Literature DB >> 35847993

Distance-Based Analysis with Quantile Regression Models.

Shaoyu Li1, Yanqing Sun1, Liyang Diao2, Xue Wang3.   

Abstract

Non-standard structured, multivariate data are emerging in many research areas, including genetics and genomics, ecology, and social science. Suitably defined pairwise distance measures are commonly used in distance-based analysis to study the association between the variables. In this work, we consider a linear quantile regression model for pairwise distances. We investigate the large sample properties of an estimator of the unknown coefficients and propose statistical inference procedures correspondingly. Extensive simulations provide evidence of satisfactory finite sample properties of the proposed method. Finally, we applied the method to a microbiome association study to illustrate its utility.

Entities:  

Keywords:  Asymptotic property; Ecology; Microbiome association study; Pairwise distance; Quantile regression

Year:  2021        PMID: 35847993      PMCID: PMC9285981          DOI: 10.1007/s12561-021-09306-6

Source DB:  PubMed          Journal:  Stat Biosci        ISSN: 1867-1764


  14 in total

1.  Generalized genomic distance-based regression methodology for multilocus association analysis.

Authors:  Jennifer Wessel; Nicholas J Schork
Journal:  Am J Hum Genet       Date:  2006-09-21       Impact factor: 11.025

2.  Rare-variant association testing for sequencing data with the sequence kernel association test.

Authors:  Michael C Wu; Seunggeun Lee; Tianxi Cai; Yun Li; Michael Boehnke; Xihong Lin
Journal:  Am J Hum Genet       Date:  2011-07-07       Impact factor: 11.025

3.  Extending multivariate distance matrix regression with an effect size measure and the asymptotic null distribution of the test statistic.

Authors:  Daniel B McArtor; Gitta H Lubke; C S Bergeman
Journal:  Psychometrika       Date:  2016-10-13       Impact factor: 2.500

Review 4.  Inflammatory bowel disease as a model for translating the microbiome.

Authors:  Curtis Huttenhower; Aleksandar D Kostic; Ramnik J Xavier
Journal:  Immunity       Date:  2014-06-19       Impact factor: 31.745

5.  The detection of disease clustering and a generalized regression approach.

Authors:  N Mantel
Journal:  Cancer Res       Date:  1967-02       Impact factor: 12.701

6.  Burden of Clostridium difficile infection in the United States.

Authors:  Fernanda C Lessa; Yi Mu; Wendy M Bamberg; Zintars G Beldavs; Ghinwa K Dumyati; John R Dunn; Monica M Farley; Stacy M Holzbauer; James I Meek; Erin C Phipps; Lucy E Wilson; Lisa G Winston; Jessica A Cohen; Brandi M Limbago; Scott K Fridkin; Dale N Gerding; L Clifford McDonald
Journal:  N Engl J Med       Date:  2015-02-26       Impact factor: 91.245

7.  Associating microbiome composition with environmental covariates using generalized UniFrac distances.

Authors:  Jun Chen; Kyle Bittinger; Emily S Charlson; Christian Hoffmann; James Lewis; Gary D Wu; Ronald G Collman; Frederic D Bushman; Hongzhe Li
Journal:  Bioinformatics       Date:  2012-06-17       Impact factor: 6.937

Review 8.  Clostridium difficile infection in the twenty-first century.

Authors:  Chandrabali Ghose
Journal:  Emerg Microbes Infect       Date:  2013-09-18       Impact factor: 7.163

Review 9.  Cancer Immune Checkpoint Inhibitor Therapy and the Gut Microbiota.

Authors:  Arthur E Frankel; Sachin Deshmukh; Amit Reddy; John Lightcap; Maureen Hayes; Steven McClellan; Seema Singh; Brooks Rabideau; T Grant Glover; Bruce Roberts; Andrew Y Koh
Journal:  Integr Cancer Ther       Date:  2019 Jan-Dec       Impact factor: 3.279

Review 10.  Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.

Authors:  Ramnik J Xavier; Curtis Huttenhower; Jason Lloyd-Price; Cesar Arze; Ashwin N Ananthakrishnan; Melanie Schirmer; Julian Avila-Pacheco; Tiffany W Poon; Elizabeth Andrews; Nadim J Ajami; Kevin S Bonham; Colin J Brislawn; David Casero; Holly Courtney; Antonio Gonzalez; Thomas G Graeber; A Brantley Hall; Kathleen Lake; Carol J Landers; Himel Mallick; Damian R Plichta; Mahadev Prasad; Gholamali Rahnavard; Jenny Sauk; Dmitry Shungin; Yoshiki Vázquez-Baeza; Richard A White; Jonathan Braun; Lee A Denson; Janet K Jansson; Rob Knight; Subra Kugathasan; Dermot P B McGovern; Joseph F Petrosino; Thaddeus S Stappenbeck; Harland S Winter; Clary B Clish; Eric A Franzosa; Hera Vlamakis
Journal:  Nature       Date:  2019-05-29       Impact factor: 49.962

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