Literature DB >> 35799069

Insights into the xylan degradation system of Cellulomonas sp. B6: biochemical characterization of rCsXyn10A and rCsAbf62A.

Mercedes María Garrido1,2, Florencia Elizabeth Piccinni1,2, Malena Landoni3, María Jesús Peña4, Juliana Topalian1, Alicia Couto3, Sonia Alejandra Wirth2, Breeanna Rae Urbanowicz5, Eleonora Campos6.   

Abstract

Valorization of the hemicellulose fraction of plant biomass is crucial for the sustainability of lignocellulosic biorefineries. The Cellulomonas genus comprises Gram-positive Actinobacteria that degrade cellulose and other polysaccharides by secreting a complex array of enzymes. In this work, we studied the specificity and synergy of two enzymes, CsXyn10A and CsAbf62A, which were identified as highly abundant in the extracellular proteome of Cellulomonas sp. B6 when grown on wheat bran. To explore their potential for bioprocessing, the recombinant enzymes were expressed and their activities were thoroughly characterized. rCsXyn10A is a GH10 endo-xylanase (EC 3.2.1.8), active across a broad pH range (5 to 9), at temperatures up to 55 °C. rCsAbf62A is an α-L-arabinofuranosidase (ABF) (EC 3.2.1.55) that specifically removes α-1,2 and α-1,3-L-arabinosyl substituents from arabino-xylo-oligosaccharides (AXOS), xylan, and arabinan backbones, but it cannot act on double-substituted residues. It also has activity on pNPA. No differences were observed regarding activity when CsAbf62A was expressed with its appended CBM13 module or only the catalytic domain. The amount of xylobiose released from either wheat arabinoxylan or arabino-xylo-oligosaccharides increased significantly when rCsXyn10A was supplemented with rCsAbf62A, indicating that the removal of arabinosyl residues by rCsAbf62A improved rCsXyn10A accessibility to β-1,4-xylose linkages, but no synergism was observed in the deconstruction of wheat bran. These results contribute to designing tailor-made, substrate-specific, enzymatic cocktails for xylan valorization. KEY POINTS: • rCsAbf62A removes α-1,2 and α-1,3-L-arabinosyl substituents from arabino-xylo-oligosaccharides, xylan, and arabinan backbones. • The appended CBM13 of rCsAbf62A did not affect the specific activity of the enzyme. • Supplementation of rCsXyn10A with rCsAbf62A improves the degradation of AXOS and xylan.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Arabinofuranosidases; Cellulomonas; GH10; GH62; Hemicellulose; Xylanases

Mesh:

Substances:

Year:  2022        PMID: 35799069     DOI: 10.1007/s00253-022-12061-3

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   5.560


  31 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  Purification and characterization of a GH43 β-xylosidase from Enterobacter sp. identified and cloned from forest soil bacteria.

Authors:  Eleonora Campos; María José Negro Alvarez; Gonzalo Sabarís di Lorenzo; Sergio Gonzalez; Marcela Rorig; Paola Talia; Daniel H Grasso; Felicia Sáez; Paloma Manzanares Secades; Mercedes Ballesteros Perdices; Angel A Cataldi
Journal:  Microbiol Res       Date:  2013-07-07       Impact factor: 5.415

4.  1H Diffusion-Ordered Nuclear Magnetic Resonance Spectroscopic Analysis of Water-Extractable Arabinoxylan in Wheat (Triticum aestivum L.) Flour.

Authors:  Wannes L De Man; Ewoud Vaneeckhaute; Niels De Brier; Arno G B Wouters; Johan A Martens; Eric Breynaert; Jan A Delcour
Journal:  J Agric Food Chem       Date:  2021-03-29       Impact factor: 5.279

Review 5.  β-xylosidases and α-L-arabinofuranosidases: accessory enzymes for arabinoxylan degradation.

Authors:  Stijn Lagaert; Annick Pollet; Christophe M Courtin; Guido Volckaert
Journal:  Biotechnol Adv       Date:  2013-11-15       Impact factor: 14.227

6.  Two β-xylanases from Aspergillus terreus: characterization and influence of phenolic compounds on xylanase activity.

Authors:  Leonora Rios de Souza Moreira; Marcela de Carvalho Campos; Pedro Henrique Vieira Martins de Siqueira; Luciano Paulino Silva; Carlos André Ornelas Ricart; Pedro Alves Martins; Rayner Myr Lautherjung Queiroz; Edivaldo Ximenes Ferreira Filho
Journal:  Fungal Genet Biol       Date:  2013-07-25       Impact factor: 3.495

7.  Functional and structural diversity in GH62 α-L-arabinofuranosidases from the thermophilic fungus Scytalidium thermophilum.

Authors:  Amrit Pal Kaur; Boguslaw P Nocek; Xiaohui Xu; Michael J Lowden; Juan Francisco Leyva; Peter J Stogios; Hong Cui; Rosa Di Leo; Justin Powlowski; Adrian Tsang; Alexei Savchenko
Journal:  Microb Biotechnol       Date:  2014-09-29       Impact factor: 5.813

8.  The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans.

Authors:  Camila Ramos Dos Santos; Priscila Oliveira de Giuseppe; Flávio Henrique Moreira de Souza; Letícia Maria Zanphorlin; Mariane Noronha Domingues; Renan Augusto Siqueira Pirolla; Rodrigo Vargas Honorato; Celisa Caldana Costa Tonoli; Mariana Abrahão Bueno de Morais; Vanesa Peixoto de Matos Martins; Lucas Miranda Fonseca; Fernanda Büchli; Paulo Sergio Lopes de Oliveira; Fábio Cesar Gozzo; Mário Tyago Murakami
Journal:  Biotechnol Biofuels       Date:  2018-08-11       Impact factor: 6.040

9.  The carbohydrate-active enzyme database: functions and literature.

Authors:  Elodie Drula; Marie-Line Garron; Suzan Dogan; Vincent Lombard; Bernard Henrissat; Nicolas Terrapon
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

10.  Characterisation of novel biomass degradation enzymes from the genome of Cellulomonas fimi.

Authors:  Steven D Kane; Christopher E French
Journal:  Enzyme Microb Technol       Date:  2018-02-15       Impact factor: 3.493

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