Literature DB >> 35775972

ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria.

Morgan Anne Feeney1, Jake Terry Newitt2, Emily Addington1, Lis Algora-Gallardo1, Craig Allan3, Lucas Balis2, Anna S Birke1, Laia Castaño-Espriu1, Louise K Charkoudian4, Rebecca Devine2, Damien Gayrard2, Jacob Hamilton2, Oliver Hennrich5, Paul A Hoskisson1, Molly Keith-Baker1, Joshua G Klein4, Worarat Kruasuwan6, David R Mark1, Yvonne Mast5, Rebecca E McHugh1, Thomas C McLean2, Elmira Mohit1, John T Munnoch1, Jordan Murray7, Katie Noble2, Hiroshi Otani8,9, Jonathan Parra1, Camila F Pereira10, Louisa Perry2, Linamaria Pintor-Escobar11, Leighton Pritchard1, Samuel M M Prudence12, Alicia H Russell13, Jana K Schniete11, Ryan F Seipke14,15, Nelly Sélem-Mojica16, Agustina Undabarrena17, Kristiina Vind18, Gilles P van Wezel19, Barrie Wilkinson2, Sarah F Worsley20, Katherine R Duncan1, Lorena T Fernández-Martínez11, Matthew I Hutchings2.   

Abstract

Actinobacteria is an ancient phylum of Gram-positive bacteria with a characteristic high GC content to their DNA. The ActinoBase Wiki is focused on the filamentous actinobacteria, such as Streptomyces species, and the techniques and growth conditions used to study them. These organisms are studied because of their complex developmental life cycles and diverse specialised metabolism which produces many of the antibiotics currently used in the clinic. ActinoBase is a community effort that provides valuable and freely accessible resources, including protocols and practical information about filamentous actinobacteria. It is aimed at enabling knowledge exchange between members of the international research community working with these fascinating bacteria. ActinoBase is an anchor platform that underpins worldwide efforts to understand the ecology, biology and metabolic potential of these organisms. There are two key differences that set ActinoBase apart from other Wiki-based platforms: [1] ActinoBase is specifically aimed at researchers working on filamentous actinobacteria and is tailored to help users overcome challenges working with these bacteria and [2] it provides a freely accessible resource with global networking opportunities for researchers with a broad range of experience in this field.

Entities:  

Keywords:  BGCs; CRISPR; Streptomyces; actinobacteria; antibiotics; specialised metabolites

Mesh:

Substances:

Year:  2022        PMID: 35775972      PMCID: PMC9455695          DOI: 10.1099/mgen.0.000824

Source DB:  PubMed          Journal:  Microb Genom        ISSN: 2057-5858


  79 in total

Review 1.  Actinomycetes: still a source of novel antibiotics.

Authors:  Olga Genilloud
Journal:  Nat Prod Rep       Date:  2017-10-18       Impact factor: 13.423

2.  PLANT MICROBIOME. Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa.

Authors:  Sarah L Lebeis; Sur Herrera Paredes; Derek S Lundberg; Natalie Breakfield; Jase Gehring; Meredith McDonald; Stephanie Malfatti; Tijana Glavina del Rio; Corbin D Jones; Susannah G Tringe; Jeffery L Dangl
Journal:  Science       Date:  2015-07-16       Impact factor: 47.728

Review 3.  Streptomyces as symbionts: an emerging and widespread theme?

Authors:  Ryan F Seipke; Martin Kaltenpoth; Matthew I Hutchings
Journal:  FEMS Microbiol Rev       Date:  2011-12-02       Impact factor: 16.408

4.  Cyclic Di-GMP phosphodiesterases RmdA and RmdB are involved in regulating colony morphology and development in Streptomyces coelicolor.

Authors:  Travis D Hull; Min-Hyung Ryu; Matthew J Sullivan; Ryan C Johnson; Nikolai T Klena; Robert M Geiger; Mark Gomelsky; Jennifer A Bennett
Journal:  J Bacteriol       Date:  2012-06-29       Impact factor: 3.490

5.  Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions.

Authors:  Grímur Hjörleifsson Eldjárn; Andrew Ramsay; Justin J J van der Hooft; Katherine R Duncan; Sylvia Soldatou; Juho Rousu; Rónán Daly; Joe Wandy; Simon Rogers
Journal:  PLoS Comput Biol       Date:  2021-05-04       Impact factor: 4.475

Review 6.  Microbe Profile: Streptomyces coelicolor: a burlesque of pigments and phenotypes.

Authors:  Justin R Nodwell
Journal:  Microbiology       Date:  2019-08-01       Impact factor: 2.777

7.  A computational framework to explore large-scale biosynthetic diversity.

Authors:  Jorge C Navarro-Muñoz; Nelly Selem-Mojica; Michael W Mullowney; Satria A Kautsar; James H Tryon; Elizabeth I Parkinson; Emmanuel L C De Los Santos; Marley Yeong; Pablo Cruz-Morales; Sahar Abubucker; Arne Roeters; Wouter Lokhorst; Antonio Fernandez-Guerra; Luciana Teresa Dias Cappelini; Anthony W Goering; Regan J Thomson; William W Metcalf; Neil L Kelleher; Francisco Barona-Gomez; Marnix H Medema
Journal:  Nat Chem Biol       Date:  2019-11-25       Impact factor: 15.040

8.  Actinomycetes from Red Sea sponges: sources for chemical and phylogenetic diversity.

Authors:  Usama Ramadan Abdelmohsen; Chen Yang; Hannes Horn; Dina Hajjar; Timothy Ravasi; Ute Hentschel
Journal:  Mar Drugs       Date:  2014-05-12       Impact factor: 5.118

9.  Tetrameric c-di-GMP mediates effective transcription factor dimerization to control Streptomyces development.

Authors:  Natalia Tschowri; Maria A Schumacher; Susan Schlimpert; Naga Babu Chinnam; Kim C Findlay; Richard G Brennan; Mark J Buttner
Journal:  Cell       Date:  2014-08-28       Impact factor: 41.582

10.  Formicamycins, antibacterial polyketides produced by Streptomyces formicae isolated from African Tetraponera plant-ants.

Authors:  Zhiwei Qin; John T Munnoch; Rebecca Devine; Neil A Holmes; Ryan F Seipke; Karl A Wilkinson; Barrie Wilkinson; Matthew I Hutchings
Journal:  Chem Sci       Date:  2017-02-13       Impact factor: 9.969

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