Literature DB >> 35801895

CondiS Web App: Imputation of Censored Lifetimes for Machine Learning-Based Survival Analysis.

Yizhuo Wang1, Christopher R Flowers2, Ziyi Li1, Xuelin Huang1.   

Abstract

SUMMARY: In the era of big data, machine learning techniques are widely applied to every area in biomedical research including survival analysis. It's well recognized that censoring, which is a common missing issue in survival time data, hampers the direct usage of these machine learning techniques. Here we present CondiS, a web toolkit with graphical user interface to help impute the survival times for censored observations and predict the survival times for future enrolled patients. CondiS imputes a censored survival time based on its distribution conditional on its observed part. When covariates are available, CondiS-X incorporates this information to further increase the imputation accuracy. Users can also upload data of newly enrolled patients and predict their survival times. As the first web-app tool with an imputation function for censored lifetime data, CondiS web can facilitate conducting survival analysis with machine learning approaches. AVAILABILITY: CondiS is an open-source application implemented with Shiny in R, available free at: https://biostatistics.mdanderson.org/shinyapps/CondiS/.
© The Author(s) (2022). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Year:  2022        PMID: 35801895      PMCID: PMC9438949          DOI: 10.1093/bioinformatics/btac461

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.931


  7 in total

1.  Feature selection in Bayesian classifiers for the prognosis of survival of cirrhotic patients treated with TIPS.

Authors:  Rosa Blanco; Iñaki Inza; Marisa Merino; Jorge Quiroga; Pedro Larrañaga
Journal:  J Biomed Inform       Date:  2005-06-04       Impact factor: 6.317

2.  Impact of censoring on learning Bayesian networks in survival modelling.

Authors:  Ivan Stajduhar; Bojana Dalbelo-Basić; Nikola Bogunović
Journal:  Artif Intell Med       Date:  2009-10-14       Impact factor: 5.326

3.  Experiments to determine whether recursive partitioning (CART) or an artificial neural network overcomes theoretical limitations of Cox proportional hazards regression.

Authors:  M W Kattan; K R Hess; J R Beck
Journal:  Comput Biomed Res       Date:  1998-10

4.  Predicting survival in malignant skin melanoma using Bayesian networks automatically induced by genetic algorithms. An empirical comparison between different approaches.

Authors:  B Sierra; P Larrañaga
Journal:  Artif Intell Med       Date:  1998 Sep-Oct       Impact factor: 5.326

5.  Evaluating the yield of medical tests.

Authors:  F E Harrell; R M Califf; D B Pryor; K L Lee; R A Rosati
Journal:  JAMA       Date:  1982-05-14       Impact factor: 56.272

6.  CondiS: A conditional survival distribution-based method for censored data imputation overcoming the hurdle in machine learning-based survival analysis.

Authors:  Yizhuo Wang; Christopher R Flowers; Ziyi Li; Xuelin Huang
Journal:  J Biomed Inform       Date:  2022-06-09       Impact factor: 8.000

7.  Survival analysis in clinical trials: Basics and must know areas.

Authors:  Ritesh Singh; Keshab Mukhopadhyay
Journal:  Perspect Clin Res       Date:  2011-10
  7 in total

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