Literature DB >> 35811036

Identification and demonstration of roGFP2 as an environmental sensor for cryogenic correlative light and electron microscopy.

Davis Perez1, Peter D Dahlberg2, Jiarui Wang3, Annina M Sartor1, Julia S Borden4, Lucy Shapiro5, W E Moerner1.   

Abstract

Cryogenic correlative light and electron microscopy (cryo-CLEM) seeks to leverage orthogonal information present in two powerful imaging modalities. While recent advances in cryogenic electron microscopy (cryo-EM) allow for the visualization and identification of structures within cells at the nanometer scale, information regarding the cellular environment, such as pH, membrane potential, ionic strength, etc., which influences the observed structures remains absent. Fluorescence microscopy can potentially be used to reveal this information when specific labels, known as fluorescent biosensors, are used, but there has been minimal use of such biosensors in cryo-CLEM to date. Here we demonstrate the applicability of one such biosensor, the fluorescent protein roGFP2, for cryo-CLEM experiments. At room temperature, the ratio of roGFP2 emission brightness when excited at 425 nm or 488 nm is known to report on the local redox potential. When samples containing roGFP2 are rapidly cooled to 77 K in a manner compatible with cryo-EM, the ratio of excitation peaks remains a faithful indicator of the redox potential at the time of freezing. Using purified protein in different oxidizing/reducing environments, we generate a calibration curve which can be used to analyze in situ measurements. As a proof-of-principle demonstration, we investigate the oxidation/reduction state within vitrified Caulobacter crescentus cells. The polar organizing protein Z (PopZ) localizes to the polar regions of C. crescentus where it is known to form a distinct microdomain. By expressing an inducible roGFP2-PopZ fusion we visualize individual microdomains in the context of their redox environment.
Copyright © 2022 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bacteria; Biosensor; CLEM; Cryogenic electron tomography; Fluorescence microscopy; Oxidation/reduction

Mesh:

Year:  2022        PMID: 35811036      PMCID: PMC9452478          DOI: 10.1016/j.jsb.2022.107881

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   3.234


  28 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  Determination of the in vivo redox potential by one-wavelength spectro-microscopy of roGFP.

Authors:  Sebastian Wierer; Sébastien Peter; Kirstin Elgass; Hans-Georg Mack; Stefan Bieker; Alfred J Meixner; Ulrike Zentgraf; Frank Schleifenbaum
Journal:  Anal Bioanal Chem       Date:  2012-03-21       Impact factor: 4.142

3.  High-aperture cryogenic light microscopy.

Authors:  M A Le Gros; G McDermott; M Uchida; C G Knoechel; C A Larabell
Journal:  J Microsc       Date:  2009-07       Impact factor: 1.758

4.  Multi-scale 3D Cryo-Correlative Microscopy for Vitrified Cells.

Authors:  Gong-Her Wu; Patrick G Mitchell; Jesus G Galaz-Montoya; Corey W Hecksel; Emily M Sontag; Vimal Gangadharan; Jeffrey Marshman; David Mankus; Margaret E Bisher; Abigail K R Lytton-Jean; Judith Frydman; Kirk Czymmek; Wah Chiu
Journal:  Structure       Date:  2020-08-18       Impact factor: 5.006

Review 5.  Genetically Encoded Fluorescent Biosensors Illuminate the Spatiotemporal Regulation of Signaling Networks.

Authors:  Eric C Greenwald; Sohum Mehta; Jin Zhang
Journal:  Chem Rev       Date:  2018-12-14       Impact factor: 60.622

6.  Caulobacter PopZ forms a polar subdomain dictating sequential changes in pole composition and function.

Authors:  Grant R Bowman; Luis R Comolli; Guido M Gaietta; Michael Fero; Sun-Hae Hong; Ying Jones; Julie H Lee; Kenneth H Downing; Mark H Ellisman; Harley H McAdams; Lucy Shapiro
Journal:  Mol Microbiol       Date:  2010-02-10       Impact factor: 3.501

7.  A cell cycle-controlled redox switch regulates the topoisomerase IV activity.

Authors:  Sharath Narayanan; Balaganesh Janakiraman; Lokesh Kumar; Sunish Kumar Radhakrishnan
Journal:  Genes Dev       Date:  2015-06-01       Impact factor: 11.361

8.  Correlated cryogenic photoactivated localization microscopy and cryo-electron tomography.

Authors:  Yi-Wei Chang; Songye Chen; Elitza I Tocheva; Anke Treuner-Lange; Stephanie Löbach; Lotte Søgaard-Andersen; Grant J Jensen
Journal:  Nat Methods       Date:  2014-05-11       Impact factor: 28.547

9.  Cryogenic single-molecule fluorescence annotations for electron tomography reveal in situ organization of key proteins in Caulobacter.

Authors:  Peter D Dahlberg; Saumya Saurabh; Annina M Sartor; Jiarui Wang; Patrick G Mitchell; Wah Chiu; Lucy Shapiro; W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-08       Impact factor: 11.205

10.  Tricalbins Contribute to Cellular Lipid Flux and Form Curved ER-PM Contacts that Are Bridged by Rod-Shaped Structures.

Authors:  Patrick C Hoffmann; Tanmay A M Bharat; Michael R Wozny; Jerome Boulanger; Elizabeth A Miller; Wanda Kukulski
Journal:  Dev Cell       Date:  2019-11-18       Impact factor: 12.270

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