| Literature DB >> 35769993 |
Lili Yu1, Yajing Zhou1, Lijuan Wang1, Xuan Zhou1, Jing Sun1, Jiarui Xiao1, Xiaolin Xu1, Susanna C Larsson2,3, Shuai Yuan1,2, Xue Li1,4.
Abstract
Growth differentiation factor 15 (GDF-15) levels have been revealed as a robust biomarker for metformin use. We conducted Mendelian randomization (MR) analysis to explore the association between GDF-15 and gallstone disease to inform potential therapeutic effects targeting GDF-15. Four genetic variants associated with GDF-15 levels at p < 5 × 10-8 were selected as instrumental variables from a genome-wide association meta-analysis including 21,758 individuals. Two-sample MR analysis was conducted using summary-level data from UK Biobank (10,520 gallstone cases and 350,674 controls) and FinnGen consortium (19,023 gallstone cases and 195,144 controls). Polygenic risk score analysis using individual-level data in UK biobank was performed to complement the MR findings by examining the non-linearity of the association. Diabetic complications were taken as positive controls to validate the therapeutic effect of targeting GDF-15. Linear and nonlinear associations between genetically predicted GDF-15 levels and gallstones were estimated with stratification by the diabetic status. In the two-sample MR analysis, the odds ratio (OR) of gallstones was 1.09 (95% confidence interval (CI), 1.03-1.15; p = 0.001) for one standard deviation increase in genetically predicted GDF-15 levels in the meta-analysis of two datasets. Polygenic risk score analysis found this association to be U-shaped (p = 0.037). The observed association was predominantly seen in nondiabetic population (OR = 1.11, 95% CI: 1.01-1.21; p = 0.003). An inverse association between genetically predicted GDF-15 levels and diabetic complications (OR = 0.77, 95% CI: 0.62-0.96; p = 0.023) was observed, validating the potential therapeutic effects of targeting GDF-15 levels. This MR study indicates that the increased risk of gallstone disease should be taken into account when considering GDF-15 as a therapeutic target for diabetic complications.Entities:
Keywords: Mendelian randomization; diabetic complication; gallstones; growth differentiation factor 15; metformin
Year: 2022 PMID: 35769993 PMCID: PMC9234303 DOI: 10.3389/fgene.2022.814457
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.772
FIGURE 1Schematic representation of the study design. MR, Mendelian randomization; IVW, inverse variance weighted; GRS, weighted genetic risk score; LD, linkage disequilibrium; GWAS, genome-wide association study.
Genetic instruments for growth differentiation factor 15 levels and their associations with gallstones.
| SNP | Chr | Position | Gene | EA | NEA | EAF | GDF-15 | Gallstones in UKB | Gallstones in FinnGen | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Beta | SE |
| Beta | SE |
| Beta | SE |
| |||||||
| rs2517481 | 6 | 31043931 |
| G | C | 0.59 | 0.059 | 0.010 | 1.7e-08 | 0.001 | 0.014 | 0.975 | 0.001 | 0.014 | 0.971 |
| rs1227734 | 19 | 18501034 |
| T | C | 0.14 | 0.370 | 0.013 | 9.9e-177 | 0.066 | 0.020 | 6.8e-4 | 0.025 | 0.023 | 0.281 |
| rs60164552 | 19 | 18488285 |
| G | C | 0.92 | 0.160 | 0.017 | 7.9e-22 | −0.026 | 0.027 | 0.337 | 0.032 | 0.024 | 0.175 |
| rs112253475 | 19 | 18841757 |
| A | G | 0.98 | 0.270 | 0.044 | 6.5e-10 | −0.015 | 0.062 | 0.806 | 0.006 | 0.038 | 0.871 |
Chr, chromosome; EA, effect allele; EAF, effect allele frequency; NEA, non-effect allele; SE, standard error; SNP, single nucleotide polymorphism; UKB, UK Biobank. The position was based on human genome 19 (hg19).
Rs112253475 was unavailable in FinnGen and proxied by rs118170439 (r 2 = 0.8).
FIGURE 2Association of genetically predicted growth differentiation factor 15 levels with gallstone disease risk in Mendelian randomization analysis. CI, confidence interval; IVW, inverse variance weighted; OR, odds ratio; SNPs, single nucleotide polymorphisms; UKBB, UK Biobank. Estimates of analyses based on all SNPs were derived from the random-effects inverse-variance weighted method.
Association of genetically predicted growth differentiation factor 15 levels with gallstone disease risk in Mendelian randomization sensitivity analysis.
| Source | Method | OR | 95% CI |
|
|---|---|---|---|---|
| UK Biobank | Weighted median | 1.16 | 1.05, 1.28 | 0.005 |
| MR-Egger | 1.23 | 1.01, 1.49 | 0.176 | |
| Cochrane’s Q = 0.97 ( | ||||
| FinnGen | IVW-random effects | 1.06 | 0.95, 1.19 | 0.261 |
| Weighted median | 1.08 | 0.92, 1.26 | 0.467 | |
| Cochrane’s Q = 4.81 ( | ||||
CI, confidence interval; NA, not available; OR, odds ratio. No outlier was detected in MR-PRESSO, analysis in UK Biobank, or FinnGen, and so the estimates from MR-PRESSO were identical to those from the main analysis.
Characteristics of participants in the UK Biobank.
| Characteristic | With gallstones | All participants |
|---|---|---|
| Mean (SD)/N (%) | Mean (SD)/N (%) | |
| N | 16,463 | 339,197 |
| Age, mean (SD) | 58.6 (7.6) | 56.9 (8.0) |
| Female, N (%) | 11,065 (67.2) | 182,072 (53.7) |
| BMI, kg/m2, mean (SD) | 29.72 (5.4) | 27.4 (4.8) |
| SBP, mmHg, mean (SD) | 141.0 (19.4) | 139.0 (18.7) |
| On antihypertensive medications, N (%) | 3,704 (22.5) | 74,507 (22.0) |
| LDL cholesterol, mmol/L, mean (SD) | 3.54 (0.9) | 3.57 (0.9) |
| On lipid-lowering medications, N (%) | 3,202 (19.4) | 63,652 (18.8) |
| HbA1c, mmol/mol, mean (SD) | 37.09 (7.9) | 35.95 (6.5) |
| History of diabetes mellitus, N (%) | 2,573 (15.6) | 26,100 (7.7) |
| On metformin medications, N (%) | 677 (4.1) | 8,207 (2.4) |
| Current smoker, N (%) | 1725 (10.5) | 34,024 (10.0) |
BMI: body mass index; HbA1c: glycated hemoglobin A1c; LDL: low-density lipoprotein; SBP: systolic blood pressure.
Association of genetically predicted growth differentiation factor 15 levels with gallstone disease risk in UK Biobank.
| Overall participants (N = 339,197) | Nondiabetic participants (N = 313,097) | Diabetic participants (N = 26,100) | ||||
|---|---|---|---|---|---|---|
| OR (95%CI) |
| OR (95%CI) |
| OR (95%CI) |
| |
|
| ||||||
| Model 1 | 1.11 (1.03, 1.19) | 0.008 | 1.12 (1.03, 1.22) | 0.005 | 1.04 (0.85, 1.25) | 0.735 |
| Model 2 | 1.11 (1.03, 1.19) | 0.009 | 1.12 (1.03, 1.21) | 0.009 | 1.05 (0.86, 1.28) | 0.617 |
| Model 3 | 1.10 (1.01, 1.19) | 0.027 | 1.11 (1.01, 1.21) | 0.003 | 1.06 (0.85, 1.32) | 0.605 |
|
| ||||||
| Model 1 | 0.85 (0.69, 1.06) | 0.148 | 0.91 (0.68, 1.22) | 0.525 | 0.98 (0.49, 1.98) | 0.970 |
| Model 2 | 0.83 (0.67, 1.03) | 0.084 | 0.88 (0.65, 1.18) | 0.393 | 0.96 (0.47, 1.96) | 0.919 |
| Model 3 | 0.78 (0.61, 0.99) | 0.039 | 0.82 (0.59, 1.13) | 0.228 | 0.84 (0.38, 1.85) | 0.667 |
|
| ||||||
| Model 1 | 1.16 (0.92, 1.47) | 0.218 | 1.24 (1.09, 1.40) | 8.55 × 10–4 | 1.18 (0.87, 1.59) | 0.282 |
| Model 2 | 1.14 (0.90, 1.45) | 0.286 | 1.24 (1.09, 1.41) | 9.04 × 10–4 | 1.24 (0.91, 1.68) | 0.169 |
| Model 3 | 1.09 (0.83, 1.42) | 0.540 | 1.28 (1.90, 1.43) | 0.002 | 1.18 (0.84, 1.64) | 0.330 |
CI, confidence interval; OR, odds ratio.
Model 1: univariate regression model without adjustment for any covariates; Model 2: multivariable regression model with adjustment for basic covariates, including age, sex, BMI, and the first 20 genetic principal components; Model 3: multivariable regression model with adjustment for a comprehensive list of covariates, including age, sex, BMI and the first 20 genetic principal components, deprivation index, smoking, drinking, physical activity, blood LDL-c, levels, blood glucose levels, blood HbA1c levels, and metformin intake.
FIGURE 3Nonlinear regression of association between the polygenic risk scores of growth differentiation factor 15 and gallstones in overall participants (A), nondiabetic participants (B) and diabetic participants (C). Associations were adjusted for a comprehensive list of covariates, including age, sex, BMI and the first 20 genetic principal components, deprivation index, smoking, drinking, physical activity, blood LDL-c levels, blood glucose levels, blood HbA1c levels, and metformin intake.