| Literature DB >> 35783621 |
Jiaqi Dai1,2, Ke Li2, Man Huang2, Yang Sun1,2, Hao Liu2, Zongzhe Li1,2, Peng Chen1,2, Hong Wang1, Dongyang Wu2, Yanghui Chen2, Lei Xiao2, Haoran Wei2, Rui Li1,2, Liyuan Peng1, Ting Yu1, Yan Wang1,2, Dao Wen Wang1,2.
Abstract
Objective: ALPK3 is associated with a recessive form of pediatric cardiomyopathy accompanied by musculoskeletal and craniofacial abnormalities. Heterozygous truncating variants in this gene (ALPK3tv) have recently been confirmed as a cause of autosomal dominant hypertrophic cardiomyopathy (HCM). Whether ALPK3 is also implicated in HCM in East Asia and the effect of missense variants in ALPK3 on HCM remains unresolved.Entities:
Keywords: ALPK3; East Asians; heterozygote; hypertrophic cardiomyopathy; missense variant
Year: 2022 PMID: 35783621 PMCID: PMC9240616 DOI: 10.3389/fmed.2022.915649
Source DB: PubMed Journal: Front Med (Lausanne) ISSN: 2296-858X
Baseline comparisons of ALPK3 carriers, sarcomere-positive, and sarcomere-negative patients.
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| Gender = male (%) | 16 (57.1) | 54 (65.9) | 439 (70.7) | 0.408 | 0.126 |
| Age of onset (years) | 53.50 ± 17.21 | 45.17 ± 14.01 | 51.95 ± 14.20 | 0.012 | 0.576 |
| Age at enrollment (years) | 54.00 ± 17.18 | 48.00 ± 13.73 | 53.06 ± 14.17 | 0.064 | 0.733 |
| Family history of HCM (%) | 2 (7.1) | 7 (8.5) | 13 (2.1) | 0.816 | 0.082 |
| Family history of SCD (%) | 0 (0.0) | 2 (2.4) | 3 (0.5) | 0.404 | 0.712 |
| Family history of stroke (%) | 3 (10.7) | 4 (4.9) | 33 (5.3) | 0.275 | 0.222 |
| Smoke (%) | 8 (28.6) | 25 (30.5) | 229 (36.9) | 0.848 | 0.372 |
| Alcohol intake (%) | 3 (10.7) | 19 (23.2) | 158 (25.4) | 0.155 | 0.078 |
| NYHA heart function class (%) | 0.078 | 0.093 | |||
| I | 3 (23.1) | 5 (13.5) | 69 (20.8) | ||
| II | 2 (15.4) | 19 (51.4) | 145 (43.8) | ||
| III/IV | 8 (61.5) | 13 (35.1) | 117 (35.3) | ||
| Episode of syncope (%) | 1 (3.6) | 5 (6.1) | 37 (6.0) | 0.611 | 0.599 |
| QTc (ms) | 459.52 ± 36.63 | 460.90 ± 37.08 | 458.79 ± 42.13 | 0.869 | 0.938 |
| QTc > 450 ms (%) | 16 (59.3) | 44 (61.1) | 331 (55.3) | 0.867 | 0.133 |
| Atrial fibrillation (%) | 7 (25.0) | 19 (23.2) | 77 (12.4) | 0.844 | 0.052 |
| Non-sustained ventricular tachycardia (%) | 3 (10.7) | 20 (24.4) | 52 (8.4) | 0.124 | 0.664 |
| Atrioventricular block (%) | 1 (3.6) | 4 (4.9) | 25 (4.0) | 0.774 | 0.905 |
| Any arrhythmia (%) | 11 (39.3) | 41 (50.0) | 193 (31.1) | 0.327 | 0.36 |
| Non-fatal stroke (%) | 6 (21.4) | 3 (3.7) | 80 (12.9) | 0.003 | 0.192 |
| CAD (%) | 6 (21.4) | 6 (7.3) | 214 (34.5) | 0.039 | 0.154 |
| Diabetes mellitus (%) | 3 (10.7) | 7 (8.5) | 128 (20.6) | 0.729 | 0.202 |
| Max wall thickness (mm) | 19.36 ± 5.09 | 21.15 ± 5.18 | 17.16 ± 3.69 | 0.116 | 0.003 |
| Max wall thickness ≥ 30 mm (%) | 1 (3.6) | 5 (6.1) | 10 (1.6) | 0.611 | 0.432 |
| IVS (mm) | 18.43 ± 5.57 | 20.50 ± 5.76 | 16.78 ± 3.88 | 0.101 | 0.032 |
| LVPW (mm) | 12.11 ± 3.29 | 11.06 ± 2.84 | 12.36 ± 3.05 | 0.109 | 0.664 |
| Apex (mm) | 11.89 ± 4.30 | 11.07 ± 3.32 | 10.84 ± 2.50 | 0.299 | 0.037 |
| LAD (mm) | 39.41 ± 5.63 | 42.00 ± 9.57 | 41.62 ± 7.59 | 0.186 | 0.135 |
| LVEDD (mm) | 46.22 ± 5.53 | 44.37 ± 7.82 | 48.67 ± 8.21 | 0.256 | 0.126 |
| LVEF (%) | 61.33 ± 9.21 | 63.84 ± 11.30 | 57.82 ± 13.23 | 0.299 | 0.172 |
| LVOTG ≥ 30 mm Hg (%) | 8 (28.6) | 30 (36.6) | 178 (28.7) | 0.441 | 0.992 |
| E/A | 12.79 ± 36.66 | 6.49 ± 21.70 | 9.29 ± 28.96 | 0.291 | 0.545 |
| E/E’ | 17.54 ± 7.06 | 16.61 ± 10.35 | 19.33 ± 10.02 | 0.693 | 0.397 |
Values are N (%) or mean ± SD. ALPK3
FIGURE 1Distribution of rare variants in ALPK3. Structural and functional domains of ALPK3 protein showing variant sites identified in study cohort (red), validation cohort (pink), and gnomAD controls (blue). (A) Distribution of rare truncating variants (frameshift and stop-gained). Another two splice site variants, respectively, observed in one HCM case (NM_020778.5: c.4410 + 1G > C) of the validation cohort and one control (NM_020778.5: c.4773-1G > C) were not displayed. (B) Distribution of rare missense variants.
FIGURE 2Gene-based burden tests for rare variants in ALPK3. N_cases: number of carries in cases; N_controls: number of carries in controls; OR: odds ratio; 95% CI: 95% confidence interval.
FIGURE 3Genotype-inferred ALPK3 expression-to-LV trait associations. Center values are the estimated association effect size and error bars indicate 95% confidence interval. Data shown correspond to that in Supplementary Table 7. LV, left ventricle/ventricular; LVEDV, LV end-diastolic volume; LVEDVi, body-surface-area (BSA) indexed LVEDV; LVESV, LV end-systolic volume; LVESVi, BSA indexed LVESV; LVEF, LV ejection fraction; SV, stroke volume; SVi, BSA indexed SV; LVM, LV mass; meanLVwallthickness, mean LV wall thickness. *P < 0.05, **P < 0.01, ***P < 0.001.