| Literature DB >> 35795205 |
Shangdan Xie1, Mengying Jiang1, Hejing Liu1, Fang Xue1, Xin Chen1, Xueqiong Zhu1.
Abstract
Background: Uterine leiomyomas (ULs) is the most common gynecological benign tumor in women. Our previous study showed that the phenomenon of vitamin D deficiency existed in patients with ULs. However, the association of vitamin D anabolism-related gene polymorphisms and susceptibility to ULs was unclear.Entities:
Keywords: Dhcr7; NADSYN1; single nucleotide polymorphisms; uterine leiomyomas; vitamin D
Year: 2022 PMID: 35795205 PMCID: PMC9251306 DOI: 10.3389/fgene.2022.844684
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.772
The sequencing results of 33 SNPs of DHCR7 and NADSYN1 in 110 ULs and 110healthy controls.
| Number | SNP | Position | Alleles | Gene | Case (N = 110) | Control (N = 110) | HWE |
| ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0/0 | 0/1 | 1/1 | 0/0 | 0/1 | 1/1 | |||||||
| 1 | rs199506852 | chr11: 71146468 | G > A | DHCR7 | 109 | 1 | 0 | 109 | 1 | 0 | 0.962 | 1.000 |
| 2 | rs781687341 | chr11: 71146521 | C > T | DHCR7 | 110 | 0 | 0 | 110 | 0 | 0 | NA | NA |
| 3 | NA | chr11: 71146535 | G > T | DHCR7 | 110 | 0 | 0 | 109 | 1 | 0 | 0.962 | 1.000 |
| 4 | rs909217 | chr11: 71146577 | G > A | DHCR7 | 29 | 68 | 13 | 45 | 55 | 10 | 0.237 | 0.073 |
| 5 | rs544442568 | chr11: 71146681 | G > A | DHCR7 | 110 | 0 | 0 | 109 | 1 | 0 | 0.962 | 1.000 |
| 6 | rs760241 | chr11: 71146691 | A > G | DHCR7 | 1 | 41 | 68 | 6 | 37 | 67 | 0.690 | 0.151 |
| 7 | NA | chr11: 71146810 | C > G | DHCR7 | 109 | 1 | 0 | 110 | 0 | 0 | NA | 1.000 |
| 8 | rs72954276 | chr11: 71146837 | C > T | DHCR7 | 110 | 0 | 0 | 109 | 1 | 0 | 0.962 | 1.000 |
| 9 | rs75225632 | chr11: 71146841 | G > A | DHCR7 | 98 | 12 | 0 | 102 | 8 | 0 | 0.692 | 0.483 |
| 10 | rs145901607 | chr11: 71146862 | G > A | DHCR7 | 106 | 4 | 0 | 100 | 9 | 1 | 0.146 | 0.212 |
| 11 | rs1792268 | chr11: 71146952 | G > A | DHCR7 | 1 | 41 | 68 | 6 | 37 | 67 | 0.765 | 0.151 |
| 12 | rs143811340 | chr11: 71147010 | G > A | DHCR7 | 109 | 1 | 0 | 110 | 0 | 0 | NA | 1.000 |
| 13 | rs770925697 | chr11: 71149986 | G > A | DHCR7 | 110 | 0 | 0 | 110 | 0 | 0 | NA | NA |
| 14 | rs949177 | chr11: 71152461 | A > G | DHCR7 | 0 | 30 | 80 | 4 | 34 | 72 | 0.969 | 0.107 |
| 15 | NA | chr11: 71153351 | C > T | DHCR7 | 109 | 1 | 0 | 110 | 0 | 0 | NA | 1.000 |
| 16 | rs1790334 | chr11: 71155153 | A > G | DHCR7 | 0 | 30 | 80 | 4 | 34 | 72 | 0.996 | 0.097 |
| 17 | rs1044482 | chr11: 71155171 | C > T | DHCR7 | 29 | 69 | 12 | 51 | 51 | 8 | 0.321 |
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| 18 | NA | chr11: 71155278 | A > G | DHCR7 | 110 | 0 | 0 | 109 | 1 | 0 | 0.962 | 1.000 |
| 19 | rs2276360 | chr11: 71169547 | G > C | NADSYN1 | 27 | 70 | 13 | 46 | 54 | 10 | 0.296 |
|
| 20 | rs7950441 | chr11: 71184678 | A > C | NADSYN1 | 0 | 0 | 110 | 0 | 0 | 110 | NA | NA |
| 21 | rs2276354 | chr11: 71185479 | T > C | NADSYN1 | 0 | 29 | 81 | 3 | 34 | 73 | 0.683 | 0.149 |
| 22 | rs2186778 | chr11: 71185518 | T > C | NADSYN1 | 0 | 29 | 81 | 4 | 33 | 73 | 0.910 | 0.097 |
| 23 | rs3819215 | chr11: 71185582 | G > A | NADSYN1 | 99 | 11 | 0 | 102 | 8 | 0 | 0.692 | 0.632 |
| 24 | NA | chr11: 71188468 | T > C | NADSYN1 | 110 | 0 | 0 | 109 | 1 | 0 | 0.962 | 1.000 |
| 25 | rs2276353 | chr11: 71189436 | T > C | NADSYN1 | 0 | 29 | 81 | 3 | 34 | 73 | 0.683 | 0.149 |
| 26 | rs149812928 | chr11: 71189473 | C > T | NADSYN1 | 110 | 0 | 0 | 109 | 1 | 0 | 0.962 | 1.000 |
| 27 | rs138969547 | chr11: 71191891 | G > A | NADSYN1 | 110 | 0 | 0 | 108 | 2 | 0 | 0.923 | 0.498 |
| 28 | rs147585323 | chr11: 71193059 | G > A | NADSYN1 | 109 | 1 | 0 | 110 | 0 | 0 | NA | 1.000 |
| 29 | rs184748544 | chr11: 71193951 | C > A | NADSYN1 | 109 | 1 | 0 | 110 | 0 | 0 | NA | 1.000 |
| 30 | rs765545198 | chr11: 71194033 | G > A | NADSYN1 | 109 | 1 | 0 | 110 | 0 | 0 | NA | 1.000 |
| 31 | rs182956982 | chr11: 71202892 | G > A | NADSYN1 | 109 | 1 | 0 | 110 | 0 | 0 | NA | 1.000 |
| 32 | rs371669981 | chr11: 71209469 | C > T | NADSYN1 | 109 | 1 | 0 | 110 | 0 | 0 | NA | 1.000 |
| 33 | rs12282060 | chr11: 71212387 | G > A | NADSYN1 | 110 | 0 | 0 | 109 | 1 | 0 | 0.962 | 1.000 |
0/0 was homozygote without mutation; 0/1 was heterozygote with 1 mutation; 1/1 was homozygote with 2 mutations.
HWE, Hardy-Weinberg equilibrium; NA, not applicable.
The information of selected variables of validated ULs patients and controls.
| Variables | Case (N = 340) | Control (N = 340) |
| |||||
|---|---|---|---|---|---|---|---|---|
| Medium ±SD | Medium ±SD | |||||||
| Age | 39.90 ± 4.80 | 39.99 ± 4.38 | 0.770 | |||||
| BMI | 22.46 ± 2.93 | 21.93 ± 2.61 | 0.282 | |||||
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| WBC | 5.72 | 4.85 | 6.84 | 5.72 | 4.81 | 6.72 | −0.005 | 0.996 |
| RBC | 4.37 | 4.15 | 4.61 | 4.40 | 4.19 | 4.62 | −1.052 | 0.293 |
| ALT | 13.00 | 11.00 | 17.00 | 14.00 | 11.00 | 19.00 | −1.645 | 0.100 |
| AST | 17.00 | 15.00 | 20.00 | 18.00 | 15.00 | 20.00 | −0.697 | 0.486 |
| Total protein | 73.50 | 71.20 | 76.20 | 73.70 | 70.90 | 76.40 | −0.667 | 0.505 |
| Carbamide | 4.40 | 3.80 | 5.20 | 4.50 | 3.90 | 5.10 | −1.312 | 0.190 |
| Uric acid | 269.00 | 231.00 | 313.50 | 277.00 | 240.00 | 310.00 | −1.039 | 0.299 |
| Triglyceride | 0.91 | 0.69 | 1.30 | 0.98 | 0.73 | 1.33 | −0.963 | 0.335 |
| Total cholesterol | 4.63 | 4.06 | 5.07 | 4.62 | 4.19 | 5.09 | −0.487 | 0.627 |
BMI, body mass index; WBC, white blood cell; RBC, red blood cell; ALT, alanine aminotransferase; AST, aspartate aminotransferase.
Normally distributed data is represented by Medium ± SD, non-normally distributed data is represented by quartile, and Z is the statistical value of nonparametric test.
Association between the two SNPs and ULs by logistic regression analyses.
| Allele | Case (N = 340) | Control (N = 340) | Crude OR (95% CI) |
| Adjusted OR (95% CI) |
|
|---|---|---|---|---|---|---|
| DHCR7 rs1044482 C > T | ||||||
| C | 349 (51.32%) | 402 (59.12%) | References | References | ||
| T | 293 (43.09%) | 238 (35.00%) | 1.418 (1.134–1.773) |
| 1.651 (1.251–2.178) |
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| NA | 38 (5.59%) | 40 (5.88%) | NA | NA | ||
| NADSYN1 rs2276360 G > C | ||||||
| G | 325 (47.79%) | 382 (56.18%) | References | References | ||
| C | 253 (37.21%) | 218 (32.06%) | 1.364 (1.080–1.723) |
| 1.430 (1.073–1.906) |
|
| NA | 102 (15.00%) | 80 (11.76%) | NA | NA | ||
| Genotype | Case (N = 340) | Control (N = 340) | Crude OR (95% CI) |
| Adjusted OR (95% CI) |
|
| DHCR7 rs1044482 C > T, HWE = 0.106 | ||||||
| CC | 92 (27.06%) | 133 (39.12%) | References | References | ||
| CT | 165 (48.53%) | 136 (40.00%) | 1.754 (1.237–2.488) |
| 1.967 (1.289–3.001) |
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| TT | 64 (18.82%) | 51 (15.00%) | 1.814 (1.152–2.856) |
| 2.494 (1.389–4.477) |
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| NA | 19 (5.59%) | 20 (5.88%) | NA | NA | ||
| Additive | 1.431 (1.048–1.954) |
| 1.485 (1.016–2.171) |
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| Dominant | 229 (67.35%) | 187 (55.00%) | 1.770 (1.275–2.459) |
| 2.084 (1.396–3.110) |
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| Recessive | 257 (75.59%) | 269 (78.12%) | 1.313 (0.875–1.971) | 0.188 | 1.689 (0.994–2.870) | 0.053 |
| NADSYN1 rs2276360 G > C, HWE = 0.178 | ||||||
| GG | 95 (27.94%) | 127 (37.35%) | References | References | ||
| GC | 135 (39.71%) | 128 (37.65%) | 1.410 (0.984–2.020) | 0.061 | 1.336 (0.864–2.067) | 0.193 |
| CC | 59 (17.35%) | 45 (13.24%) | 1.753 (1.095–2.805) |
| 2.020 (1.121–3.640) |
|
| NA | 51 (15.00%) | 40 (11.76%) | NA | NA | ||
| Additive | 1.178 (0.851–1.631) | 0.324 | 1.079 (0.726–1.606) | 0.706 | ||
| Dominant | 194 (57.06%) | 173 (50.88%) | 1.499 (1.072–2.097) |
| 1.494 (0.993–2.247) | 0.054 |
| Recessive | 230 (67.65%) | 255 (75.00%) | 1.454 (0.949–2.228) | 0.086 | 1.727 (1.008–2.960) |
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| Combined effect of risk genotypes | ||||||
| 0 | 78 (22.94%) | 111 (32.65%) | References | References | ||
| 1 | 19 (5.59%) | 25 (7.35%) | 1.082 (0.557–2.099) | 0.817 | 1.198 (0.529–2.716) | 0.665 |
| 2 | 181 (53.24%) | 151 (44.41%) | 1.706 (1.189–2.448) |
| 1.856 (1.197–2.877) |
|
| NA | 62 (18.24%) | 53 (15.59%) | NA | NA | ||
Adjusted for age and BMI.
Risk genotype was with DHCR7 rs1044482 CT/TT, and NADSYN1 rs2276360 GC/CC.
The results were in bold if p value <0.05.
OR, odd ratio; CI, confidence interval; HWE, Hardy-Weinberg equilibrium; NA, not applicable.
Stratification analysis of risk alleles and genotypes with ULs susceptibility.
| Characteristics | rs1044482 (Case/Control) | OR (95%CI) |
| rs2276360 (Case/Control) | OR (95%CI) |
| ||
|---|---|---|---|---|---|---|---|---|
| C | T | G | C | |||||
| Age (year) | ||||||||
| <40 | 190/203 | 140/113 | 1.324 (0.964–1.818) | 0.083 | 175/190 | 117/106 | 1.198 (0.859–1.673) | 0.288 |
| ≥40 | 159/199 | 153/125 | 1.532 (1.118–2.099) |
| 150/192 | 136/112 | 1.554 (1.119–2.160) |
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| BMI | ||||||||
| <18.5 | 15/27 | 11/7 | 2.829 (0.906–8.832) | 0.073 | 14/23 | 10/9 | 1.825 (0.596–5.590) | 0.292 |
| 18.5 ≤ BMI <25.0 | 194/220 | 154/110 | 1.588 (1.163–2.168) |
| 181/207 | 133/105 | 1.449 (1.047–2.004) |
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| 25.0 ≤ BMI <30.0 | 41/31 | 37/21 | 1.332 (0.655–2.710) | 0.429 | 36/27 | 30/23 | 0.978 (0.468–2.045) | 0.953 |
| 30.0 ≤ BMI <40.0 | 1/3 | 3/221 | 9.000 (0.367–220.927) | 0.178 | 0/3 | 0/1 | NA | NA |
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| Age (year) | ||||||||
| <40 | 56/67 | 109/91 | 1.433 (0.913–2.250) | 0.118 | 54/63 | 92/85 | 1.226 (0.684–2.196) | 0.494 |
| ≥40 | 36/66 | 120/96 | 2.292 (1.408–3.729) |
| 41/64 | 102/88 | 1.809 (1.114–2.938) |
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| BMI | ||||||||
| <18.5 | 6/10 | 7/7 | 1.667 (0.388–7.153) | 0.492 | 6/8 | 6/8 | 1.000 (0.224–4.468) | 1.000 |
| 18.5 ≤ BMI <25.0 | 51/78 | 123/87 | 2.162 (1.383–3.382) |
| 54/72 | 103/84 | 1.635 (1.037–2.578) |
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| 25.0 ≤ BMI <30.0 | 10/8 | 29/18 | 1.289 (0.429–3.872) | 0.651 | 10/6 | 23/19 | 0.726 (0.223–2.365) | 0.595 |
| 30.0 ≤ BMI <40.0 | 0/1 | 2/1 | NA | 1.000 | 0/1 | 0/1 | NA | NA |
The results were in bold if p value <0.05.
OR, odd ratio; CI, confidence interval.
The frequency of inferred haplotypes of the two SNPs based on observed genotypes and their association with the risk of ULs.
| rs1044482 | rs2276360 | Case (N = 340) | Control (N = 340) | Crude OR (95% CI) |
| Adjusted OR (95% CI) |
|
|---|---|---|---|---|---|---|---|
| C | G | 231 (41.25%) | 301 (50.50%) | References | References | ||
| C | C | 80 (14.29%) | 77 (12.92%) | 1.456 (1.128–1.880) |
| 1.640 (1.193–2.256) |
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| T | G | 82 (14.64%) | 76 (12.75%) | 1.401 (1.085–1.810) |
| 1.374 (1.009–1.872) |
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| T | C | 167 (29.82%) | 142 (23.83%) | 1.587 (1.297–1.942) |
| 1.851 (1.441–2.379) |
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Adjusted for age and BMI.
The results were in bold if p value <0.05.
OR, odd ratio; CI, confidence interval.