| Literature DB >> 35846493 |
Dita Maria Virginia1,2, Iwan Dwiprahasto1, Mae Sri Hartati Wahyuningsih1, Dwi Aris Agung Nugrahaningsih1.
Abstract
The prevalence of type 2 diabetes mellitus (T2DM) is increasing among Asians. The adenosine monophosphate-activated protein kinase (AMPK) increases T2DM risk through insulin resistance. Glucose levels are related to AMPK subunit α2 encoded by PRKAA2. This systematic review and meta-analysis aimed to analyse the association between PRKAA2 variation and T2DM risk. Publication search related to PRKAA2 and T2DM used PubMed, ProQuest, and ScienceDirect databases. Article selection based on inclusion and exclusion criteria only included Japanese and Chinese populations. This meta-analysis used five genotype models to estimate the effect of PRKAA2 variation and T2DM risk. Additionally, a fixed-effect model was selected to measure the pooled size effect if P > 0.05 or I2 < 50%. Qualitative analysis included four eligible studies, and meta-analysis included only two studies because both showed data concerning rs2746342 variation. Patients with G allele are 1.45 times more likely to have T2DM than patients with T allele (95% confidence interval [CI]: 1.20, 1.76; P: 0.0001). Notably, patients who had GG genotype have 1.96 times higher risk of T2DM compared with those with TT genotype (95% CI: 1.34, 2.87; P: 0.0005), dominant model (odds ratio [OR]: 1.75; 95% CI: 1.32, 2.31; P: 0.001), and recessive model (OR: 1.43; 95% CI: 1.01, 2.01; P: 0.04). PRKAA2 variation, especially in rs2746342, has an association with T2DM risk in the G allele, additive, dominant, and recessive models. G allele might be the most contributable factor in increasing T2DM susceptibility. © Penerbit Universiti Sains Malaysia, 2022.Entities:
Keywords: AMP-activated protein kinase; Asian; genetic variation; risk factor; type 2 diabetes mellitus
Year: 2022 PMID: 35846493 PMCID: PMC9249426 DOI: 10.21315/mjms2022.29.3.2
Source DB: PubMed Journal: Malays J Med Sci ISSN: 1394-195X
Figure 1Flow chart of the literature selection process
Characteristics of subjects from references included in the review
| Reference | No. case/No. control | Ethnicity | Male/Female | Age | BMI | |||
|---|---|---|---|---|---|---|---|---|
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| Case | Control | Case | Control | Case | Control | |||
| Li et al. ( | 406/214 | Chinese | 251/155 | 120/94 | 56.88 (12.60) | 57.00 (7.98) | 24.47 (2.26) | 22.74 (1.71) |
| Shen et al. ( | 221/111 | Chinese | 153/68 | 76/35 | 56.84 (13.79) | 51.14 (12.78) | 25.74 (3.13) | 24.25 (2.96) |
| Keshavarz et al. ( | 899/871 | Japanese | 448/451 | 428/443 | 63.5 (9.9) | 37.3 (11.7) | NA | NA |
| Horikoshi et al. ( | 192/271 | Japanese | 123/69 | 129/143 | 61.3 (0.6) | 69.1 (0.5) | 24.1 (0.2) | 23.9 (0.2) |
Notes: BMI = body mass index; SD = standard deviation; NA = not available
Cardiometabolic profiles related to T2DM from the studies included in the meta-analysis
| Reference | Groups | FPG | Total cholesterol | Triglycerides mean | HDL-C | LDL-c |
|---|---|---|---|---|---|---|
| Li et al. ( | Case | 7.81 (2.51) | 4.73 (1.28) | 1.90 (1.87) | 3.72 (50.28) | 2.90 (3.16) |
| Control | 5.38 (1.51) | 5.16 (4.31) | 1.68 (3.7) | 1.45 (0.49) | 2.99 (4.75) | |
| Shen et al. ( | Case | 7.74 (2.08) | 4.84 (0.99) | 2.31 (1.85) | 1.10 (0.31) | 2.66 (0.75) |
| Control | 5.15 (0.48) | 4.94 (0.92) | 1.77 (0.99) | 1.17 (0.32) | 2.73 (0.66) |
List of genotype studies included in the review
| First author | Year of publication | Detection method | SNP | Genotype frequency | OR (95% CI) | HWE | |||
|---|---|---|---|---|---|---|---|---|---|
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| Genotype | No. cases | No. control |
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| Li et al. | 2018 | Sequencing | rs10789038 | AA | 292 | 135 | 1.63 (1.10, 2.43) | 0.04 | 0.83 |
| GA | 104 | 68 | |||||||
| GG | 10 | 11 | |||||||
| rs2796498 | GG | 77 | 188 | 0.66 (0.45, 0.96) | 0.92 | 0.34 | |||
| GA | 97 | 180 | |||||||
| AA | 40 | 38 | |||||||
| rs2746342 | AA (TT) | 114 | 83 | 0.75 (0.50, 1.12) | 0.16 | 0.69 | |||
| CA (TG) | 206 | 93 | |||||||
| CC (GG) | 86 | 38 | |||||||
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| Shen et al. | 2016 | Sequencing | rs2746342 | TT | 66 | 51 | 1.99 (1.25, 3.20) | 3.24 | 0.07 |
| TG | 97 | 42 | |||||||
| GG | 58 | 18 | |||||||
| rs2143754 | AA | 82 | 43 | 1.04 (0.64, 1.69) | 0.51 | 0.47 | |||
| AG | 101 | 50 | |||||||
| GG | 38 | 181 | |||||||
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| Keshavarz et al. | 2008 | Taq-Man SNP genotyping assays | rs1418442 | AA | 544 | 517 | 0.62 (0.40, 0.96) | 2.53 | 0.11 |
| AG | 321 | 298 | |||||||
| GG | 34 | 52 | |||||||
| rs932447 | AA | 539 | 518 | 0.62 (0.40, 0.96) | 3.09 | 0.08 | |||
| AG | 325 | 301 | |||||||
| GG | 34 | 52 | |||||||
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| Horikoshi et al. | 2006 | Sequencing | −1439 A > T | AA | 114 | 149 | 0.85 (0.62, 1.16) | 1.02 | 0.31 |
| AT | 71 | 110 | |||||||
| TT | 7 | 13 | |||||||
| rs2051040 | GG | 64 | 106 | 1.21 (0.92, 1.58) | 0.05 | 0.82 | |||
| GA | 95 | 129 | |||||||
| AA | 33 | 37 | |||||||
| rs2796492 | CC | 77 | 85 | 0.80 (0.61, 1.05) | 0.18 | 0.67 | |||
| CT | 87 | 143 | |||||||
| TT | 28 | 44 | |||||||
| rs2796493 | GG | 76 | 83 | 0.78 (0.60, 1.04) | 0.09 | 0.76 | |||
| GA | 88 | 142 | |||||||
| AA | 28 | 47 | |||||||
| rs2796495 | GG | 75 | 82 | 0.80 (0.60, 1.04) | 0.01 | 0.91 | |||
| GA | 90 | 146 | |||||||
| AA | 27 | 44 | |||||||
| 46991G > A | GG | 134 | 176 | 0.81 (0.58, 1.14) | 0.12 | 0.73 | |||
| GA | 52 | 85 | |||||||
| AA | 6 | 11 | |||||||
| rs2143754 | TT | 70 | 83 | 0.77 (0.59, 1.01) | 0.00 | 0.98 | |||
| TC | 92 | 128 | |||||||
| CC | 30 | 61 | |||||||
| rs1418442 | AA | 110 | 144 | 0.89 (0.66, 1.21) | 0.51 | 0.48 | |||
| AG | 73 | 116 | |||||||
| GG | 9 | 12 | |||||||
| rs932447 | AA | 113 | 155 | 1.04 (0.76, 1.42) | 2.04 | 0.15 | |||
| AG | 73 | 110 | |||||||
| GG | 6 | 7 | |||||||
| rs3738568 | TT | 153 | 198 | 0.73 (0.49, 1.08) | 1.34 | 0.25 | |||
| TC | 35 | 68 | |||||||
| CC | 4 | 6 | |||||||
Notes: SNP = single nucleotide polymorphism; OR = odds ratio; HWE = Hardy-Weinberg Equilibrium
Figure 2Forest plot of PRKKA2 rs2746342 genetic variation in different models on the association with T2DM within studies conducted in Asia. A. Allele contrast model (G versus T allele); B. Additive model (GG versus TT); C. Additive model (GG versus TG); D. Dominant model (TG + GG versus TT) and E. Recessive model (GG versus TT + TG)
Meta-analysis results of rs2746342 for PRKAA2
| Genetic models | Sample size | Association test | Heterogeneity test | Model | ||||
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| Case | Control | OR (95% CI) | Z | I2 (%) | ||||
| G versus T | 1254 | 650 | 1.45 (1.20, 1.76) | 3.86 | 0.0001 | 0.23 | 31 | F |
| GG versus TT | 324 | 190 | 1.96 (1.34, 2.87) | 3.47 | 0.0005 | 0.36 | 0 | F |
| GG versus TG | 447 | 191 | 1.14 (0.78, 1.64) | 0.67 | 0.50 | 0.44 | 0 | F |
| TG+GG versus TT | 627 | 325 | 1.75 (1.32, 2.31) | 3.89 | < 0.0001 | 0.49 | 0 | F |
| GG versus TT+TG | 627 | 325 | 1.43 (1.01, 2.01) | 2.04 | 0.04 | 0.29 | 10 | F |
Notes: OR: odds ratio, F: fixed model;
Heterogeneity test were used to determine fixed or random model would be applied
Subgroup analysis of PRKAA2 rs2746342 by gender (using fixed model effect)
| Model | Group | OR (95% CI) | I2 (%) | ||
|---|---|---|---|---|---|
| G versus T | Overall | 1.46 (1.20, 1.77) | 0.0001 | 0 | 0.86 |
| Male | 1.48 (1.16, 1.89) | 0.002 | 0 | ||
| Female | 1.43 (1.04, 1.95) | 0.03 | 23 | ||
| GG versus TT | Overall | 1.89 (1.29, 2.76) | 0.001 | 0 | 0.73 |
| Male | 1.99 (1.22, 3.24) | 0.006 | 0 | ||
| Female | 1.73 (0.94, 3.20) | 0.08 | 0 | ||
| GG versus TG | Overall | 1.14 (0.78, 1.65) | 0.50 | 0 | 0.83 |
| Male | 1.17 (0.73, 1.88) | 0.51 | 0 | ||
| Female | 1.08 (0.60, 1.96) | 0.71 | 0 | ||
| TG+GG versus TT | Overall | 1.34 (1.09, 1.65) | 0.005 | 6 | 0.11 |
| Male | 1.56 (1.18, 2.06) | 0.002 | 0 | ||
| Female | 1.11 (0.81, 1.52) | 0.52 | 0 | ||
| GG versus TT+TG | Overall | 1.37 (0.99, 1.89) | 0.06 | 0 | 0.38 |
| Male | 1.54 (1.01, 2.34) | 0.05 | 0 | ||
| Female | 1.14 (0.68, 1.90) | 0.62 | 0 |
Note: OR = odds ratio