| Literature DB >> 35844239 |
Jing Lin1, Jie Shen2, Juan Liu3, Wenjie Cheng4, Lintian Li4, Fuyong Jiao5.
Abstract
Objective: The aim of the study was to establish whether whole-blood microRNA (miRNA) profiles differ between postural tachycardia syndrome (POTS) sufferers and control subjects and to identify the miRNA that regulates plasma H2S. Study Design: High-throughput sequencing was used to obtain whole-blood miRNA expression profiles for 20 POTS sufferers and 20 normal children.The thresholds for defining differentially expressed miRNAs (DEmiRNAs) were an adjusted DESeq P of <0.05 and a log2 fold variation of ≥3. The DEmiRNA target genes were identified using RNAhybrid and miRanda, and only those identified by both were considered. The combined effects of the DEmiRNAs were determined using KEGG pathway analysis. Another 40 POTS and 20 normal patients were used as validation subjects. Plasma H2S was determined with a sulfide electrode, and flow-mediated vasodilation (FMD) was performed with a color Doppler ultrasound system. miRNAs were analyzed using qRT-PCR.Entities:
Keywords: adolescents; high-throughput sequencing; miR-21; postural tachycardia syndrome; whole blood
Year: 2022 PMID: 35844239 PMCID: PMC9281551 DOI: 10.3389/fnins.2022.920477
Source DB: PubMed Journal: Front Neurosci ISSN: 1662-453X Impact factor: 5.152
Demographic and hemodynamic parameters between patients with POTS and comparison subjects.
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| Age (years) | 12.78 ± 1.21 | 13.12 ± 1.13 | 0.458 | 0.659 |
| Height (cm) | 155.8 ± 13.44 | 157.6 ± 10.73 | 0.234 | 0.821 |
| Weight (kg) | 48.3 ± 11.91 | 48.74 ± 9.91 | 0.063 | 0.951 |
| Supine HR (beats/min) | 72 ± 3.80 | 87.4 ± 9.83 | 3.26 | 0.011 |
| Supine SBP (mmHg) | 102 ± 4.41 | 107.8 ± 10.83 | 1.11 | 0.299 |
| Supine DBP (mmHg) | 68.80 ± 10.61 | 66.40 ± 4.67 | 0.463 | 0.656 |
| Upright HR (beats/min) | 130.40 ± 6.80 | 104.8 ± 12.93 | 3.918 | 0.004 |
| Upright SBP (mmHg) | 116.6 ± 4.87 | 119.40 ± 15.13 | 0.394 | 0.704 |
| Upright DBP (mmHg) | 77.20 ± 3.27 | 76.40 ± 8.96 | 0.88 | 0.856 |
| HR increment (beats/min) | 58.40 ± 8.38 | 17.40 ± 7.19 | 8.297 | <0.001 |
DBP, diastolic blood pressure; HR, heart rate; POTS, postural tachycardia syndrome; SBP, systolic blood pressure.
Figure 1Volcano map of DEmiRNAs. DEmiRNAs between POTS patients and control subjects. Red spots show upregulated miRNAs, while the green spots show downregulated miRNAs (not DEG, not differently expressed genes).
List of 32 differently expressed miRNAs in POTS patients, in comparison with healthy controls (P < 0.05, log2 fold change ≥ 2).
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| 1 | hsa-miR-4707-3p | 6.51 | Up | 0.0318 |
| 2 | hsa-miR-21-5p | 3.78 | Up | 0.0000 |
| 3 | hsa-miR-409-5p | 2.89 | Up | 0.0001 |
| 4 | hsa-miR-4747-3p | 2.45 | Up | 0.0013 |
| 5 | hsa-miR-4676-5p | 2.40 | Up | 0.0057 |
| 6 | hsa-miR-16-2-3p | 2.13 | Up | 0.0000 |
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| 1 | hsa-miR-151b | −4.39 | Down | 0.0000 |
| 2 | hsa-miR-151a-5p | −4.39 | Down | 0.0000 |
| 3 | hsa-miR-548b-5p | −4.11 | Down | 0.0071 |
| 4 | hsa-miR-32-3p | −3.97 | Down | 0.0002 |
| 5 | hsa-miR-15a-5p | −3.65 | Down | 0.0001 |
| 6 | hsa-miR-3613-5p | −3.54 | Down | 0.0034 |
| 7 | hsa-miR-574-5p | −3.52 | Down | 0.0000 |
| 8 | hsa-miR-18b-5p | −3.41 | Down | 0.0001 |
| 9 | hsa-let-7g-3p | −3.30 | Down | 0.0041 |
| 10 | hsa-miR-1278 | −3.19 | Down | 0.0006 |
| 11 | hsa-miR-1-3p | −3.16 | Down | 0.0025 |
| 12 | hsa-miR-548 | −2.74 | Down | 0.0455 |
| 13 | hsa-miR-450b-5p | −2.74 | Down | 0.0001 |
| 14 | hsa-miR-26b-5p | −2.72 | Down | 0.0000 |
| 15 | hsa-miR-16-5p | −2.66 | Down | 0.0000 |
| 16 | hsa-miR-18a-5p | −2.57 | Down | 0.0012 |
| 17 | hsa-miR-424-5p | −2.50 | Down | 0.0035 |
| 18 | hsa-miR-338-3p | −2.48 | Down | 0.0060 |
| 19 | hsa-miR-374a-5p | −2.39 | Down | 0.0005 |
| 20 | hsa-miR-181c-5p | −2.35 | Down | 0.0014 |
| 21 | hsa-miR-5582-3p | −2.17 | Down | 0.0011 |
| 22 | hsa-miR-17-3p | −2.17 | Down | 0.0005 |
| 23 | hsa-miR-98-5p | −2.12 | Down | 0.0001 |
| 24 | hsa-miR-4775 | −2.06 | Down | 0.0229 |
| 25 | hsa-miR-450a-5p | −2.05 | Down | 0.0001 |
| 26 | hsa-miR-4482-3p | −2.03 | Down | 0.0415 |
Target gene count of the 13 miRNAs with a log2 fold change ≥3.
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| hsa-miR-4707-3p | 86 | 215 | Up | 6.51 |
| hsa-miR-21-5p | 1 | 2 | Up | 3.78 |
| hsa-miR-151b | 10 | 19 | Down | −4.39 |
| hsa-miR-151a-5p | 12 | 22 | Down | −4.39 |
| hsa-miR-548b-5p | 22 | 33 | Down | −4.11 |
| hsa-miR-32-3p | 1 | 1 | Down | −3.97 |
| hsa-miR-15a-5p | 3 | 19 | Down | −3.65 |
| has-miR-3613-5p | 0 | 2 | Down | −3.54 |
| hsa-miR-574-5p | 49 | 119 | Down | −3.52 |
| hsa-miR-18b-5p | 1 | 13 | Down | −3.41 |
| hsa-let-7g-3p | 11 | 28 | Down | −3.30 |
| hsa-miR-1278 | 0 | 4 | Down | −3.19 |
| hsa-miR-1-3p | 2 | 4 | Down | −3.16 |
Figure 2GO enrichment bar chart for the target genes of DEmiRNAs. Varying categories of GO function are indicated by different colors, while the quantity of differential genes enriched per GO category is denoted by the number shown at each bar end (BP, biological process; CC, cellular component; MF, molecular function).
Figure 3Scatter plot of KEGG pathway enrichment. The abscissa indicates the GeneRatio, which refers to the pathway-enriched genes as a percentage of the overall enriched genes. Meanwhile, the ordinate indicates -log10 (Q-value), an adjusted value of P. The quantity of pathway enriched genes is reflected by the size of dot, while the P value is indicated by the color.
Distribution of characteristics of subjects in the validation group.
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| Gender(M/F) | 17/23 | 7/13 | 0.313 | 0.576 |
| Age(years) | 12.63 ± 1.59 | 13.35 ± 1.04 | 1.841 | 0.071 |
| Height(cm) | 151.28 ± 12.91 | 156.95 ± 9.774 | 1.73 | 0.089 |
| Weight(kg) | 43.76 ± 7.668 | 47.15 ± 8.916 | 1.527 | 0.132 |
| Supine HR(mmHg) | 78.50 ± 8.412 | 82.40 ± 10.826 | 1.536 | 0.13 |
| Supine SBP(mmHg) | 103.18 ± 8.161 | 108.90 ± 9.503 | 2.424 | 0.018 |
| Supine DBP(mmHg) | 62.50 ± 7.383 | 67.40 ± 6.099 | 2.56 | 0.013 |
| Upright HR(beats/min) | 117.53 ± 13.435 | 103.95 ± 10.724 | 3.93 | <0.001 |
| Upright SBP(mmHg) | 106.73 ± 11.327 | 114.55 ± 10.175 | 2.606 | 0.012 |
| Upright DBP(mmHg) | 69.05 ± 8.280 | 74.75 ± 7.793 | 2.562 | 0.013 |
| HR increament(beats/min) | 39.02 ± 10.56 | 21.55 ± 10.45 | 6.061 | <0.001 |
DBP, diastolic blood pressure; HR, heart rate; POTS, postural tachycardia syndrome; SBP, systolic blood pressure.
Figure 4Plasma H2S, FMD, FMD, and the level of the 13 whole-blood DEmiRNAs in POTS patients and the control. *P<0.05 when compare with control group.
Diagnostic test of miR-21.
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| Plasma miR-21 | POTS | 37 | 0 | 37 |
| Control | 3 | 20 | 23 | |
| Totally | 40 | 20 | 60 | |