Literature DB >> 35836852

Identification and verification of a prognostic ferroptosis-related lncRNAs signature for patients with lung adenocarcinoma.

Kai Qi1, Xin-Liang Liu1, Xiang-Lai Chen1, Chao Song1, Jin-Hua Peng1, Jian-Jun Xu1.   

Abstract

Lung cancer has been identified as one of the deadliest malignant tumors worldwide. Mounting evidence suggests that ferroptosis is a well-known non-apoptotic cell death process that participates in pathological mechanisms and is a new cancer treatment strategy. Aberrantly expressed long non-coding RNAs (lncRNAs) that drive lung cancer progression have attracted increasing attention. Herein, we explored the prognostic significance of ferroptosis-related lncRNAs in lung cancer patients. LUAD gene expression patterns and clinicopathological data were downloaded from The Cancer Genome Atlas (TCGA) database. Based on LASSO-Cox regression, A 14 ferroptosis-related differentially expressed lncRNAs (FRDELs) signature was constructed. Subsequently, a nomogram model for predicting the prognosis of LUAD patients was constructed based on clinicopathological data and the 14 - FRDELs signature. The signature was shown to be correlated with tumor mutational burden (TMB) and immune cell infiltration within the tumor microenvironment. Furthermore, Gene Set Enrichment Analysis (GSEA) confirmed that the signature was correlated with LUAD-related biological functions such as the P53 signaling pathway, DNA replication, and cell cycle. The roles and mechanisms of PACERR in the signature were explored by si-lncRNA-mediated knockdown and transfection-mediated overexpression via in vitro experiments in A549 and H1299 cells. PACERR was significantly upregulated in A549 and H1299 cells, and higher expression promoted LUAD cell proliferation, migration, and invasion via in vitro experiments, while knockdown of PACERR presented the opposite effects. In conclusion, our study provided information regarding ferroptosis-related lncRNA expression and established a prognostic nomogram based on 14 FRDELs to predict overall survival in LUAD accurately. Additionally, our results in vitro revealed that PACERR played an oncogenic role in LUAD proliferation and metastasis, which provides mechanistic insights into the roles of ferroptosis-related lncRNA in LUAD progression and that it may be a potential biomarker for LUAD treatment. AJTR
Copyright © 2022.

Entities:  

Keywords:  Ferroptosis; LUAD; TCGA; lncRNA; lncRNA PACERR; survival

Year:  2022        PMID: 35836852      PMCID: PMC9274545     

Source DB:  PubMed          Journal:  Am J Transl Res        ISSN: 1943-8141            Impact factor:   3.940


  44 in total

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Review 2.  Regulation of gene expression by cis-acting long non-coding RNAs.

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Authors:  Hossein Borghaei; Luis Paz-Ares; Leora Horn; David R Spigel; Martin Steins; Neal E Ready; Laura Q Chow; Everett E Vokes; Enriqueta Felip; Esther Holgado; Fabrice Barlesi; Martin Kohlhäufl; Oscar Arrieta; Marco Angelo Burgio; Jérôme Fayette; Hervé Lena; Elena Poddubskaya; David E Gerber; Scott N Gettinger; Charles M Rudin; Naiyer Rizvi; Lucio Crinò; George R Blumenschein; Scott J Antonia; Cécile Dorange; Christopher T Harbison; Friedrich Graf Finckenstein; Julie R Brahmer
Journal:  N Engl J Med       Date:  2015-09-27       Impact factor: 91.245

5.  Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression.

Authors:  Etienne Becht; Nicolas A Giraldo; Laetitia Lacroix; Bénédicte Buttard; Nabila Elarouci; Florent Petitprez; Janick Selves; Pierre Laurent-Puig; Catherine Sautès-Fridman; Wolf H Fridman; Aurélien de Reyniès
Journal:  Genome Biol       Date:  2016-10-20       Impact factor: 13.583

Review 6.  Combination Strategies for Immune-Checkpoint Blockade and Response Prediction by Artificial Intelligence.

Authors:  Florian Huemer; Michael Leisch; Roland Geisberger; Thomas Melchardt; Gabriel Rinnerthaler; Nadja Zaborsky; Richard Greil
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Review 7.  Mechanisms of Ferroptosis and Relations With Regulated Cell Death: A Review.

Authors:  Pengxu Lei; Tao Bai; Yuling Sun
Journal:  Front Physiol       Date:  2019-02-26       Impact factor: 4.566

Review 8.  Ferroptosis, a new form of cell death: opportunities and challenges in cancer.

Authors:  Yanhua Mou; Jun Wang; Jinchun Wu; Dan He; Chunfang Zhang; Chaojun Duan; Bin Li
Journal:  J Hematol Oncol       Date:  2019-03-29       Impact factor: 17.388

9.  Gold nanomaterials in the management of lung cancer.

Authors:  Ainoa Guinart; Hannah L Perry; James D E T Wilton-Ely; Teresa D Tetley
Journal:  Emerg Top Life Sci       Date:  2020-12-03

10.  Estimating the global cancer incidence and mortality in 2018: GLOBOCAN sources and methods.

Authors:  J Ferlay; M Colombet; I Soerjomataram; C Mathers; D M Parkin; M Piñeros; A Znaor; F Bray
Journal:  Int J Cancer       Date:  2018-12-06       Impact factor: 7.396

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