| Literature DB >> 35847724 |
Linet Njue1, Naomi Porret1, Michaela Fux2, Ulrike Bacher1, Yara Banz3, Alicia Rovó1.
Abstract
Entities:
Year: 2020 PMID: 35847724 PMCID: PMC9175919 DOI: 10.1002/jha2.22
Source DB: PubMed Journal: EJHaem ISSN: 2688-6146
FIGURE 1Bone marrow biopsy of the patient. Trephine Biopsy, hematoxylin and eosin (H&E) stain, overview (A) showing a hypercellular bone marrow dominated by multifocal paratrabecular mast cell aggregates (10% of cellularity) and trilinear maturation of haemopoiesis with predominance of the myelod lineage. Detailed image of atypical paratrabecular mast cell aggregates (B). c‐kit immunohistochemistry (C) marks multiple, paratrabecular atypical mast cell aggregates. Increased numbers of macrophages are observed in a CD68 immunohistochemistry (D), showing a slight increase in monocytic cells
Mutations in the different cell compartments
| Mutation | Method | BM | Full blood | Monocytes | Saliva |
|---|---|---|---|---|---|
| Date collected | 21 July 2018 | 22 January 2019 | 22 January 2019 | 22 January 2019 | |
| VAF | VAF | VAF | VAF | ||
|
| PCR | 90% | 43% | 47% | – |
| NGS | 46% | – | – | – | |
| ddPCR | – | 43% | 47% | – | |
|
| NGS | 37% | 47% | 53% | – |
|
| NGS | 50% | 48% | 52% | – |
|
| NGS | 100% | 90% | 100% | – |
| Sanger sequencing | – | – | – | 50% |
For NGS, we used the Ion Torrent S5 platform (Thermo Fisher Scientific, Reinach, Switzerland) including IonChef, and the human genome assembly GRCh37 (hg19) for variant calling. The original bone marrow sample was sequenced using the Ampliseq Oncomine myeloid panel (40 genes/hotspots; Thermo Fisher Scientific, Reinach, Switzerland). VAF, variant allele frequency. All molecular investigations were done before the patient received the hypomethylating treatment and also before he underwent an allogeneic hematopoietic stem cell transplantation.