| Literature DB >> 35811791 |
Maram Elnosh1, Hisham Altayb2, Yousif Hamedelnil1, Wafa Elshareef3, Aliaa Abugrain4, Esraa Osman1, Aalaa Albasha1, Abdelhamid Abdelhamid1, Ehssan Moglad5, Ahmed AbdAlla6, Ahmed Ismail1,7.
Abstract
Background: The continuous rise in the number of patients suffering from Helicobacter pylori is probably due to the changes in modern life. Nowadays, patients suffering from gastrointestinal problems are diagnosed through invasive and non-invasive techniques. The choice of a diagnostic test is influenced by factors such as the tests' sensitivity and specificity, the clinical conditions, and the cost-effectiveness of the testing strategy. This study aimed to compare molecular detection methods of H. pylori by polymerase chain reaction (PCR) targeting the 16S rRNA, ureA and glmM genes with an invasive histopathological technique.Entities:
Keywords: 16S rRNA; Helicobacter pylori; Histopathology; Khartoum.; PCR; sensitivity; specificity; ureA
Mesh:
Substances:
Year: 2022 PMID: 35811791 PMCID: PMC9214269 DOI: 10.12688/f1000research.75873.2
Source DB: PubMed Journal: F1000Res ISSN: 2046-1402
Sociodemographic and clinical data for participated patients.
| Patients characters (n=290) | Number (%) |
|---|---|
|
| |
| Males | 159 (54.8) |
| Females | 131 (45.1) |
|
| |
| 14-29 | 72 (24.8%) |
| 30-49 | 117 (40.3%) |
| 50 years and older | 101 (34.8%) |
|
| |
| Khartoum locality | 175 (60.3) |
| Omdurman locality | 115 (39.7) |
|
| |
| gastritis | 194 (66.9) |
| gastric ulcer | 29 (10.0) |
| duodenal ulcer | 27 (9.3) |
| esophagitis | 13 (4.5) |
| normal gastric mucosa | 27 (9.3) |
|
| |
| Dyspepsia | 118 (40.7) |
| Vomiting | 26 (9.0) |
| Dysphagia | 22 (7.6) |
| Abdominal pain | 72 (24.8) |
| Acidity | 52 (17.9) |
Samples were collected from two localities in Khartoum State.
Figure 1. PCR amplification of H. pylori on agarose gel electrophoresis 1.5%.
a. 16S rRNA gene. Lane 8 marker (100–1500 bp), lane 7 positive control, lanes 2–5 contain positive samples (532 bp), lanes 1 and 6 are negative samples. b. glmM gene, lane 5 marker (100–1500 bp), lane 4 positive control, lanes 1,6, and 7 contain amplicons of glmM (294 bp), lanes 2 and 3 are negative samples. c. ureA gene. Lane 1 marker (100–1500 bp), lane 8 positive control, lanes 4 and 7 contain amplicons of ureA (217 bp), lanes 2, 3, 5, and 6 are negative samples.
Comparison between histopathological approach and various PCR methods used for the diagnosis of H. pylori infections in this study.
| PCR methods | Histopathological technique |
| Odds ratio | Sensitivity (%) | Specificity (%) | PPV (%) | NPV (%) | ||
|---|---|---|---|---|---|---|---|---|---|
| Positive | Negative | ||||||||
|
|
| 48 | 40 | <0.05 | 3.207 | 46.6 | 78.6 | 54.5 | 72.8 |
|
| 55 | 147 | |||||||
|
|
| 25 | 14 | <0.05 | 3.961 | 24.3 | 92.5 | 64.1 | 68.9 |
|
| 78 | 173 | |||||||
|
|
| 24 | 32 | 0.201 | 1.472 | 23.3 | 82.3 | 42.9 | 66.2 |
|
| 79 | 155 | |||||||
| Total | 103 | 187 | |||||||