Literature DB >> 35834495

A QUBO formulation for top-τ eigencentrality nodes.

Prosper D Akrobotu1,2, Tamsin E James2, Christian F A Negre3, Susan M Mniszewski2.   

Abstract

The efficient calculation of the centrality or "hierarchy" of nodes in a network has gained great relevance in recent years due to the generation of large amounts of data. The eigenvector centrality (aka eigencentrality) is quickly becoming a good metric for centrality due to both its simplicity and fidelity. In this work we lay the foundations for solving the eigencentrality problem of ranking the importance of the nodes of a network with scores from the eigenvector of the network, using quantum computational paradigms such as quantum annealing and gate-based quantum computing. The problem is reformulated as a quadratic unconstrained binary optimization (QUBO) that can be solved on both quantum architectures. The results focus on correctly identifying a given number of the most important nodes in numerous networks given by the sparse vector solution of our QUBO formulation of the problem of identifying the top-τ highest eigencentrality nodes in a network on both the D-Wave and IBM quantum computers.

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Year:  2022        PMID: 35834495      PMCID: PMC9282604          DOI: 10.1371/journal.pone.0271292

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.752


  10 in total

1.  Eigenvector centrality for characterization of protein allosteric pathways.

Authors:  Christian F A Negre; Uriel N Morzan; Heidi P Hendrickson; Rhitankar Pal; George P Lisi; J Patrick Loria; Ivan Rivalta; Junming Ho; Victor S Batista
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-10       Impact factor: 11.205

2.  The centrality of a graph.

Authors:  G Sabidussi
Journal:  Psychometrika       Date:  1966-12       Impact factor: 2.500

3.  Eigenvector centrality for geometric and topological characterization of porous media.

Authors:  Joaquin Jimenez-Martinez; Christian F A Negre
Journal:  Phys Rev E       Date:  2017-07-13       Impact factor: 2.529

4.  Ranking candidate disease genes from gene expression and protein interaction: a Katz-centrality based approach.

Authors:  Jing Zhao; Ting-Hong Yang; Yongxu Huang; Petter Holme
Journal:  PLoS One       Date:  2011-09-02       Impact factor: 3.240

5.  Detecting multiple communities using quantum annealing on the D-Wave system.

Authors:  Christian F A Negre; Hayato Ushijima-Mwesigwa; Susan M Mniszewski
Journal:  PLoS One       Date:  2020-02-13       Impact factor: 3.240

6.  How accurate and statistically robust are catalytic site predictions based on closeness centrality?

Authors:  Eric Chea; Dennis R Livesay
Journal:  BMC Bioinformatics       Date:  2007-05-11       Impact factor: 3.169

7.  The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics.

Authors:  Haiyuan Yu; Philip M Kim; Emmett Sprecher; Valery Trifonov; Mark Gerstein
Journal:  PLoS Comput Biol       Date:  2007-02-14       Impact factor: 4.475

8.  Quantum isomer search.

Authors:  Jason P Terry; Prosper D Akrobotu; Christian F A Negre; Susan M Mniszewski
Journal:  PLoS One       Date:  2020-01-15       Impact factor: 3.240

9.  Tracking the spread of COVID-19 in India via social networks in the early phase of the pandemic.

Authors:  Sarita Azad; Sushma Devi
Journal:  J Travel Med       Date:  2020-12-23       Impact factor: 8.490

  10 in total
  1 in total

1.  Computing molecular excited states on a D-Wave quantum annealer.

Authors:  Alexander Teplukhin; Brian K Kendrick; Susan M Mniszewski; Yu Zhang; Ashutosh Kumar; Christian F A Negre; Petr M Anisimov; Sergei Tretiak; Pavel A Dub
Journal:  Sci Rep       Date:  2021-09-22       Impact factor: 4.996

  1 in total

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