| Literature DB >> 35769294 |
Alessandro Matese1, Salvatore Filippo Di Gennaro1, Giorgia Orlandi1, Matteo Gatti2, Stefano Poni2.
Abstract
Over the last 50 years, many approaches for extracting plant key parameters from remotely sensed data have been developed, especially in the last decade with the spread of unmanned aerial vehicles (UAVs) in agriculture. Multispectral sensors are very useful for the elaboration of common vegetation indices (VIs), however, the spectral accuracy and range may not be enough. In this scenario, hyperspectral (HS) technologies are gaining particular attention thanks to the highest spectral resolution, which allows deep characterization of vegetative/soil response. Literature presents few papers encompassing UAV-based HS applications in vineyard, a challenging conditions respect to other crops due to high presence of bare soil, grass cover, shadows and high heterogeneity canopy structure with different leaf inclination. The purpose of this paper is to present the first contribution combining traditional and multivariate HS data elaboration techniques, supported by strong ground truthing of vine ecophysiological, vegetative and productive variables. Firstly the research describes the UAV image acquisition and processing workflow to generate a 50 bands HS orthomosaic of a study vineyard. Subsequently, the spectral data extracted from 60 sample vines were elaborated both investigating the relationship between traditional narrowband VIs and grapevine traits. Then, multivariate calibration models were built using a double approach based on Partial Least Square (PLS) regression and interval-PLS (iPLS), to evaluate the correlation performance between the biophysical parameters and HS imagery using the whole spectral range and a selection of more relevant bands applying a variable selection algorithm, respectively. All techniques (VIs, PLS and iPLS) provided satisfactory correlation performances for the ecophysiological (R 2 = 0.65), productive (R 2 = 0.48), and qualitative (R 2 = 0.63) grape parameters. The novelty of this work is represented by the first assessment of a UAV HS dataset with the expression of the entire vine ecosystem, from the physiological and vegetative state to grapes production and quality, using narrowband VIs and multivariate PLS regressions. A correct non-destructive estimation of key parameters in vineyard, above all physiological parameters which must be measured in a short time as they are extremely influenced by the variability of environmental conditions during the day, represents a powerful tool to support the winegrower in vineyard management.Entities:
Keywords: hyperspectral sensing; image segmentation; precision viticulture; unmanned aerial vehicles (UAV); vegetation indices
Year: 2022 PMID: 35769294 PMCID: PMC9235871 DOI: 10.3389/fpls.2022.898722
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 6.627
FIGURE 1Unmanned Aerial Vehicle used in the study equipped with hyperspectral (HS) imaging sensor.
FIGURE 2Location of the experimental vineyard (A) and the Unmanned Aerial System used in the study (B).
FIGURE 3Hyperspectral images processing workflow.
Narrowband vegetation indices calculated from HS dataset.
| Vis | Full name | Spectral band group | Equation |
| NDVI 1 | Normalized difference vegetation index | NIR, VIS | (R850-R660)/(R850 + R660) |
| NDVI 2 | Normalized difference vegetation index | NIR, VIS | (R835-R660)/(R835 + R660) |
| NDVI 3 | Normalized difference vegetation index | NIR, VIS | (R850-R660)/(R850 + R660) |
| GNDVI 1 | Green NDVI | NIR, VIS | (R850-R540)/(R850 + R540) |
| GNDVI 2 | Green NDVI | NIR, VIS | (R780-R550)/(R780 + R550) |
| SAVI | Soil-adjusted vegetation index | NIR, VIS | (1 + 0.5) × (R802-R660)/(R802 + R660 + 0.5) |
| RENDVI | Red edge normalized difference vegetation index | NIR, RE | (R850-R680)/(R850 + R680) |
| NDRE | Normalized difference nir/red edge index | NIR, RE | (R770-R750)/R770 + R750) |
| NRER | Nir-re-red normalized difference vegetation index | NIR, RE, VIS | (R850-R695)/(R695 + R660) |
| TCARI | Transformed chlorophyll absorption ratio | NIR, RE, VIS | 3×[(R695-R663) –0.2(R695-R540) × (R695/R663)] |
| MTVI 1 | Modified triangular vegetation index | NIR, RE, VIS | 1.2× (1.2(R800-R540) –2.5(R660-R540) |
| MTVI 2 | Modified triangular vegetation index | NIR, RE, VIS | 1.2× (1.2(R800-R550) –2.5(R670-R550) |
| EVI | Enhanced vegetation index | NIR, RE, VIS | 2.5× (R850-R660)/(R850 + 6×R660-7.5×R505) + 1 |
| NRER | Nir-re-red normalized difference vegetation index | NIR, RE, VIS | (R850-R695)/(R695 + R660) |
| LCI | Leaf chlorophyll index | NIR, RE, VIS | (R850-R710)/(R850 + R680) |
| MTCIvar | Meris terrestrial chlorophyll index | NIR, RE | (R850-R680)/(R680 + R660) |
| NRI | Nitrogen reflectance index | NIR, RE | (R555-R550)/(R555 + R550) |
| PRI | Photochemical reflectance index | NIR, RE | (R570-R530)/(R570 + R530) |
| SPVI | Spectral polygon vegetation index | NIR, RE, VIS | 0.4× [3.7× (R800-R670) –1.2 (R530-R670)] |
| SR710 | Simple ratio 710 | RE | R750/R710 |
| SR680 | Simple ratio 680 | RE | R800/R680 |
| RVI | Ratio vegetation index | NIR, VIS | R810/R660 |
| VOG1 | Vogelmann index | RE | R745/R720 |
| GM | Gitelson and Merzlyak index | RE, VIS | R750/R550 |
| MNDm | Modified normalized difference | NIR, RE, VIS | [(R750-R705)/(R750 + R705-2× R508)] |
| NDRE2 | Normalized difference nir/red edge index | NIR, RE, VIS | (R795-R720)/(R795 + R720) |
| MCARI2 | Modified chlorophyll absorption in reflectance | NIR, RE, VIS | [(R750-R705) –0.2 (R750-R550) × (R750/R705)] |
| TVI | Triangular vegetation index | NIR, RE, VIS | 0.5× [120× (R750-R550) –200(R670-R550)] |
| EVI2 | Enhanced vegetation indexrep | NIR, RE, VIS | 2.5× (R800-R670)/(R800 + 6×R670-7.5×R508) + 1 |
| REP | Red Edge position index | NIR, RE, VIS | 700 + (45×R670 + R778)/2- (R850)/(R735 –R695) |
| maxR | 1st Derivative Max RED index | dHVI-VIS | Max [D660, D680] |
| sumR | 1st Derivative Sum RED index | dHVI-VIS | Σ [D660, D680] |
| maxRE | 1st Derivative Max RE index | dHVI-RE | Max [D690, D700] |
| sumRE | 1st Derivative Sum RE index | dHVI-RE | Σ [D690, D700] |
| maxLARE | 1st Derivative Max LARE index | dHVI-RE | Max [D690, D710] |
| sumLARE | 1st Derivative Sum LARE index | dHVI-RE | Σ [D690, D710] |
| maxNIR | 1st Derivative Max NIR index | dHVI-NIR | Max [D790, D840] |
| sumNIR | 1st Derivative Sum NIR index | dHVI-NIR | Σ [D790, D840] |
Mean, minimum and maximum values, and coefficient of variation (CV%) for leaf water status, canopy growth, yield components, and fruit composition of Barbera grapevines recorded in 2020.
| Variable | Mean | Min | Max | CV (%) |
| Ψpd (MPa) | –0.5 | –0.27 | –0.73 | 24.2 |
| Ψmd (MPa) | –1.34 | –1.08 | –1.64 | 9.8 |
| Total leaf area (m2/vine) | 1.85 | 0.65 | 3.43 | 33.8 |
| Lateral leaf area (m2/vine) | 0.17 | 0.00 | 0.53 | 77.6 |
| Pruning weight (kg/vine) | 0.48 | 0.16 | 1.07 | 48.7 |
| Yield (kg/vine) | 3.37 | 0.76 | 8.46 | 52.2 |
| Cluster weight (g) | 178.4 | 54.3 | 386.1 | 41.6 |
| Berry weight (g) | 2.0 | 1.3 | 2.8 | 20.2 |
| TSS (°Brix) | 24.4 | 19.0 | 29.3 | 11.4 |
| Titratable acidity (g/L) | 9.66 | 6.58 | 14.41 | 15.8 |
| Malate (g/L) | 2.13 | 0.75 | 5.99 | 56.8 |
| Total anthocyanins (mg/g) | 0.75 | 0.18 | 1.43 | 38.3 |
| Total phenolics (mg/g) | 1.78 | 0.88 | 2.71 | 26.0 |
Coefficients of determination (R2) for linear regressions between narrowband HVIs and ground measurements.
| HVIs | Ψpd | Ψmd | Yield | Cwt | Bwt | TSS | TA | Malate | Anth | Phenols | TLA | LLA | Pwt |
| NDVI1 | 0.6 | 0.23 | 0.3 | 0.34 | 0.47 | 0.2 | 0.29 | 0.57 | 0.36 | 0.43 | 0.22 | 0.27 | 0.23 |
| NDVI2 | 0.6 | 0.25 | 0.28 | 0.32 | 0.48 | 0.19 | 0.3 | 0.58 | 0.37 | 0.42 | 0.22 | 0.27 | 0.19 |
| GNDVI1 | 0.53 | 0.12 | 0.36 | 0.38 | 0.41 | 0.13 | 0.24 | 0.48 | 0.25 | 0.32 | 0.17 | 0.23 | 0.23 |
| RENDVI | 0.52 | 0.12 | 0.29 | 0.31 | 0.41 | 0.12 | 0.21 | 0.47 | 0.28 | 0.34 | 0.15 | 0.25 | 0.22 |
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| 0.58 | 0.2 | 0.32 | 0.35 | 0.48 | 0.18 | 0.29 | 0.58 | 0.36 | 0.43 | 0.18 | 0.26 | 0.23 |
| SAVI | 0.6 | 0.25 | 0.26 | 0.29 | 0.43 | 0.21 | 0.3 | 0.56 | 0.36 | 0.39 | 0.27 | 0.3 | 0.16 |
| TCARI | 0.35 | 0.35 | 0.11 | 0.14 | 0.26 | 0.26 | 0.32 | 0.44 | 0.32 | 0.35 | 0.23 | 0.2 | 0.11 |
| MTVI | 0.6 | 0.28 | 0.23 | 0.26 | 0.41 | 0.22 | 0.32 | 0.58 | 0.38 | 0.4 | 0.27 | 0.31 | 0.16 |
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| 0.62 | 0.28 | 0.24 | 0.27 | 0.41 | 0.25 | 0.34 | 0.61 | 0.4 | 0.45 | 0.24 | 0.33 | 0.23 |
| GNDVI2 | 0.57 | 0.23 | 0.26 | 0.3 | 0.32 | 0.21 | 0.15 | 0.41 | 0.31 | 0.37 | 0.16 | 0.29 | 0.29 |
| NDRE | 0.27 | 0.12 | 0.08 | 0.07 | 0.07 | 0.11 | 0.04 | 0.11 | 0.06 | 0.07 | 0.02 | 0.13 | 0.11 |
| LCI | 0.49 | 0.09 | 0.28 | 0.28 | 0.28 | 0.08 | 0.21 | 0.39 | 0.2 | 0.25 | 0.09 | 0.18 | 0.21 |
| MTVI2 | 0.63 | 0.29 | 0.23 | 0.25 | 0.4 | 0.22 | 0.32 | 0.59 | 0.38 | 0.41 | 0.27 | 0.31 | 0.17 |
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| 0.65 | 0.26 | 0.25 | 0.29 | 0.44 | 0.21 | 0.27 | 0.58 | 0.38 | 0.44 | 0.23 | 0.32 | 0.24 |
| NRI | 0.19 | 0.04 | 0.15 | 0.17 | 0.26 | 0.05 | 0.13 | 0.23 | 0.09 | 0.12 | 0.1 | 0.04 | 0.03 |
| PRI | 0.13 | 0.13 | 0.01 | 0.01 | 0.02 | 0.08 | 0.07 | 0.15 | 0.11 | 0.14 | 0.01 | 0.05 | 0.02 |
| SPVI | 0.63 | 0.28 | 0.23 | 0.26 | 0.4 | 0.21 | 0.31 | 0.58 | 0.37 | 0.39 | 0.27 | 0.32 | 0.17 |
| SR710 | 0.39 | 0.13 | 0.21 | 0.21 | 0.21 | 0.09 | 0.15 | 0.29 | 0.19 | 0.22 | 0.07 | 0.16 | 0.12 |
| SR680 | 0.63 | 0.24 | 0.3 | 0.31 | 0.47 | 0.19 | 0.3 | 0.62 | 0.39 | 0.43 | 0.22 | 0.25 | 0.19 |
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| 0.63 | 0.36 | 0.3 | 0.33 | 0.48 | 0.25 | 0.36 | 0.63 | 0.42 | 0.48 | 0.21 | 0.28 | 0.23 |
| VOG1 | 0.12 | 0.03 | 0.13 | 0.08 | 0.06 | 0.09 | 0.02 | 0.08 | 0.11 | 0.13 | 0 | 0.05 | 0.17 |
| GM | 0.53 | 0.22 | 0.28 | 0.32 | 0.36 | 0.19 | 0.23 | 0.46 | 0.3 | 0.35 | 0.18 | 0.28 | 0.21 |
| MNDm | 0.23 | 0.06 | 0.12 | 0.11 | 0.13 | 0.12 | 0.08 | 0.19 | 0.14 | 0.19 | 0.01 | 0.14 | 0.16 |
| NDRE2 | 0.3 | 0.06 | 0.19 | 0.19 | 0.2 | 0.08 | 0.06 | 0.15 | 0.15 | 0.16 | 0.04 | 0.08 | 0.13 |
| MCARI2 | 0.47 | 0.19 | 0.1 | 0.13 | 0.23 | 0.24 | 0.23 | 0.43 | 0.3 | 0.34 | 0.2 | 0.31 | 0.16 |
| TVI | 0.61 | 0.31 | 0.19 | 0.22 | 0.37 | 0.26 | 0.31 | 0.58 | 0.39 | 0.44 | 0.25 | 0.33 | 0.19 |
| EVI2 | 0.63 | 0.3 | 0.23 | 0.25 | 0.39 | 0.22 | 0.31 | 0.57 | 0.37 | 0.4 | 0.26 | 0.33 | 0.17 |
| REP | 0.4 | 0.1 | 0.14 | 0.17 | 0.28 | 0.13 | 0.08 | 0.3 | 0.19 | 0.24 | 0.18 | 0.24 | 0.12 |
| maxR | 0.08 | 0.09 | 0 | 0 | 0.03 | 0.1 | 0.11 | 0.08 | 0.04 | 0.04 | 0.03 | 0.09 | 0.01 |
| sumR | 0 | 0.05 | 0.04 | 0.05 | 0.07 | 0.08 | 0.1 | 0.07 | 0.05 | 0.04 | 0.08 | 0.06 | 0 |
| maxRE | 0.49 | 0.23 | 0.15 | 0.19 | 0.37 | 0.24 | 0.24 | 0.52 | 0.37 | 0.41 | 0.26 | 0.3 | 0.16 |
| sumRE | 0.52 | 0.28 | 0.14 | 0.18 | 0.36 | 0.21 | 0.23 | 0.53 | 0.36 | 0.4 | 0.3 | 0.28 | 0.15 |
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| 0.59 | 0.26 | 0.19 | 0.2 | 0.34 | 0.31 | 0.34 | 0.56 | 0.4 | 0.43 | 0.24 | 0.34 | 0.2 |
| sumLARE | 0.59 | 0.28 | 0.16 | 0.2 | 0.36 | 0.25 | 0.29 | 0.57 | 0.38 | 0.43 | 0.27 | 0.32 | 0.19 |
| maxNIR | 0.05 | 0 | 0.03 | 0.04 | 0 | 0 | 0.01 | 0.01 | 0 | 0 | 0.02 | 0.04 | 0.01 |
| sumNIR | 0 | 0.04 | 0.01 | 0.01 | 0.01 | 0.03 | 0.03 | 0.01 | 0 | 0.01 | 0.01 | 0 | 0.02 |
Within each column the highest R
***, **, * and () indicate p < 0.0001, < 0.001, < 0.01, and > 0.01, respectively.
Narrowband HVIs reported in the first column are described in
Results of PLS and iPLS models.
| Y | Calibration method | iPLS interval size | Selected Bands (nm) | LVs | RMSEC | RMSECV | ||
| Ψpd | PLS | – | – | 1 | 0.07 | 0.08 | 0.65 | 0.61 |
| iPLS | 10 | 590:704 | 3 | 0.06 | 0.08 | 0.76 | 0.61 | |
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| iPLS | 10 | 590:794 | 1 | 0.10 | 0.11 | 0.33 | 0.18 | |
| iPLS | 5 | 802:835 | 2 | 0.09 | 0.10 | 0.38 | 0.22 | |
| Yield | PLS | – | – | 3 | 1.25 | 1.46 | 0.42 | 0.21 |
| iPLS | 10 | 508:704 | 2 | 1.34 | 1.44 | 0.32 | 0.23 | |
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| Cwt | PLS | – | – | 3 | 0.06 | 0.07 | 0.39 | 0.24 |
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| iPLS | 5 | 508:541 671:704 | 3 | 0.06 | 0.07 | 0.39 | 0.23 | |
| Bwt | PLS | – | – | 3 | 0.28 | 0.32 | 0.53 | 0.38 |
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| iPLS | 5 | 549:753 | 3 | 0.27 | 0.31 | 0.56 | 0.44 | |
| TSS | PLS | – | – | 1 | 2.37 | 2.47 | 0.27 | 0.21 |
| iPLS | 10 | 590:794 | 1 | 2.35 | 2.41 | 0.28 | 0.24 | |
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| TA | PLS | – | – | 1 | 1.27 | 1.36 | 0.31 | 0.21 |
| iPLS | 10 | 508:794 | 1 | 1.29 | 1.35 | 0.29 | 0.21 | |
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| Malate | PLS | – | – | 1 | 0.78 | 0.85 | 0.57 | 0.51 |
| iPLS | 10 | 508:704 | 2 | 0.73 | 0.83 | 0.64 | 0.53 | |
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| Anth | PLS | – | – | 1 | 0.23 | 0.23 | 0.39 | 0.36 |
| iPLS | 10 | 712:794 | 1 | 0.23 | 0.24 | 0.39 | 0.32 | |
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| Phenols | PLS | – | – | 1 | 0.35 | 0.36 | 0.43 | 0.40 |
| iPLS | 10 | 712:794 | 1 | 0.35 | 0.36 | 0.44 | 0.41 | |
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| TLA | PLS | – | – | 1 | 0.55 | 0.56 | 0.07 | 0.04 |
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| iPLS | 5 | 671:704 | 1 | 0.52 | 0.56 | 0.15 | 0.05 | |
| LLA | PLS | – | – | 1 | 0.11 | 0.11 | 0.35 | 0.27 |
| iPLS | 10 | 712:794 | 2 | 0.11 | 0.11 | 0.37 | 0.29 | |
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| iPLS | 10 | 712:794 | 2 | 0.19 | 0.20 | 0.36 | 0.27 | |
| iPLS | 5 | 761:794 | 2 | 0.19 | 0.20 | 0.35 | 0.25 |
Within each Y parameter the best calibration performance is reported in bold.
FIGURE 4Predicted values vs. ground-based measurements of the best calibration performances of multivariate models achieved for each biophysical parameter group: Ψpd for ecophysiological Y [(A), R2 CV = 0.65, RMSECV = 0.07 MPa], Bwt for productive Y [(B), R2 CV = 0.46, RMSECV = 0.30 g], Malate for qualitative Y [(C), R2 CV = 0.59, RMSECV = 0.78 g/L], LLA for vegetative Y [(D), R2 CV = 0.31, RMSECV = 0.11 m2/vine].The dotted line indicates a regression with slope = 1.