Literature DB >> 35838957

SARS-CoV-2 Host Immunogenetic Biomarkers.

Maemu P Gededzha1,2, Nakampe Mampeule3,4, Anastasia Gandini3,4, Elizabeth S Mayne3,4,5.   

Abstract

SARS-CoV-2 causes generally mild symptoms, with approximately 10-20% of cases progressing to severe disease. The pathophysiologic mechanisms by which SARS-CoV-2 causes severe disease are largely unknown. Data have indicated the involvement of different immunogenetic markers such as HLA, T, and B cells, to be associated with disease outcome. This has led to interest in these genes as potential biomarkers of SARS-CoV-2 susceptibility and for predicting prognosis and response to vaccines and other therapeutic strategies. In this chapter, we discussed outline protocols for characterizing these potential biomarkers and methods for identifying SARS-CoV-2 biomarkers using the Luminex® 100/200 technology and next-generation sequencing.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  B cell; HLA; Immunogenetic marker; Luminex; NGS; Next-generation sequencing; SARS-COV-2; T cell

Mesh:

Substances:

Year:  2022        PMID: 35838957     DOI: 10.1007/978-1-0716-2395-4_10

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  16 in total

1.  Human Leukocyte Antigen Susceptibility Map for Severe Acute Respiratory Syndrome Coronavirus 2.

Authors:  Austin Nguyen; Julianne K David; Sean K Maden; Mary A Wood; Benjamin R Weeder; Abhinav Nellore; Reid F Thompson
Journal:  J Virol       Date:  2020-06-16       Impact factor: 5.103

2.  Development of a high-resolution NGS-based HLA-typing and analysis pipeline.

Authors:  Michael Wittig; Jarl A Anmarkrud; Jan C Kässens; Simon Koch; Michael Forster; Eva Ellinghaus; Johannes R Hov; Sascha Sauer; Manfred Schimmler; Malte Ziemann; Siegfried Görg; Frank Jacob; Tom H Karlsen; Andre Franke
Journal:  Nucleic Acids Res       Date:  2015-03-09       Impact factor: 16.971

3.  Reduction and Functional Exhaustion of T Cells in Patients With Coronavirus Disease 2019 (COVID-19).

Authors:  Bo Diao; Chenhui Wang; Yingjun Tan; Xiewan Chen; Ying Liu; Lifen Ning; Li Chen; Min Li; Yueping Liu; Gang Wang; Zilin Yuan; Zeqing Feng; Yi Zhang; Yuzhang Wu; Yongwen Chen
Journal:  Front Immunol       Date:  2020-05-01       Impact factor: 7.561

Review 4.  Next-Generation Sequencing Based HLA Typing: Deciphering Immunogenetic Aspects of Sarcoidosis.

Authors:  Amit Kishore; Martin Petrek
Journal:  Front Genet       Date:  2018-10-25       Impact factor: 4.599

Review 5.  HLA, Immune Response, and Susceptibility to COVID-19.

Authors:  Fataneh Tavasolian; Mohsen Rashidi; Gholam Reza Hatam; Marjan Jeddi; Ahmad Zavaran Hosseini; Sayed Hussain Mosawi; Elham Abdollahi; Robert D Inman
Journal:  Front Immunol       Date:  2021-01-08       Impact factor: 7.561

6.  Association of HLA Class I Genotypes With Severity of Coronavirus Disease-19.

Authors:  Maxim Shkurnikov; Stepan Nersisyan; Tatjana Jankevic; Alexei Galatenko; Ivan Gordeev; Valery Vechorko; Alexander Tonevitsky
Journal:  Front Immunol       Date:  2021-02-23       Impact factor: 7.561

7.  Corrigendum: Longitudinal Analysis of T and B Cell Receptor Repertoire Transcripts Reveal Dynamic Immune Response in COVID-19 Patients.

Authors:  Xuefeng Niu; Song Li; Pingchao Li; Wenjing Pan; Qian Wang; Ying Feng; Xiaoneng Mo; Qihong Yan; Xianmiao Ye; Jia Luo; Linbing Qu; Daniel Weber; Miranda L Byrne-Steele; Zhe Wang; Fengjia Yu; Fang Li; Richard M Myers; Michael T Lotze; Nanshan Zhong; Jian Han; Ling Chen
Journal:  Front Immunol       Date:  2020-12-21       Impact factor: 7.561

8.  High resolution human leukocyte antigen class I allele frequencies and HIV-1 infection associations in Chinese Han and Uyghur cohorts.

Authors:  Yanhou Liu; Zhongfang Zhao; Tianyi Li; Qi Liao; Nicholas Kushner; Neal Y Touzjian; Yiming Shao; Yongtao Sun; Amie J Strong; Yichen Lu
Journal:  PLoS One       Date:  2012-12-12       Impact factor: 3.240

Review 9.  Association between HLA genotypes and COVID-19 susceptibility, severity and progression: a comprehensive review of the literature.

Authors:  Filippo Migliorini; Ernesto Torsiello; Filippo Spiezia; Francesco Oliva; Markus Tingart; Nicola Maffulli
Journal:  Eur J Med Res       Date:  2021-08-03       Impact factor: 2.175

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