Literature DB >> 35813478

Establishment and Validation of an Interferon-Stimulated Genes (ISGs) Prognostic Signature in Pan-cancer Patients: A Multicenter, Real-world Study.

Zheng Zhou1, Yujia Zheng1, Shaobo Mo2, Shuofeng Li3, Xinlei Zheng4, Ran Wei3, Tao Fan1, Tianli Chen3, Chu Xiao1, Chunxiang Li1, Jie He1.   

Abstract

Our study aims at developing an interferon-stimulated genes (ISGs) signature that could predict overall survival (OS) in cancer patients, which enrolled a total of 5643 pan-cancer patients. Linear models for microarray data method analysis were conducted to identify the differentially expressed prognostic genes in the global ISGs family. Time-dependent receiver operating characteristic (ROC) and Kaplan-Meier survival analysis were used to test the efficiency of a multi-gene signature in predicting the prognosis of pan-cancer patients. The prognostic performance and potential biological function of gene signature were verified by quantitative real-time PCR in a pan-cancer independent cohort. Three ISGs genes were finally identified to build a classifier, a specific risk score formula, with which patients were classified into the low- or high-risk groups. Time-dependent ROC analyses proved prognostic accuracy. Then, its prognostic value was validated in seven external validation series. A nomogram was constructed to guide the individualized treatment of patients with lung adenocarcinoma. Biological pathway and tumor immune infiltration analysis showed that the signature might cause poor prognosis by blocking NK cell activation. Finally, the signature in our centers was confirmed by real-time quantitative PCR. A robust ISGs-related feature was discovered to effectively classify pan-cancer patients into subgroups with different OS. © The author(s).

Entities:  

Keywords:  Interferon-stimulated Genes; Natural Killer Cells; Pan-cancer Study; Tumor Biomarkers

Mesh:

Substances:

Year:  2022        PMID: 35813478      PMCID: PMC9254476          DOI: 10.7150/ijbs.71385

Source DB:  PubMed          Journal:  Int J Biol Sci        ISSN: 1449-2288            Impact factor:   10.750


  41 in total

Review 1.  IFNγ: signalling, epigenetics and roles in immunity, metabolism, disease and cancer immunotherapy.

Authors:  Lionel B Ivashkiv
Journal:  Nat Rev Immunol       Date:  2018-09       Impact factor: 53.106

2.  Mechanism of Ska Recruitment by Ndc80 Complexes to Kinetochores.

Authors:  Paweł Ł Janczyk; Katarzyna A Skorupka; John G Tooley; Daniel R Matson; Cortney A Kestner; Thomas West; Owen Pornillos; P Todd Stukenberg
Journal:  Dev Cell       Date:  2017-05-22       Impact factor: 12.270

3.  Nivolumab Plus Erlotinib in Patients With EGFR-Mutant Advanced NSCLC.

Authors:  Scott Gettinger; Matthew D Hellmann; Laura Q M Chow; Hossein Borghaei; Scott Antonia; Julie R Brahmer; Jonathan W Goldman; David E Gerber; Rosalyn A Juergens; Frances A Shepherd; Scott A Laurie; Tina C Young; Xuemei Li; William J Geese; Naiyer Rizvi
Journal:  J Thorac Oncol       Date:  2018-05-23       Impact factor: 15.609

4.  A Pan-cancer Landscape of Interactions between Solid Tumors and Infiltrating Immune Cell Populations.

Authors:  David Tamborero; Carlota Rubio-Perez; Ferran Muiños; Radhakrishnan Sabarinathan; Josep M Piulats; Aura Muntasell; Rodrigo Dienstmann; Nuria Lopez-Bigas; Abel Gonzalez-Perez
Journal:  Clin Cancer Res       Date:  2018-04-17       Impact factor: 12.531

5.  Opposing Functions of Interferon Coordinate Adaptive and Innate Immune Responses to Cancer Immune Checkpoint Blockade.

Authors:  Joseph L Benci; Lexus R Johnson; Ruth Choa; Yuanming Xu; Jingya Qiu; Zilu Zhou; Bihui Xu; Darwin Ye; Katherine L Nathanson; Carl H June; E John Wherry; Nancy R Zhang; Hemant Ishwaran; Matthew D Hellmann; Jedd D Wolchok; Taku Kambayashi; Andy J Minn
Journal:  Cell       Date:  2019-08-08       Impact factor: 41.582

6.  AHNAK2 is a novel prognostic marker and correlates with immune infiltration in papillary thyroid cancer: Evidence from integrated analysis.

Authors:  Long Zheng; Shanshan Li; Xianghong Zheng; Rong Guo; Wei Qu
Journal:  Int Immunopharmacol       Date:  2020-11-18       Impact factor: 4.932

7.  A diverse range of gene products are effectors of the type I interferon antiviral response.

Authors:  John W Schoggins; Sam J Wilson; Maryline Panis; Mary Y Murphy; Christopher T Jones; Paul Bieniasz; Charles M Rice
Journal:  Nature       Date:  2011-04-10       Impact factor: 49.962

8.  Robust enumeration of cell subsets from tissue expression profiles.

Authors:  Aaron M Newman; Chih Long Liu; Michael R Green; Andrew J Gentles; Weiguo Feng; Yue Xu; Chuong D Hoang; Maximilian Diehn; Ash A Alizadeh
Journal:  Nat Methods       Date:  2015-03-30       Impact factor: 28.547

9.  Visualization and Analysis in the Field of Pan-Cancer Studies and Its Application in Breast Cancer Treatment.

Authors:  Xianwen Zhang; Han Lai; Fan Zhang; Yixi Wang; Li Zhang; Ni Yang; Chunrong Wang; Zheng Liang; Jieping Zeng; Jinrong Yang
Journal:  Front Med (Lausanne)       Date:  2021-02-17

Review 10.  Combination therapy with PD-1/PD-L1 blockade in non-small cell lung cancer: strategies and mechanisms.

Authors:  Mu-Yang Huang; Xiao-Ming Jiang; Bing-Lin Wang; Yang Sun; Jin-Jian Lu
Journal:  Pharmacol Ther       Date:  2020-09-25       Impact factor: 12.310

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