Literature DB >> 35851932

Prospective role and immunotherapeutic targets of sideroflexin protein family in lung adenocarcinoma: evidence from bioinformatics validation.

Huy Hoang Dang1, Hoang Dang Khoa Ta2,3, Truc T T Nguyen4,5, Gangga Anuraga2,3,6, Chih-Yang Wang2,3, Kuen-Haur Lee2,3,7, Nguyen Quoc Khanh Le8,9,10.   

Abstract

As lung cancer remains the leading cause of cancer deaths globally, characterizing the tumor molecular profiles is crucial to tailoring treatments for individuals at advanced stages. Cancer cells exhibit strong dependence on iron for their proliferation, and several iron-regulatory proteins have been proposed as either oncogenes or tumor suppressive genes. This study aims to evaluate the prospective therapeutic and prognostic values of the sideroflexin (SFXN) gene family, whose functions involve mitochondrial iron metabolism, in lung adenocarcinoma (LUAD). Differential expression analysis using TIMER and UALCAN tools was first employed to compare SFXNs expression levels between normal and LUAD tissues. Next, SFXNs' prognostic values, biological significance, and potential as immunotherapy candidates were examined from GEPIA, cBioPortal, MetaCore, Cytoscape, and TIMER databases. It was found that all members of SFXN family, except SFXN3, were differentially expressed in LUAD compared to normal samples and within different stages of LUAD. Survival analysis then revealed SFXN1 to be related to worse overall survival outcome in patients with LUAD. Furthermore, several correlations between expression of SFXN1 and immune infiltration cells were discovered. To conclude, our study provides evidence of SFXN family gene's relevance to the prognosis and immunotherapeutic targets of LUAD.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Bioinformatics analysis; Immune therapeutics; Lung adenocarcinoma; SFXN; SLC56A; Sideroflexin

Mesh:

Substances:

Year:  2022        PMID: 35851932     DOI: 10.1007/s10142-022-00883-3

Source DB:  PubMed          Journal:  Funct Integr Genomics        ISSN: 1438-793X            Impact factor:   3.674


  34 in total

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Journal:  Proteomics       Date:  2012-07       Impact factor: 3.984

Review 4.  Mitochondrial complex III: an essential component of universal oxygen sensing machinery?

Authors:  Navdeep S Chandel
Journal:  Respir Physiol Neurobiol       Date:  2010-08-11       Impact factor: 1.931

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6.  Forward genetic analysis using OCT screening identifies Sfxn3 mutations leading to progressive outer retinal degeneration in mice.

Authors:  Bo Chen; Bogale Aredo; Yi Ding; Xin Zhong; Yuanfei Zhu; Cynthia X Zhao; Ashwani Kumar; Chao Xing; Laurent Gautron; Stephen Lyon; Jamie Russell; Xiaohong Li; Miao Tang; Priscilla Anderton; Sara Ludwig; Eva Marie Y Moresco; Bruce Beutler; Rafael L Ufret-Vincenty
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-26       Impact factor: 11.205

7.  The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.

Authors:  Jordi Barretina; Giordano Caponigro; Nicolas Stransky; Kavitha Venkatesan; Adam A Margolin; Sungjoon Kim; Christopher J Wilson; Joseph Lehár; Gregory V Kryukov; Dmitriy Sonkin; Anupama Reddy; Manway Liu; Lauren Murray; Michael F Berger; John E Monahan; Paula Morais; Jodi Meltzer; Adam Korejwa; Judit Jané-Valbuena; Felipa A Mapa; Joseph Thibault; Eva Bric-Furlong; Pichai Raman; Aaron Shipway; Ingo H Engels; Jill Cheng; Guoying K Yu; Jianjun Yu; Peter Aspesi; Melanie de Silva; Kalpana Jagtap; Michael D Jones; Li Wang; Charles Hatton; Emanuele Palescandolo; Supriya Gupta; Scott Mahan; Carrie Sougnez; Robert C Onofrio; Ted Liefeld; Laura MacConaill; Wendy Winckler; Michael Reich; Nanxin Li; Jill P Mesirov; Stacey B Gabriel; Gad Getz; Kristin Ardlie; Vivien Chan; Vic E Myer; Barbara L Weber; Jeff Porter; Markus Warmuth; Peter Finan; Jennifer L Harris; Matthew Meyerson; Todd R Golub; Michael P Morrissey; William R Sellers; Robert Schlegel; Levi A Garraway
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

8.  Sideroflexin 3 is an α-synuclein-dependent mitochondrial protein that regulates synaptic morphology.

Authors:  Inês S Amorim; Laura C Graham; Roderick N Carter; Nicholas M Morton; Fella Hammachi; Tilo Kunath; Giuseppa Pennetta; Sarah M Carpanini; Jean C Manson; Douglas J Lamont; Thomas M Wishart; Thomas H Gillingwater
Journal:  J Cell Sci       Date:  2017-01-03       Impact factor: 5.285

9.  The mitochondrial carrier SFXN1 is critical for complex III integrity and cellular metabolism.

Authors:  Michelle Grace Acoba; Ebru S Selen Alpergin; Santosh Renuse; Lucía Fernández-Del-Río; Ya-Wen Lu; Oleh Khalimonchuk; Catherine F Clarke; Akhilesh Pandey; Michael J Wolfgang; Steven M Claypool
Journal:  Cell Rep       Date:  2021-03-16       Impact factor: 9.423

10.  Identification of prognostic markers by weighted gene co-expression network analysis in non-small cell lung cancer.

Authors:  Binglin Chen; Xiaowei Xie; Feifeng Lan; Wenqi Liu
Journal:  Bioengineered       Date:  2021-12       Impact factor: 3.269

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