Literature DB >> 35835958

Differences in the methanogen community between the nearshore and offshore sediments of the South Yellow Sea.

Ye Chen1, Yu Zhen2,3,4, Jili Wan5,6,7, Xia Yin2,3,4, Siqi Li2,3,8, Jiayin Liu5,7,9, Guodong Zhang6,7, Tiezhu Mi10,11,12,13.   

Abstract

The differences in methanogen abundance and community composition were investigated between nearshore and offshore sediments in the South Yellow Sea (SYS). Shannon, Simpson, and Chao1 indices revealed a higher diversity of methanogens in the nearshore sediments than in the offshore sediments. The Mann-Whitney U test demonstrated that the relative abundance of Methanococcoides was significantly higher in the offshore sediments, while the relative abundances of Methanogenium, Methanosarcina, Methanosaeta, Methanolinea, and Methanomassiliicoccus were significantly higher in the nearshore sediments (P < 0.05). The abundance of the mcrA gene in the nearshore sediments was significantly higher than that in the offshore sediments. Furthermore, a similar vertical distribution of the methanogen and sulfate-reducing bacteria (SRB) abundances was observed in the SYS sediments, implying there is potential cooperation between these two functional microbes in this environment. Finally, total organic carbon (TOC) was significantly correlated with methanogen community composition.
© 2022. Author(s).

Entities:  

Keywords:  South Yellow Sea; high-throughput sequencing; mcrA gene; methanogen community; shallow sediments

Mesh:

Year:  2022        PMID: 35835958     DOI: 10.1007/s12275-022-2022-2

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   2.902


  27 in total

1.  DsrB gene-based DGGE for community and diversity surveys of sulfate-reducing bacteria.

Authors:  Joke Geets; Brigitte Borremans; Ludo Diels; Dirk Springael; Jaco Vangronsveld; Daniel van der Lelie; Karolien Vanbroekhoven
Journal:  J Microbiol Methods       Date:  2005-12-07       Impact factor: 2.363

2.  Diversity of Archaea in marine sediments from Skan Bay, Alaska, including cultivated methanogens, and description of Methanogenium boonei sp. nov.

Authors:  Melissa M Kendall; George D Wardlaw; Chin F Tang; Adam S Bonin; Yitai Liu; David L Valentine
Journal:  Appl Environ Microbiol       Date:  2006-11-22       Impact factor: 4.792

3.  Methanogenic diversity and activity in hypersaline sediments of the centre of the Napoli mud volcano, Eastern Mediterranean Sea.

Authors:  Cassandre Sara Lazar; R John Parkes; Barry A Cragg; Stéphane L'Haridon; Laurent Toffin
Journal:  Environ Microbiol       Date:  2011-03-07       Impact factor: 5.491

4.  Methanococcoides vulcani sp. nov., a marine methylotrophic methanogen that uses betaine, choline and N,N-dimethylethanolamine for methanogenesis, isolated from a mud volcano, and emended description of the genus Methanococcoides.

Authors:  Stéphane L'Haridon; Morgane Chalopin; Delphine Colombo; Laurent Toffin
Journal:  Int J Syst Evol Microbiol       Date:  2014-03-10       Impact factor: 2.747

5.  Hydrogen 'leakage' during methanogenesis from methanol and methylamine: implications for anaerobic carbon degradation pathways in aquatic sediments.

Authors:  Niko Finke; Tori Michael Hoehler; Bo Barker Jørgensen
Journal:  Environ Microbiol       Date:  2007-04       Impact factor: 5.491

6.  Niche Differentiation of Sulfate- and Iron-Dependent Anaerobic Methane Oxidation and Methylotrophic Methanogenesis in Deep Sea Methane Seeps.

Authors:  Haizhou Li; Qunhui Yang; Huaiyang Zhou
Journal:  Front Microbiol       Date:  2020-07-08       Impact factor: 5.640

Review 7.  Anaerobic oxidation of methane: progress with an unknown process.

Authors:  Katrin Knittel; Antje Boetius
Journal:  Annu Rev Microbiol       Date:  2009       Impact factor: 15.500

8.  UCHIME improves sensitivity and speed of chimera detection.

Authors:  Robert C Edgar; Brian J Haas; Jose C Clemente; Christopher Quince; Rob Knight
Journal:  Bioinformatics       Date:  2011-06-23       Impact factor: 6.937

9.  Stratified active archaeal communities in the sediments of Jiulong River estuary, China.

Authors:  Qianqian Li; Fengping Wang; Zhiwei Chen; Xijie Yin; Xiang Xiao
Journal:  Front Microbiol       Date:  2012-08-30       Impact factor: 5.640

10.  Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.

Authors:  Nicholas A Bokulich; Sathish Subramanian; Jeremiah J Faith; Dirk Gevers; Jeffrey I Gordon; Rob Knight; David A Mills; J Gregory Caporaso
Journal:  Nat Methods       Date:  2012-12-02       Impact factor: 28.547

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