Literature DB >> 35855362

Crystal structures of methyl 3,5-di-methyl-benzoate, 3,5-bis-(bromo-meth-yl)phenyl acetate and 5-hy-droxy-benzene-1,3-dicarbaldehyde.

Ben Ebersbach1, Wilhelm Seichter1, Monika Mazik1.   

Abstract

The crystal structures of the title compounds, methyl 3,5-di-methyl-benzoate (C10H12O2; 1), 3,5-bis-(bromo-meth-yl)phenyl acetate (C10H10Br2O2; 2) and 5-hy-droxy-benzene-1,3-dicarbaldehyde (C8H6O3; 3) were determined by single-crystal X-ray analysis. The crystals of 1 are composed of strands of C-H⋯O=C bonded mol-ecules, which are further arranged into layers. As a result of the presence of two bromo-methyl substituents in compound 2, mol-ecular dimers formed by crystallographically non-equivalent mol-ecules are connected to structurally different two-dimensional aggregates in which the bromine atoms participate in Br⋯Br bonds of type I and type II. In the case of compound 3, which possesses three donor/acceptor substituents, the mol-ecular association in the crystal creates a close three-dimensional network comprising Car-yl-H⋯Ohy-droxy, Cform-yl-H⋯Oform-yl and O-H⋯Oform-yl bonds. © Ebersbach et al. 2022.

Entities:  

Keywords:  1,3,5-tris­ubstituted benzene derivatives; C–H⋯π and π–π inter­actions; crystal structures; hydrogen bonding

Year:  2022        PMID: 35855362      PMCID: PMC9260362          DOI: 10.1107/S2056989022005643

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Studies on mol­ecular recognition of carbohydrates by artificial receptors revealed that macrocyclic compounds bearing two flexible side-arms represent effective and selective receptors for complexation of gluco­pyran­osides. The binding properties of these compounds depend on the nature of their building blocks, among others, the type of bridging units that connect two aromatic platforms (Lippe & Mazik, 2013 ▸, 2015 ▸; Amrhein et al., 2016 ▸, 2021 ▸; Amrhein & Mazik, 2021 ▸). The design of such receptor architectures was inspired by the results of our crystallographic studies on receptor–carbohydrate complexes (Mazik et al., 2005 ▸; for recent examples, see Köhler et al., 2020 ▸, 2021 ▸). For the syntheses of macrocycles consisting of benzene-based bridges, various 2- or 5-substituted benzene-1,3-di­carb­aldehydes have proven to be useful starting materials. Benzene derivatives with methyl or bromo­methyl groups in positions 1 and 3 are used to prepare the latter compounds. The crystal structures of three 1,3,5-substituted benzenes, serving as precursors for the syntheses of the macrocyclic compounds mentioned above, are described in this work.

Structural commentary

The title compounds 1 and 3 crystallize in the monoclinic system (space group P21/c, Z = 4), whereas compound 2 crystallizes in the triclinic space group P with two independent but conformationally similar mol­ecules (A and B) in the asymmetric unit of the cell. In compound 1 (Fig. 1 ▸), the plane through the methyl­oxycarbonyl unit is tilted at an angle of 8.70 (8) ° with respect to the benzene ring. In the independent mol­ecules of 2 (Fig. 2 ▸), the planes passing through the ester units are inclined at angles of 62.9 (1) and 81.3 (1)°, respectively, to the plane of their arene ring. The two bromine atoms of each mol­ecule are located on opposite sides of the benzene ring. In the crystal of the 5-hy­droxy­benzene-1,3-dicarbaldehyde (3) (Fig. 3 ▸), the mol­ecule deviates slightly from planarity, with the formyl groups rotated out of the benzene ring at angles of 4.43 (16) and 4.04 (16)°.
Figure 1

Perspective view of the mol­ecular structure of 1. Anisotropic displacement ellipsoids are drawn at the 50% probability level.

Figure 2

Perspective view of the mol­ecular structure of 2. Anisotropic displacement ellipsoids are drawn at the 50% probability level.

Figure 3

Perspective view of the mol­ecular structure of 3. Anisotropic displacement ellipsoids are drawn at the 50% probability level.

Supra­molecular features

In the crystal structure of 1, the mol­ecules are arranged into layers extending parallel to the crystallographic [101] plane (see Fig. 4 ▸). Within a given layer, the mol­ecules are linked in strands via C—H⋯O=C bonds [d(H⋯O) 2.57 Å; Table 1 ▸], with a methyl H atom acting as the donor. No directional inter­actions are present between the mol­ecular strands of a layer. With the participation of a H atom of the methyl ester unit, the linkage between the mol­ecules of adjacent layers occurs by C—H⋯π contacts (Nishio et al., 2009 ▸) with a H⋯Cg distance of 2.77 Å. Fig. 5 ▸ shows a packing excerpt of the crystal structure viewed in the direction of the layer normal.
Figure 4

Packing diagram of 1 viewed down the crystallographic b-axis.

Table 1

Hydrogen-bond geometry (Å, °) for 1

Cg1 represents the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H10B⋯O1i 0.982.573.5215 (19)163
C8—H8BCg1ii 0.982.763.445 (2)127

Symmetry codes: (i) ; (ii) .

Figure 5

Excerpt of the packing structure of 1 viewed in the direction of the layer normal. Dashed lines represent hydrogen-bonding inter­actions.

The excerpt of the crystal structure of 2 shown in Fig. 6 ▸ reveals two different inversion-symmetric dimers as the smallest supra­molecular entities, in which the mol­ecules are linked in an identical manner by C—H⋯O=C and C—H⋯Br bonds (Table 2 ▸) (Desiraju & Steiner, 1999 ▸). These dimers, however, form differently structured domains within the crystal. The dimers formed by mol­ecule A are connected via Br⋯Br bonds (Pedireddy et al., 1999 ▸) of type I [d(Br⋯Br) = 3.562 (1) Å; θ1 = 150.2°, θ2 = 158.5°] and of type II [d(Br⋯Br) = 3.859 (1) Å; θ1 = 135.0°, θ2 = 84.6°] as well as C—H⋯Br hydrogen bonds to form two-dimensional aggregates extending parallel to crystallographic [011] plane, in which the bromine atoms contribute to the formation of a cyclic four-membered synthon (Br4) and an eight-membered bonding motif (Fig. 7 ▸ a). The structure of the domains created by mol­ecule B is fundamentally different from those formed by mol­ecule A. In them, the dimers are linked in a strand-like fashion via type I Br⋯Br inter­actions [d(Br⋯Br) = 3.638 (1) Å; θ 1 = 152.3°, θ2 = 145.9°] (Fig. 7 ▸ b), which are part of an eight-membered ring motif. In the direction of the crystallographic a-axis, the connection of the dimers occurs through π–·π (face-to-face) inter­actions (Tiekink & Zukerman-Schpector, 2012 ▸) with a centroid–centroid distance of 3.653 (1) Å and an offset of 1.592 Å between the inter­acting arene rings.
Figure 6

(a) Structures of the dimers formed by mol­ecule A (left) and mol­ecule B (right) in the crystal structure of 2. (b) Packing structure of 2 viewed down the a-axis. Hydrogen bonds and Br⋯Br inter­actions are shown as dashed lines.

Table 2

Hydrogen-bond geometry (Å, °) for 2

D—H⋯A D—HH⋯A DA D—H⋯A
C10A—H10D⋯O2A i 0.972.283.236 (3)168
C10A—H10C⋯Br1A i 0.972.893.836 (3)164
C8A—H8A3⋯O20.962.583.521 (4)168
C10—H10B⋯Br2A i 0.973.013.757 (3)135
C10—H10A⋯O2ii 0.972.583.449 (3)150
C9—H9B⋯Br2iii 0.972.953.854 (3)156
C9—H9A⋯O2iii 0.972.453.334 (3)151

Symmetry codes: (i) ; (ii) ; (iii) .

Figure 7

Patterns of inter­molecular inter­actions created by (a) mol­ecule A and (b) mol­ecule B in the crystal structure of 2.

Viewing the crystal structure of compound 3 in the direction of the a-axis reveals a stacking arrangement of mol­ecules (Fig. 8 ▸). Along the stacking axis the centroid-centroid distance of 3.735 (1) Å between consecutive mol­ecules indicates the presence of offset π–π inter­actions. As is obvious from Fig. 9 ▸, showing the mode of non-covalent bonding in the crystal, the H atom of the hy­droxy group forms an inter­molecular O—H⋯O bond [O1—H1⋯O3 = 1.91 (2) Å, 150 (2)°; Table 3 ▸], while its O atom forms a C—H⋯O bond [C2—H2⋯O1 = 2.43 Å, 159.6°; Table 3 ▸], thus creating a supra­molecular synthon with the graph set (17) (Etter, 1990 ▸; Etter et al., 1990 ▸; Bernstein et al., 1995 ▸) in which four mol­ecules take part. The OH group is also involved in formation of an inversion-symmetric ring motif of the structure (8). Another supra­molecular motif corresponding to the (14) graph set is formed by the formyl groups of inversion-related mol­ecules.
Figure 8

Packing diagram of 3 viewed down the a-axis. Dashed lines represent hydrogen bonds.

Figure 9

Mode of inter­molecular non-covalent inter­actions in the crystal structure of 3. The cyclic supra­molecular synthons are marked by colour highlighting.

Table 3

Hydrogen-bond geometry (Å, °) for 3

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯O1i 0.952.433.3354 (16)160
C8—H8⋯O2ii 0.952.583.1973 (18)123
O1—H1⋯O3iii 0.85 (2)1.91 (2)2.6795 (13)150 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

Database survey

A search in the Cambridge Structural Database (CSD, Version 5.43, update November 2021; Groom et al., 2016 ▸) for benzene derivates containing the corresponding substituents resulted in several hits, but with relatively strong structural differences from the searched structures. The compound with the closest relation to 1 is ethyl 2,3,5,6-tetra­methyl­benzoate (FICVET; Pinkus et al. 2005 ▸), the crystal structure of which features C—H⋯O and C—H⋯π inter­actions. In the case of bromo­methyl-substituted benzenes, the crystal structures of 1,2,4,5-tetra­kis­(bromo­meth­yl)-3,6-di­meth­oxy­benzene, 1,2,4,5-tetra­kis­(bromo­meth­yl)-3,6-bis­(hex­yloxy)benzene and 1,2,4,5-tetra­­kis­(bromo­meth­yl)-3,6-bis­(2-ethyl­but­oxy)benzene (BAS­ZIG, BASZOM, BASZUS; Velde et al. 2012 ▸) as well as 1,3,5-tris­(bromo­meth­yl)-2,4,6-tri­meth­oxy­benzene (IDOBAG; Koch et al. 2013 ▸) are worth mentioning. The crystal structure of IDOBAG, for example, is characterized by the presence of C—H⋯O and C—H⋯Br hydrogen bonds as well as C—Br⋯Br halogen bonds of type II, as observed also in the crystal structure of 2. In the crystal structure of 2-hy­droxy­isophthalaldehyde (NEJJOB; Zondervan et al. 1997 ▸), an analogue of 3, the mol­ecules inter­act via O—H⋯O hydrogen bonds, forming chains. In addition, the hy­droxy group is involved in an intra­molecular O—H⋯O hydrogen bond with the neighbouring carbonyl oxygen atom.

Synthesis and crystallization

Compounds 1–3 were prepared according to literature procedures (Kurz & Göbel, 1996 ▸; Battaini et al., 2003 ▸; Star et al., 2003 ▸). Suitable crystals of compounds 2 and 3 for X-ray analysis were obtained by slow evaporation from a hexane solution, while crystals of 1 were grown from a subcooled melt.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 4 ▸. Hydrogen atom H1 in 3 was located in a difference-Fourier map and freely refined. Other H atoms were positioned geometrically and refined isotropically using a riding model with C—H = 0.93–0.98 Å and U iso(H) = 1.2–1.5U eq(C).
Table 4

Experimental details

  1 2 3
Crystal data
Chemical formulaC10H12O2 C10H10Br2O2 C8H6O3
M r 164.20322.00150.13
Crystal system, space groupMonoclinic, P21/n Triclinic, P Monoclinic, P21/n
Temperature (K)153130153
a, b, c (Å)8.4631 (6), 7.9793 (4), 13.4042 (9)7.7936 (2), 9.1655 (2), 17.2292 (4)3.7345 (1), 11.9549 (4), 15.0846 (5)
α, β, γ (°)90, 98.835 (6), 9088.1637 (12), 80.9050 (12), 65.8659 (11)90, 94.212 (2), 90
V3)894.44 (10)1108.30 (5)671.64 (4)
Z 444
Radiation typeMo KαMo KαMo Kα
μ (mm−1)0.087.290.12
Crystal size (mm)0.40 × 0.25 × 0.160.46 × 0.39 × 0.270.42 × 0.28 × 0.19
 
Data collection
DiffractometerStoe IPDS 2TBruker Kappa APEXII CCD area detectorBruker Kappa APEXII CCD area detector
Absorption correctionMulti-scan (SADABS; Bruker, 2014)
T min, T max 0.134, 0.244
No. of measured, independent and observed [I > 2σ(I)] reflections7437, 1762, 144929065, 5842, 530511533, 1819, 1519
R int 0.0460.0330.058
(sin θ/λ)max−1)0.6170.6800.691
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.041, 0.116, 1.050.028, 0.070, 1.040.047, 0.131, 1.06
No. of reflections176258421819
No. of parameters112255104
H-atom treatmentH-atom parameters constrainedH-atom parameters constrainedH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.24, −0.191.21, −0.980.33, −0.28

Computer programs: X-AREA and X-RED (Stoe & Cie, 2002 ▸), APEX2 and SAINT (Bruker, 2014 ▸), SIR2014 (Burla et al., 2015 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL (Sheldrick, 2015 ▸), ShelXle (Hübschle et al., 2011 ▸), XP (Sheldrick, 2008 ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) 1, 2, 3, global. DOI: 10.1107/S2056989022005643/ex2057sup1.cif Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989022005643/ex20571sup4.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989022005643/ex20571sup5.cml Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989022005643/ex20572sup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989022005643/ex20572sup6.cml Structure factors: contains datablock(s) 3. DOI: 10.1107/S2056989022005643/ex20573sup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989022005643/ex20573sup7.cml CCDC references: 2174617, 2174616, 2174615 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H12O2F(000) = 352
Mr = 164.20Dx = 1.219 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 8.4631 (6) ÅCell parameters from 7437 reflections
b = 7.9793 (4) Åθ = 2.7–27.2°
c = 13.4042 (9) ŵ = 0.08 mm1
β = 98.835 (6)°T = 153 K
V = 894.44 (10) Å3Piece, colorless
Z = 40.40 × 0.25 × 0.16 mm
Stoe IPDS 2T diffractometer1449 reflections with I > 2σ(I)
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focusRint = 0.046
Plane graphite monochromatorθmax = 26.0°, θmin = 2.7°
Detector resolution: 6.67 pixels mm-1h = −10→9
rotation method scansk = −9→9
7437 measured reflectionsl = −16→16
1762 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.116w = 1/[σ2(Fo2) + (0.0548P)2 + 0.2723P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1762 reflectionsΔρmax = 0.24 e Å3
112 parametersΔρmin = −0.19 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O10.27708 (14)0.33954 (14)0.48553 (8)0.0433 (3)
O20.20755 (12)0.58613 (12)0.54594 (7)0.0309 (3)
C10.12649 (14)0.34326 (16)0.62305 (9)0.0244 (3)
C20.10405 (16)0.16993 (17)0.62357 (10)0.0276 (3)
H20.14060.10270.57330.033*
C30.02860 (16)0.09507 (16)0.69720 (10)0.0283 (3)
C4−0.02303 (16)0.19629 (17)0.77063 (10)0.0279 (3)
H4−0.07470.14580.82110.033*
C5−0.00096 (15)0.36934 (17)0.77210 (10)0.0257 (3)
C60.07405 (15)0.44202 (17)0.69705 (10)0.0249 (3)
H60.08940.55990.69650.030*
C70.21123 (15)0.41859 (17)0.54403 (10)0.0271 (3)
C80.29088 (18)0.6711 (2)0.47431 (11)0.0361 (4)
H8A0.28080.79260.48220.054*
H8B0.24420.63870.40560.054*
H8C0.40420.63980.48660.054*
C90.00480 (19)−0.09303 (17)0.69749 (12)0.0383 (4)
H9A−0.0136−0.12910.76470.057*
H9B0.1005−0.14870.68050.057*
H9C−0.0879−0.12310.64750.057*
C10−0.05669 (18)0.47866 (18)0.85204 (11)0.0333 (3)
H10A0.03400.54280.88700.050*
H10B−0.10100.40800.90080.050*
H10C−0.13920.55600.82010.050*
U11U22U33U12U13U23
O10.0488 (7)0.0417 (6)0.0461 (7)0.0006 (5)0.0280 (5)−0.0072 (5)
O20.0345 (6)0.0299 (6)0.0308 (5)−0.0021 (4)0.0126 (4)0.0040 (4)
C10.0207 (6)0.0273 (7)0.0253 (7)0.0015 (5)0.0035 (5)−0.0001 (5)
C20.0262 (7)0.0260 (7)0.0300 (7)0.0039 (5)0.0025 (5)−0.0042 (5)
C30.0269 (7)0.0232 (7)0.0329 (7)0.0006 (5)−0.0012 (5)0.0017 (5)
C40.0283 (7)0.0284 (7)0.0265 (7)−0.0026 (5)0.0023 (5)0.0046 (5)
C50.0249 (7)0.0274 (7)0.0247 (6)0.0005 (5)0.0034 (5)−0.0001 (5)
C60.0245 (6)0.0221 (6)0.0280 (7)0.0004 (5)0.0040 (5)0.0004 (5)
C70.0223 (6)0.0316 (7)0.0276 (7)0.0001 (5)0.0045 (5)−0.0024 (5)
C80.0320 (8)0.0441 (9)0.0337 (8)−0.0061 (6)0.0098 (6)0.0092 (6)
C90.0418 (9)0.0237 (8)0.0480 (9)−0.0012 (6)0.0024 (7)0.0011 (6)
C100.0388 (8)0.0339 (8)0.0300 (7)−0.0009 (6)0.0140 (6)−0.0028 (6)
O1—C71.2073 (16)C5—C61.3956 (18)
O2—C71.3375 (17)C5—C101.5121 (18)
O2—C81.4448 (16)C6—H60.9500
C1—C61.3917 (18)C8—H8A0.9800
C1—C21.3961 (19)C8—H8B0.9800
C1—C71.4936 (17)C8—H8C0.9800
C2—C31.3900 (19)C9—H9A0.9800
C2—H20.9500C9—H9B0.9800
C3—C41.3944 (19)C9—H9C0.9800
C3—C91.5144 (19)C10—H10A0.9800
C4—C51.3931 (19)C10—H10B0.9800
C4—H40.9500C10—H10C0.9800
C7—O2—C8116.20 (11)O1—C7—C1124.76 (13)
C6—C1—C2119.92 (12)O2—C7—C1111.94 (11)
C6—C1—C7121.19 (12)O2—C8—H8A109.5
C2—C1—C7118.86 (12)O2—C8—H8B109.5
C3—C2—C1120.46 (12)H8A—C8—H8B109.5
C3—C2—H2119.8O2—C8—H8C109.5
C1—C2—H2119.8H8A—C8—H8C109.5
C2—C3—C4118.70 (12)H8B—C8—H8C109.5
C2—C3—C9120.23 (13)C3—C9—H9A109.5
C4—C3—C9121.07 (13)C3—C9—H9B109.5
C5—C4—C3121.89 (12)H9A—C9—H9B109.5
C5—C4—H4119.1C3—C9—H9C109.5
C3—C4—H4119.1H9A—C9—H9C109.5
C4—C5—C6118.46 (12)H9B—C9—H9C109.5
C4—C5—C10121.74 (12)C5—C10—H10A109.5
C6—C5—C10119.80 (12)C5—C10—H10B109.5
C1—C6—C5120.57 (12)H10A—C10—H10B109.5
C1—C6—H6119.7C5—C10—H10C109.5
C5—C6—H6119.7H10A—C10—H10C109.5
O1—C7—O2123.30 (12)H10B—C10—H10C109.5
C6—C1—C2—C30.43 (19)C7—C1—C6—C5−178.18 (12)
C7—C1—C2—C3178.69 (11)C4—C5—C6—C1−0.48 (19)
C1—C2—C3—C4−0.42 (19)C10—C5—C6—C1179.82 (12)
C1—C2—C3—C9−179.91 (13)C8—O2—C7—O1−1.2 (2)
C2—C3—C4—C50.0 (2)C8—O2—C7—C1178.09 (11)
C9—C3—C4—C5179.44 (13)C6—C1—C7—O1170.41 (14)
C3—C4—C5—C60.5 (2)C2—C1—C7—O1−7.8 (2)
C3—C4—C5—C10−179.82 (12)C6—C1—C7—O2−8.91 (17)
C2—C1—C6—C50.03 (19)C2—C1—C7—O2172.85 (12)
D—H···AD—HH···AD···AD—H···A
C10—H10B···O1i0.982.573.5215 (19)163
C8—H8B···Cg1ii0.982.763.445 (2)127
C10H10Br2O2Z = 4
Mr = 322.00F(000) = 624
Triclinic, P1Dx = 1.930 Mg m3
a = 7.7936 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.1655 (2) ÅCell parameters from 9654 reflections
c = 17.2292 (4) Åθ = 2.7–36.8°
α = 88.1637 (12)°µ = 7.29 mm1
β = 80.9050 (12)°T = 130 K
γ = 65.8659 (11)°Irregular, colourless
V = 1108.30 (5) Å30.46 × 0.39 × 0.27 mm
Bruker Kappa APEXII CCD area detector diffractometer5305 reflections with I > 2σ(I)
φ and ω scansRint = 0.033
Absorption correction: multi-scan (SADABS; Bruker, 2014)θmax = 28.9°, θmin = 1.2°
Tmin = 0.134, Tmax = 0.244h = −10→10
29065 measured reflectionsk = −12→12
5842 independent reflectionsl = −23→22
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.070w = 1/[σ2(Fo2) + (0.0273P)2 + 2.052P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
5842 reflectionsΔρmax = 1.21 e Å3
255 parametersΔρmin = −0.98 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Br1−0.08475 (4)0.81672 (3)0.00562 (2)0.02904 (7)
Br20.48472 (4)0.08778 (3)0.11939 (2)0.03302 (8)
O10.5485 (3)0.6991 (2)0.19580 (10)0.0223 (3)
O20.8281 (3)0.4838 (2)0.16971 (12)0.0300 (4)
C10.4550 (3)0.6259 (3)0.15806 (14)0.0180 (4)
C20.3764 (3)0.7009 (3)0.09361 (13)0.0177 (4)
H20.39060.79270.07560.021*
C30.2757 (3)0.6375 (3)0.05580 (13)0.0168 (4)
C40.2561 (3)0.5002 (3)0.08395 (14)0.0183 (4)
H40.18960.45700.05870.022*
C50.3346 (3)0.4268 (3)0.14936 (14)0.0189 (4)
C60.4351 (3)0.4903 (3)0.18721 (14)0.0190 (4)
H60.48790.44250.23120.023*
C70.7388 (4)0.6174 (3)0.19617 (14)0.0204 (4)
C80.8159 (4)0.7190 (3)0.23218 (15)0.0262 (5)
H8A0.92570.65180.25480.039*
H8B0.72030.78870.27250.039*
H8C0.85150.78170.19250.039*
C90.1944 (3)0.7141 (3)−0.01535 (14)0.0221 (5)
H9A0.23490.6337−0.05750.026*
H9B0.24320.7937−0.03260.026*
C100.3063 (4)0.2828 (3)0.18047 (17)0.0258 (5)
H10A0.17670.29720.17830.031*
H10B0.32490.27120.23510.031*
Br1A0.43346 (3)0.44424 (3)0.61006 (2)0.02337 (6)
Br2A0.92345 (4)−0.40729 (3)0.60976 (2)0.02744 (7)
O1A0.9262 (3)0.0059 (2)0.34359 (11)0.0285 (4)
O2A0.6523 (3)0.1522 (3)0.30204 (12)0.0443 (6)
C1A0.8337 (3)0.0113 (3)0.42092 (14)0.0200 (4)
C2A0.7921 (3)0.1409 (3)0.47025 (16)0.0219 (5)
H2A0.81180.22960.45090.026*
C3A0.7203 (3)0.1375 (3)0.54912 (15)0.0210 (5)
C4A0.6907 (3)0.0042 (3)0.57655 (14)0.0192 (4)
H4A0.64130.00220.62920.023*
C5A0.7340 (3)−0.1266 (3)0.52649 (13)0.0171 (4)
C6A0.8055 (3)−0.1220 (3)0.44763 (13)0.0178 (4)
H6A0.8340−0.20790.41330.021*
C7A0.8205 (4)0.0866 (3)0.28849 (14)0.0219 (5)
C8A0.9420 (4)0.0791 (4)0.21112 (16)0.0317 (6)
H8A10.90010.03690.17120.048*
H8A21.07220.01090.21450.048*
H8A30.93170.18460.19800.048*
C9A0.6879 (4)0.2709 (3)0.60537 (19)0.0323 (6)
H9A10.78290.31340.58930.039*
H9A20.70360.22910.65740.039*
C10A0.7074 (3)−0.2710 (3)0.55685 (15)0.0225 (5)
H10C0.6986−0.33150.51360.027*
H10D0.5896−0.23860.59380.027*
U11U22U33U12U13U23
Br10.02417 (13)0.02849 (13)0.03098 (14)−0.00553 (10)−0.01021 (10)0.00568 (10)
Br20.03039 (14)0.01534 (12)0.05357 (18)−0.00887 (10)−0.00889 (12)0.00249 (11)
O10.0273 (9)0.0173 (8)0.0254 (9)−0.0095 (7)−0.0116 (7)0.0010 (7)
O20.0238 (9)0.0277 (10)0.0385 (11)−0.0103 (8)−0.0035 (8)−0.0084 (8)
C10.0183 (10)0.0160 (10)0.0198 (11)−0.0063 (8)−0.0051 (8)−0.0011 (8)
C20.0205 (10)0.0141 (10)0.0182 (10)−0.0069 (8)−0.0028 (8)0.0009 (8)
C30.0170 (10)0.0163 (10)0.0139 (10)−0.0042 (8)−0.0005 (8)−0.0014 (8)
C40.0159 (10)0.0169 (10)0.0218 (11)−0.0068 (8)−0.0020 (8)−0.0019 (8)
C50.0152 (10)0.0162 (10)0.0228 (11)−0.0055 (8)0.0010 (8)0.0012 (8)
C60.0194 (10)0.0174 (10)0.0186 (10)−0.0056 (8)−0.0049 (8)0.0037 (8)
C70.0248 (11)0.0231 (11)0.0166 (10)−0.0126 (9)−0.0045 (9)0.0028 (9)
C80.0337 (13)0.0302 (13)0.0228 (12)−0.0199 (11)−0.0081 (10)0.0016 (10)
C90.0238 (11)0.0252 (12)0.0163 (11)−0.0088 (9)−0.0040 (9)0.0007 (9)
C100.0232 (12)0.0225 (12)0.0330 (13)−0.0118 (10)−0.0019 (10)0.0063 (10)
Br1A0.02379 (12)0.01843 (11)0.01960 (11)−0.00036 (9)−0.00319 (9)0.00021 (8)
Br2A0.02581 (13)0.02373 (13)0.03068 (14)−0.00786 (10)−0.00669 (10)0.00987 (10)
O1A0.0182 (8)0.0409 (11)0.0200 (9)−0.0068 (8)−0.0022 (7)0.0120 (8)
O2A0.0272 (10)0.0641 (15)0.0212 (10)0.0028 (10)−0.0076 (8)0.0062 (10)
C1A0.0124 (9)0.0250 (11)0.0187 (11)−0.0037 (8)−0.0039 (8)0.0067 (9)
C2A0.0141 (10)0.0168 (10)0.0339 (13)−0.0041 (8)−0.0091 (9)0.0083 (9)
C3A0.0131 (10)0.0183 (11)0.0285 (12)−0.0013 (8)−0.0081 (9)−0.0012 (9)
C4A0.0136 (10)0.0228 (11)0.0175 (10)−0.0032 (8)−0.0035 (8)−0.0003 (8)
C5A0.0116 (9)0.0193 (10)0.0195 (11)−0.0048 (8)−0.0047 (8)0.0027 (8)
C6A0.0144 (9)0.0192 (10)0.0180 (10)−0.0041 (8)−0.0051 (8)0.0000 (8)
C7A0.0280 (12)0.0197 (11)0.0194 (11)−0.0101 (10)−0.0076 (9)0.0039 (9)
C8A0.0399 (15)0.0364 (15)0.0227 (13)−0.0211 (13)−0.0022 (11)0.0086 (11)
C9A0.0200 (12)0.0241 (13)0.0471 (17)−0.0002 (10)−0.0115 (11)−0.0131 (12)
C10A0.0176 (10)0.0240 (12)0.0267 (12)−0.0091 (9)−0.0050 (9)0.0045 (9)
Br1—C91.962 (2)Br1A—C9A1.960 (3)
Br2—C101.965 (3)Br2A—C10A1.979 (2)
O1—C71.362 (3)O1A—C7A1.353 (3)
O1—C11.407 (3)O1A—C1A1.403 (3)
O2—C71.196 (3)O2A—C7A1.184 (3)
C1—C21.379 (3)C1A—C2A1.379 (4)
C1—C61.383 (3)C1A—C6A1.380 (3)
C2—C31.392 (3)C2A—C3A1.390 (4)
C2—H20.9300C2A—H2A0.9300
C3—C41.392 (3)C3A—C4A1.389 (3)
C3—C91.492 (3)C3A—C9A1.498 (4)
C4—C51.389 (3)C4A—C5A1.392 (3)
C4—H40.9300C4A—H4A0.9300
C5—C61.391 (3)C5A—C6A1.391 (3)
C5—C101.495 (3)C5A—C10A1.488 (3)
C6—H60.9300C6A—H6A0.9300
C7—C81.492 (3)C7A—C8A1.494 (4)
C8—H8A0.9600C8A—H8A10.9600
C8—H8B0.9600C8A—H8A20.9600
C8—H8C0.9600C8A—H8A30.9600
C9—H9A0.9700C9A—H9A10.9700
C9—H9B0.9700C9A—H9A20.9700
C10—H10A0.9700C10A—H10C0.9700
C10—H10B0.9700C10A—H10D0.9700
C7—O1—C1118.16 (18)C7A—O1A—C1A118.43 (19)
C2—C1—C6122.2 (2)C2A—C1A—C6A121.8 (2)
C2—C1—O1116.6 (2)C2A—C1A—O1A119.6 (2)
C6—C1—O1121.1 (2)C6A—C1A—O1A118.3 (2)
C1—C2—C3119.2 (2)C1A—C2A—C3A119.3 (2)
C1—C2—H2120.4C1A—C2A—H2A120.3
C3—C2—H2120.4C3A—C2A—H2A120.3
C4—C3—C2119.3 (2)C4A—C3A—C2A119.4 (2)
C4—C3—C9120.7 (2)C4A—C3A—C9A120.0 (2)
C2—C3—C9120.0 (2)C2A—C3A—C9A120.5 (2)
C5—C4—C3120.8 (2)C3A—C4A—C5A121.0 (2)
C5—C4—H4119.6C3A—C4A—H4A119.5
C3—C4—H4119.6C5A—C4A—H4A119.5
C4—C5—C6119.9 (2)C6A—C5A—C4A119.2 (2)
C4—C5—C10120.1 (2)C6A—C5A—C10A120.1 (2)
C6—C5—C10120.0 (2)C4A—C5A—C10A120.7 (2)
C1—C6—C5118.6 (2)C1A—C6A—C5A119.3 (2)
C1—C6—H6120.7C1A—C6A—H6A120.3
C5—C6—H6120.7C5A—C6A—H6A120.3
O2—C7—O1123.3 (2)O2A—C7A—O1A122.4 (2)
O2—C7—C8126.2 (2)O2A—C7A—C8A126.0 (2)
O1—C7—C8110.5 (2)O1A—C7A—C8A111.6 (2)
C7—C8—H8A109.5C7A—C8A—H8A1109.5
C7—C8—H8B109.5C7A—C8A—H8A2109.5
H8A—C8—H8B109.5H8A1—C8A—H8A2109.5
C7—C8—H8C109.5C7A—C8A—H8A3109.5
H8A—C8—H8C109.5H8A1—C8A—H8A3109.5
H8B—C8—H8C109.5H8A2—C8A—H8A3109.5
C3—C9—Br1111.76 (16)C3A—C9A—Br1A112.24 (17)
C3—C9—H9A109.3C3A—C9A—H9A1109.2
Br1—C9—H9A109.3Br1A—C9A—H9A1109.2
C3—C9—H9B109.3C3A—C9A—H9A2109.2
Br1—C9—H9B109.3Br1A—C9A—H9A2109.2
H9A—C9—H9B107.9H9A1—C9A—H9A2107.9
C5—C10—Br2111.29 (17)C5A—C10A—Br2A110.38 (16)
C5—C10—H10A109.4C5A—C10A—H10C109.6
Br2—C10—H10A109.4Br2A—C10A—H10C109.6
C5—C10—H10B109.4C5A—C10A—H10D109.6
Br2—C10—H10B109.4Br2A—C10A—H10D109.6
H10A—C10—H10B108.0H10C—C10A—H10D108.1
C7—O1—C1—C2−116.6 (2)C7A—O1A—C1A—C2A−81.9 (3)
C7—O1—C1—C666.7 (3)C7A—O1A—C1A—C6A104.9 (3)
C6—C1—C2—C3−0.8 (4)C6A—C1A—C2A—C3A0.2 (3)
O1—C1—C2—C3−177.5 (2)O1A—C1A—C2A—C3A−172.7 (2)
C1—C2—C3—C40.2 (3)C1A—C2A—C3A—C4A−0.4 (3)
C1—C2—C3—C9−178.3 (2)C1A—C2A—C3A—C9A175.3 (2)
C2—C3—C4—C50.4 (3)C2A—C3A—C4A—C5A0.8 (3)
C9—C3—C4—C5178.8 (2)C9A—C3A—C4A—C5A−175.0 (2)
C3—C4—C5—C6−0.3 (3)C3A—C4A—C5A—C6A−0.9 (3)
C3—C4—C5—C10177.8 (2)C3A—C4A—C5A—C10A178.1 (2)
C2—C1—C6—C50.9 (4)C2A—C1A—C6A—C5A−0.3 (3)
O1—C1—C6—C5177.4 (2)O1A—C1A—C6A—C5A172.73 (19)
C4—C5—C6—C1−0.3 (3)C4A—C5A—C6A—C1A0.6 (3)
C10—C5—C6—C1−178.5 (2)C10A—C5A—C6A—C1A−178.4 (2)
C1—O1—C7—O2−4.0 (3)C1A—O1A—C7A—O2A−5.1 (4)
C1—O1—C7—C8174.9 (2)C1A—O1A—C7A—C8A175.6 (2)
C4—C3—C9—Br170.6 (2)C4A—C3A—C9A—Br1A−95.8 (3)
C2—C3—C9—Br1−111.0 (2)C2A—C3A—C9A—Br1A88.5 (3)
C4—C5—C10—Br280.7 (2)C6A—C5A—C10A—Br2A99.1 (2)
C6—C5—C10—Br2−101.1 (2)C4A—C5A—C10A—Br2A−79.9 (2)
D—H···AD—HH···AD···AD—H···A
C10A—H10D···O2Ai0.972.283.236 (3)168
C10A—H10C···Br1Ai0.972.893.836 (3)164
C8A—H8A3···O20.962.583.521 (4)168
C10—H10B···Br2Ai0.973.013.757 (3)135
C10—H10A···O2ii0.972.583.449 (3)150
C9—H9B···Br2iii0.972.953.854 (3)156
C9—H9A···O2iii0.972.453.334 (3)151
C8H6O3F(000) = 312
Mr = 150.13Dx = 1.485 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 3.7345 (1) ÅCell parameters from 6158 reflections
b = 11.9549 (4) Åθ = 2.7–30.5°
c = 15.0846 (5) ŵ = 0.12 mm1
β = 94.212 (2)°T = 153 K
V = 671.64 (4) Å3Rod, colourless
Z = 40.42 × 0.28 × 0.19 mm
Bruker Kappa APEXII CCD area detector diffractometerRint = 0.058
φ and ω scansθmax = 29.4°, θmin = 2.7°
11533 measured reflectionsh = −5→4
1819 independent reflectionsk = −16→16
1519 reflections with I > 2σ(I)l = −20→20
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.131w = 1/[σ2(Fo2) + (0.0692P)2 + 0.2868P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1819 reflectionsΔρmax = 0.33 e Å3
104 parametersΔρmin = −0.28 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O10.6355 (3)0.48950 (8)0.38804 (7)0.0332 (3)
O21.0631 (3)0.10838 (8)0.62211 (7)0.0336 (3)
O30.2117 (3)0.11521 (8)0.23777 (6)0.0291 (3)
C10.6468 (4)0.37799 (10)0.40378 (8)0.0214 (3)
C20.8207 (3)0.34507 (10)0.48515 (8)0.0207 (3)
H20.91890.40000.52540.025*
C30.8496 (3)0.23282 (10)0.50697 (7)0.0197 (3)
C40.7080 (4)0.15111 (10)0.44830 (8)0.0214 (3)
H40.72940.07400.46310.026*
C50.5354 (3)0.18440 (10)0.36798 (8)0.0206 (3)
C60.5036 (3)0.29757 (10)0.34512 (8)0.0204 (3)
H60.38500.31910.28990.024*
C71.0363 (4)0.20285 (11)0.59351 (8)0.0235 (3)
H71.14190.26150.62900.028*
C80.3862 (4)0.09684 (11)0.30752 (9)0.0253 (3)
H80.42890.02100.32400.030*
H10.519 (7)0.5065 (19)0.3394 (16)0.056 (7)*
U11U22U33U12U13U23
O10.0477 (7)0.0190 (5)0.0297 (5)−0.0017 (4)−0.0184 (5)0.0031 (4)
O20.0445 (7)0.0281 (5)0.0269 (5)0.0034 (4)−0.0066 (4)0.0052 (4)
O30.0329 (6)0.0298 (5)0.0233 (5)−0.0024 (4)−0.0071 (4)−0.0047 (4)
C10.0228 (7)0.0204 (6)0.0203 (5)−0.0004 (4)−0.0036 (4)0.0005 (4)
C20.0214 (7)0.0217 (6)0.0183 (5)−0.0005 (4)−0.0034 (4)−0.0010 (4)
C30.0184 (6)0.0228 (6)0.0175 (5)0.0005 (4)−0.0012 (4)0.0005 (4)
C40.0227 (7)0.0206 (5)0.0204 (5)0.0000 (4)−0.0011 (4)0.0002 (4)
C50.0193 (6)0.0234 (6)0.0187 (5)−0.0008 (4)−0.0011 (4)−0.0025 (4)
C60.0194 (6)0.0236 (6)0.0175 (5)−0.0006 (4)−0.0023 (4)−0.0003 (4)
C70.0248 (7)0.0257 (6)0.0195 (5)0.0022 (5)−0.0027 (4)0.0006 (4)
C80.0267 (7)0.0248 (6)0.0236 (6)−0.0025 (5)−0.0026 (5)−0.0026 (5)
O1—C11.3541 (15)C3—C71.4781 (16)
O1—H10.85 (2)C4—C51.3882 (16)
O2—C71.2105 (16)C4—H40.9500
O3—C81.2163 (16)C5—C61.3991 (17)
C1—C61.3870 (16)C5—C81.4709 (17)
C1—C21.4022 (16)C6—H60.9500
C2—C31.3840 (17)C7—H70.9500
C2—H20.9500C8—H80.9500
C3—C41.3958 (16)
C1—O1—H1113.2 (16)C4—C5—C6121.19 (11)
O1—C1—C6124.40 (11)C4—C5—C8117.88 (11)
O1—C1—C2115.87 (11)C6—C5—C8120.92 (11)
C6—C1—C2119.73 (11)C1—C6—C5119.43 (11)
C3—C2—C1120.23 (11)C1—C6—H6120.3
C3—C2—H2119.9C5—C6—H6120.3
C1—C2—H2119.9O2—C7—C3124.21 (12)
C2—C3—C4120.56 (11)O2—C7—H7117.9
C2—C3—C7117.95 (11)C3—C7—H7117.9
C4—C3—C7121.49 (11)O3—C8—C5124.23 (12)
C5—C4—C3118.86 (11)O3—C8—H8117.9
C5—C4—H4120.6C5—C8—H8117.9
C3—C4—H4120.6
O1—C1—C2—C3−179.31 (12)O1—C1—C6—C5179.13 (13)
C6—C1—C2—C30.0 (2)C2—C1—C6—C5−0.1 (2)
C1—C2—C3—C40.3 (2)C4—C5—C6—C1−0.1 (2)
C1—C2—C3—C7179.88 (12)C8—C5—C6—C1179.87 (12)
C2—C3—C4—C5−0.5 (2)C2—C3—C7—O2176.10 (14)
C7—C3—C4—C5179.96 (12)C4—C3—C7—O2−4.3 (2)
C3—C4—C5—C60.3 (2)C4—C5—C8—O3175.61 (14)
C3—C4—C5—C8−179.58 (12)C6—C5—C8—O3−4.3 (2)
D—H···AD—HH···AD···AD—H···A
C2—H2···O1i0.952.433.3354 (16)160
C8—H8···O2ii0.952.583.1973 (18)123
O1—H1···O3iii0.85 (2)1.91 (2)2.6795 (13)150 (2)
  13 in total

1.  Molecular recognition of carbohydrates with artificial receptors: mimicking the binding motifs found in the crystal structures of protein-carbohydrate complexes.

Authors:  Monika Mazik; Hüseyin Cavga; Peter G Jones
Journal:  J Am Chem Soc       Date:  2005-06-29       Impact factor: 15.419

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Carbohydrate receptors combining both a macrocyclic building block and flexible side arms as recognition units: binding properties of compounds with CH2OH groups as side arms.

Authors:  Felix Amrhein; Jan Lippe; Monika Mazik
Journal:  Org Biomol Chem       Date:  2016-10-26       Impact factor: 3.876

4.  A double arene hydroxylation mediated by dicopper(II)-hydroperoxide species.

Authors:  Giuseppe Battaini; Enrico Monzani; Angelo Perotti; Cristina Para; Luigi Casella; Laura Santagostini; Michele Gullotti; Renée Dillinger; Christian Näther; Felix Tuczek
Journal:  J Am Chem Soc       Date:  2003-04-09       Impact factor: 15.419

5.  Artificial receptors inspired by crystal structures of complexes formed between acyclic receptors and monosaccharides: design, syntheses, and binding properties.

Authors:  Jan Lippe; Monika Mazik
Journal:  J Org Chem       Date:  2013-09-03       Impact factor: 4.354

6.  Carbohydrate receptors combining both a macrocyclic building block and flexible side arms as recognition units: design, syntheses, and binding studies.

Authors:  Jan Lippe; Monika Mazik
Journal:  J Org Chem       Date:  2015-01-21       Impact factor: 4.354

7.  ShelXle: a Qt graphical user interface for SHELXL.

Authors:  Christian B Hübschle; George M Sheldrick; Birger Dittrich
Journal:  J Appl Crystallogr       Date:  2011-11-12       Impact factor: 3.304

8.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

9.  Binding modes of methyl α-d-glucopyranoside to an artificial receptor in crystalline complexes.

Authors:  Linda Köhler; Conrad Hübler; Wilhelm Seichter; Monika Mazik
Journal:  RSC Adv       Date:  2021-06-24       Impact factor: 4.036

10.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
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