| Literature DB >> 35841460 |
Jing Wang1, Zhibo Yang1, Gaoge Wang1, Shuai Shang1,2, Xuexi Tang1,3, Hui Xiao4,5.
Abstract
The epiphytic bacteria are the most abundant microorganisms on marine macroalga. However, there are few studies on the distribution of these epiphytic bacteria on male and female Sargassum thunbergii. In this study, the composition and diversity of epiphytic bacterial communities on male and female S. thunbergii were investigated by using the traditional culture-based method and 16S rDNA high-throughput sequencing. The results showed that the dominant bacterial phyla and genera were the same on both male and female S. thunbergii. However, there were significant differences in the relative abundance of epiphytic bacteria at the genus level. Furthermore, male and female S. thunbergii had their own indicative species and specific bacteria. In addition, the predicted functions of the epiphytic bacteria mainly differed in transport and metabolism, environmental adaptation and spore development. This study enriches the baseline knowledge of epiphytic bacteria related to dioecious algae and paves the way for further studies of the relationships between epiphytic microbial communities and the sex of algae.Entities:
Keywords: 16S rDNA high-throughput sequencing; Diversity; Epiphytic bacteria; Male and female; Sargassum thunbergii
Year: 2022 PMID: 35841460 PMCID: PMC9288574 DOI: 10.1186/s13568-022-01439-1
Source DB: PubMed Journal: AMB Express ISSN: 2191-0855 Impact factor: 4.126
Fig. 1Venn diagram of A culturable heterotrophic epiphytic bacteria on male and female S. thunbergii at the species level. B Numbers indicate numbers of B-1 all the ASVs of epiphytic bacteria on male and female S. thunbergii, B-2 abundant epiphytic bacteria on male and female S. thunbergii, B-3 rare epiphytic bacteria on male and female S. thunbergii
Alpha-diversity indices of the epiphytic bacteria on both male and female S. thunbergii
| All | Abundant | Rare | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Male | Female | Male | Female | Male | Female | ||||
| Chao1 | 1182 | 979 | 0.078 | 429 | 274 | 0.052 | |||
| Shannon | 8.510 | 8.360 | 0.359 | 3.380 | 3.460 | 0.009** | 5.669 | 5.267 | 0.065 |
| Simpson | 0.991 | 0.993 | 0.291 | 0.951 | 0.960 | 0.013* | 0.994 | 0.992 | 0.192 |
| Fisher | 183.885 | 149.064 | 0.067 | 4.743 | 4.683 | 0.411 | 110.966 | 77.048 | 0.045* |
*P < 0.05 reflects significant difference, and **P < 0.01 reflects extremely significant difference
Abundant ASVs were persistent across all samples, and the values and P values of Chao1 indices cannot be calculated
Fig. 2Volcano plot displaying the increased and decreased relative abundance of ASVs associated with male and female S. thunbergii. The P values were calculated based on DEseq using a negative binomial distribution. The y-axis represents the mean relative abundance value of log10 (P value, t test), and the x-axis displays the log2-fold value. The red dots represent the ASVs with increased relative abundance (n = 92, P < 0.05) of female S. thunbergii, and the blue dots represent the ASVs with decreased relative abundance compared to those of male S. thunbergii. (n = 139, P < 0.05). Log2(fc) cut-off: 2
Composition of the epiphytic bacterial ASVs of male and female S. thunbergii
| Sample | Phylum | Class | Order | Family | Genus |
|---|---|---|---|---|---|
| Male | 21 | 41 | 73 | 124 | 184 |
| Female | 18 | 36 | 67 | 111 | 169 |
| Features sequences of both sexes | 16 | 31 | 61 | 103 | 145 |
| Only found on males | 5 | 10 | 12 | 21 | 39 |
| Only found on females | 2 | 5 | 6 | 8 | 24 |
| Total | 23 | 46 | 79 | 132 | 208 |
Fig. 3Composition of epiphytic bacteria of male and female S. thunbergii. A Phylum level; B family level; C genus level
Relative abundance of dominant epiphytic bacteria and male- and female-specific bacteria at the genus level
| Genus | Male (%) | Female (%) |
|---|---|---|
| 11.08 ± 2.00 | 16.84 ± 1.80 | |
| 11.18 ± 1.50 | 10.69 ± 1.20 | |
| 5.50 ± 0.30 | 5.16 ± 0.60 | |
| 6.88 ± 0.40 | 3.28 ± 0.20 | |
| 3.18 ± 0.10 | 4.90 ± 0.15 | |
| 0.2298 ± 0.01 | 0 | |
| 0.0715 ± 0.01 | 0 | |
| 0.0581 ± 0.01 | 0 | |
| 0 | 0.0556 ± 0.01 | |
| 0 | 0.0425 ± 0.01 | |
| 0 | 0.0387 ± 0.01 |
Performed by calculating the relative abundance across samples and normalizing to 100%. Values are expressed as the mean ± SD (standard deviation)
Fig. 4Indicative taxa for male and female S. thunbergii. A forest plot showing taxa that were significantly differentially abundant between the male (red) and female (blue) groups as determined using the Kruskal–Wallis test. LDA score (effect size) indicating significant differences in bacterial taxa (P‐value: Wilcoxon rank‐sum test, LDA score > 3.0)
Fig. 5Predicted functions of epiphytic bacteria on male and female S. thunbergii. Heatmap of predicted microbial functions by PICRUST2