Literature DB >> 35803216

The Cupid shuffle: Do enhancers prefer specific promoters?

Hsiao-Lin V Wang1, Victor G Corces2.   

Abstract

Two recent reports (Martinez-Ara et al., 2022; Bergman et al., 2022) explore the compatibility between enhancers and promoters and find that enhancers preferentially activate promoters with low intrinsic activity rather than favoring housekeeping or cell-type-specific promoters.
Copyright © 2022 Elsevier Inc. All rights reserved.

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Year:  2022        PMID： 35803216      PMCID： PMC9528888          DOI： 10.1016/j.molcel.2022.06.014

Source DB:  PubMed          Journal:  Mol Cell        ISSN： 1097-2765            Impact factor:   19.328


  9 in total

1.  Promoter-proximal tethering elements regulate enhancer-promoter specificity in the Drosophila Antennapedia complex.

Authors:  Vincent C Calhoun; Angelike Stathopoulos; Michael Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-01       Impact factor: 11.205

2.  A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers.

Authors:  Laila El Khattabi; Haiyan Zhao; Jens Kalchschmidt; Natalie Young; Seolkyoung Jung; Peter Van Blerkom; Philippe Kieffer-Kwon; Kyong-Rim Kieffer-Kwon; Solji Park; Xiang Wang; Jordan Krebs; Subhash Tripathi; Noboru Sakabe; Débora R Sobreira; Su-Chen Huang; Suhas S P Rao; Nathanael Pruett; Daniel Chauss; Erica Sadler; Andrea Lopez; Marcelo A Nóbrega; Erez Lieberman Aiden; Francisco J Asturias; Rafael Casellas
Journal:  Cell       Date:  2019-08-08       Impact factor: 41.582

3.  YY1 Is a Structural Regulator of Enhancer-Promoter Loops.

Authors:  Abraham S Weintraub; Charles H Li; Alicia V Zamudio; Alla A Sigova; Nancy M Hannett; Daniel S Day; Brian J Abraham; Malkiel A Cohen; Behnam Nabet; Dennis L Buckley; Yang Eric Guo; Denes Hnisz; Rudolf Jaenisch; James E Bradner; Nathanael S Gray; Richard A Young
Journal:  Cell       Date:  2017-12-07       Impact factor: 41.582

4.  Compatibility rules of human enhancer and promoter sequences.

Authors:  Drew T Bergman; Thouis R Jones; Vincent Liu; Judhajeet Ray; Evelyn Jagoda; Layla Siraj; Helen Y Kang; Joseph Nasser; Michael Kane; Antonio Rios; Tung H Nguyen; Sharon R Grossman; Charles P Fulco; Eric S Lander; Jesse M Engreitz
Journal:  Nature       Date:  2022-05-20       Impact factor: 69.504

5.  Systematic analysis of intrinsic enhancer-promoter compatibility in the mouse genome.

Authors:  Miguel Martinez-Ara; Federico Comoglio; Joris van Arensbergen; Bas van Steensel
Journal:  Mol Cell       Date:  2022-04-29       Impact factor: 19.328

6.  Altered histone H1 stoichiometry and an absence of nucleosome positioning on transfected DNA.

Authors:  Pratibha B Hebbar; Trevor K Archer
Journal:  J Biol Chem       Date:  2007-12-22       Impact factor: 5.157

Review 7.  In search of the determinants of enhancer-promoter interaction specificity.

Authors:  Joris van Arensbergen; Bas van Steensel; Harmen J Bussemaker
Journal:  Trends Cell Biol       Date:  2014-08-24       Impact factor: 20.808

8.  A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity.

Authors:  Fumitaka Inoue; Martin Kircher; Beth Martin; Gregory M Cooper; Daniela M Witten; Michael T McManus; Nadav Ahituv; Jay Shendure
Journal:  Genome Res       Date:  2016-11-09       Impact factor: 9.043

9.  Activity-by-contact model of enhancer-promoter regulation from thousands of CRISPR perturbations.

Authors:  Charles P Fulco; Joseph Nasser; Thouis R Jones; Glen Munson; Drew T Bergman; Vidya Subramanian; Sharon R Grossman; Rockwell Anyoha; Benjamin R Doughty; Tejal A Patwardhan; Tung H Nguyen; Michael Kane; Elizabeth M Perez; Neva C Durand; Caleb A Lareau; Elena K Stamenova; Erez Lieberman Aiden; Eric S Lander; Jesse M Engreitz
Journal:  Nat Genet       Date:  2019-11-29       Impact factor: 38.330
  9 in total
  1 in total

Review 1.  Enhancer-Mediated Formation of Nuclear Transcription Initiation Domains.

Authors:  Matthew D Gibbons; Yu Fang; Austin P Spicola; Niko Linzer; Stephen M Jones; Breanna R Johnson; Lu Li; Mingyi Xie; Jörg Bungert
Journal:  Int J Mol Sci       Date:  2022-08-18       Impact factor: 6.208
  1 in total

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