. (F) Stage. (G) Lymph node metastasis. (H) Gender. (I) Age.
Relationship between KPNA2 expression and clinical characteristics of TSCC patients.
| All cases | KPNA2 | |||
|---|---|---|---|---|
| Low expression | High expression |
| ||
|
| ||||
| Female | 44 | 16(36%) | 28(64%) | 0.2597 |
| Male | 80 | 20(25%) | 60(75%) | |
|
| ||||
| ≥57.8 | 74 | 22(30%) | 52(70%) | 0.9948 |
| <57.8 | 50 | 14(28%) | 36(72%) | |
|
| ||||
| 1 | 21 | 11(52%) | 10(48%) |
|
| 2 | 43 | 9(21%) | 34(79%) | |
| 3 | 33 | 6(18%) | 27(82%) | |
| 4 | 19 | 5(26%) | 14(74%) | |
|
| ||||
| 0 | 48 | 12(25%) | 36(75%) | 0.3065 |
| 1 | 17 | 7(41%) | 10(59%) | |
| 2 | 45 | 10(22%) | 35(78%) | |
|
| ||||
| I | 13 | 7(54%) | 6(46%) |
|
| II | 19 | 2(11%) | 17(89%) | |
| III | 29 | 8(28%) | 21(72%) | |
| IV | 51 | 12(24%) | 39(76%) | |
|
| ||||
| 1 | 17 | 9(53%) | 8(47%) |
|
| 2 | 85 | 23(27%) | 62(73%) | |
| 3 | 22 | 4(18%) | 18(82%) | |
pT, posttreatment tumor category; pN, lymph node status; Stage, AJCC prognostic stage grouping; Tumor grade, Tumor grade is a way of classifying tumors based on certain features of their cells.
Grade 1. The tumor cells look the most like normal tissue and are slow-growing (well-differentiated).
Grade 2. The tumor cells fall somewhere in between grade 1 and grade 3 (moderately-differentiated).
Grade 3. The tumor cells look very abnormal and are fast-growing (poorly-differentiated).
Bolded p-values were two-sided with significance defined as a p-value < 0.05.
Figure 2Relationship between KPNA2 levels and tumor immune landscape of TSCC. (A) Relationship between KPNA2 level and the proportion of 22 TIICs in TSCC tissues. (B–E) Box plots show different immune checkpoints between KPNA2 low- and high-expression cases. PD-1 (PDCD1), programmed cell death 1; CYT, cytotoxic activity; TILs, tumor-infiltrating lymphocytes; CTLA-4, cytotoxic T-lymphocyte associated protein 4. *P < 0.05, **P < 0.01 or ***P < 0.001, relative to High group.
Figure 3Identification of KPNA2 co-expression gene. (A) Volcano plot of DEGs associated with KPNA2 expression. Red denotes elevated DEGs, blue denotes suppressed DEGs, while gray denotes non-differential genes. (B) Heat map of DEGs. (C) Pearson test was used to assess the association between KPNA2 and DEGs. (D, E) The heat map shows genes positively and negatively correlated with KPNA2 (Top 50).
Figure 4Functional enrichment analysis of co-expression gene. (A) Bar plot of the significantly top 20 terms enriched. (B) Network relationship plot between terms and terms.
Figure 5PPI network constructed from co-expression gene. Genes with red dots were directly associated with KPNA2 and were considered hub genes.
Figure 6Kaplan–Meier survival analysis (A–H) and ROC curve (I–P) of eight hub genes of KPNA2.
Figure 7Validation of the relationship between KPNA2 expression and clinical information. KPNA2 was up-regulated in patients with HPV-positive TSCC patients.
Figure 8The correlation of KPNA2 and HPV16 in TSCC patients. (A) Immunohistochemistry, (B) statistical data between KPNA2 and HPV16.