| Literature DB >> 35774273 |
Yali She1,2, Xiaowen Zhao1,3,4, Pingfan Wu1,3,4, Ling Xue1,3, Shengfang Wan1, Lei Zhang1, Changtian Li1, Hui Cai5,6, Yaling Li1,2.
Abstract
Background: Gastric cancer (GC) is the fifth most common malignant tumor and the third leading cause of cancer-related deaths. Because GC has the characteristics of high heterogeneity, unclear mechanism, limited treatment methods, and low five-year survival rate, it is necessary to find the prognostic biomarkers of GC and explore the mechanism of GC.Entities:
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Year: 2022 PMID: 35774273 PMCID: PMC9239809 DOI: 10.1155/2022/7567447
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.246
Detailed information of the four GEO datasets.
| Dataset | Platform | Number of samples (normal/tumor) |
|---|---|---|
| GSE19826 | GPL570 | 24 (12/12) |
| GSE118916 | GPL15207 | 30 (15/15) |
| GSE79973 | GPL570 | 20 (10/10) |
| GSE66229 | GPL570 | 400 (100/300) |
Figure 1(a) Biological processes (BP) in GO analysis of overlapping DEGs. (b) Cell components (CC) in GO analysis of overlapping DEGs. (c) Molecular function (MF) in GO analysis of overlapping DEGs. (d) KEGG pathway analysis of overlapping DEGs.
Figure 2Protein-protein interaction network constructed with overlapping 356 DEGs. (a) PPI network is composed of 117 nodes. (b) The most closely connected module was constructed via MCODE. The black line represents the interaction relationship. The higher the degree, the darker the node.
Survival analysis results of 16 genes in the module.
| Gene | HR | 95% CI |
|
|---|---|---|---|
| COL10A1 | 1.569 | 1.099-2.240 | 0.013 |
| COL6A5 | 1.058 | 0.742-1.508 | 0.756 |
| SERPINH1 | 1.081 | 0.758-1.541 | 0.668 |
| COL5A2 | 1.607 | 1.126-2.294 | 0.009 |
| THBS2 | 1.273 | 0.893-1.815 | 0.182 |
| COL5A1 | 1.489 | 1.043-2.125 | 0.028 |
| BGN | 1.246 | 0.874-1.777 | 0.224 |
| COL4A1 | 1.665 | 1.167-2.375 | 0.005 |
| COL3A1 | 1.426 | 0.999-2.036 | 0.049 |
| COL11A1 | 1.245 | 0.873-1.776 | 0.225 |
| COL12A1 | 1.555 | 1.090-2.218 | 0.015 |
| SPARC | 1.659 | 1.162-2.370 | 0.005 |
| COL1A2 | 1.309 | 0.917-1.868 | 0.135 |
| SPP1 | 1.515 | 1.060-2.164 | 0.021 |
| COL8A1 | 1.637 | 1.146-2.339 | 0.006 |
| COL1A1 | 1.330 | 0.931-1.900 | 0.110 |
Figure 3Clinical pathological characteristics of included GC patients.
The expression of COL8A1 in STAD and normal gastric tissues.
| COL8A1 | Total | (-) | (+) | (++) | (+++) |
|
|
|---|---|---|---|---|---|---|---|
| STAD | 119 | 35 | 47 | 29 | 8 | ||
| Normal | 40 | 23 | 8 | 7 | 2 | 8.0 | 0.045 |
Figure 4Validation in collected clinical samples. (a) COL8A1 was negatively expressed in normal gastric tissues and positively expressed in gastric adenocarcinoma tissues. (b) The results of survival analysis showed that the high expression of COL8A1 was related to the poor prognosis of GC patients. HR: hazard ratio; 95% CI: 95% confidence interval. (c) E-cadherin was positively expressed in normal gastric tissues and negatively expressed in gastric adenocarcinoma tissues. (d) Vimentin was negatively expressed in normal gastric tissues and positively expressed in gastric adenocarcinoma tissues. (e) The combined prognostic analysis of COL8A1 and E-cadherin. (f) The combined prognostic analysis of COL8A1 and vimentin.
The relationship between the expression of COL8A1, E-cadherin, and vimentin in STAD.
| Total | COL8A1 | COL8A1 | COL8A1 | COL8A1 |
|
| ||
|---|---|---|---|---|---|---|---|---|
| E-cadherin | (-) | 81 | 17 | 36 | 23 | 7 | -0.275 | 0.002 |
| Vimentin | (-) | 51 | 22 | 20 | 8 | 1 | 0.309 | 0.001 |
Figure 5GSEA analysis results of the first six gene sets. The highest point of the curve was the highest point of the enrichment score (ES).
The relationship between the expression of COL8A1 and clinicopathological characteristics.
| COL8A1 | Total | Negative | Positive |
|
|---|---|---|---|---|
|
| 0.905 | |||
| Age < 50 | 23 (19.3%) | 7 (20.0%) | 16 (19.0%) | |
| Age ≥ 50 | 96 (80.7%) | 28 (80.0%) | 68 (81.0%) | |
|
| 0.692 | |||
| Female | 18 (15.1%) | 6 (17.1%) | 12 (14.3%) | |
| Male | 101 (84.9%) | 29 (82.9%) | 72 (85.7%) | |
|
| 0.922 | |||
| Poorly | 37 (31.1%) | 11 (31.4%) | 26 (31.0%) | |
| Moderately | 78 (65.5%) | 23 (65.7%) | 55 (65.5%) | |
| Well | 4 (3.4%) | 1 (2.9%) | 3 (3.6%) | |
|
| ||||
| I | 8 (6.7%) | 4 (11.4%) | 4 (4.8%) | 0.143 |
| II | 29 (24.4%) | 10 (28.6%) | 19 (22.6%) | |
| III | 64 (53.8%) | 17 (48.6%) | 47 (56.0%) | |
| IV | 18 (15.1%) | 4 (11.4%) | 14 (16.7%) | |
|
| ||||
| T1 | 1 (0.8%) | 1 (2.9%) | 0 (0%) | 0.035 |
| T2 | 13 (10.9%) | 6 (17.1%) | 7 (8.3%) | |
| T3 | 49 (41.2%) | 16 (45.7%) | 33 (39.3%) | |
| T4 | 56 (47.1%) | 12 (34.3%) | 44 (52.4%) | |
|
| ||||
| N0 | 29 (24.4%) | 10 (28.6%) | 19 (22.6%) | 0.030 |
| N1 | 24 (20.2%) | 11 (31.4%) | 13 (15.5%) | |
| N2 | 36 (30.3%) | 11 (31.4%) | 25 (29.8%) | |
| N3 | 30 (25.2%) | 3 (8.6%) | 27 (32.1%) | |
|
| 0.565 | |||
| M0 | 102 (85.7%) | 31 (88.6%) | 71 (84.5%) | |
| M1 | 17 (14.3%) | 4 (11.4%) | 13 (15.5%) |