Literature DB >> 35766229

Unexpected Isomerization of Oxetane-Carboxylic Acids.

Bohdan Chalyk1,2, Anastasiia Grynyova1, Kateryna Filimonova1, Tymofii V Rudenko1,2, Dmitry Dibchak1, Pavel K Mykhailiuk1.   

Abstract

Many oxetane-carboxylic acids were found to be unstable. They easily isomerized into new (hetero)cyclic lactones while being stored at room temperature or slightly heated. Chemists should keep in mind the high instability of these molecules, as this could dramatically affect the reaction yields and lead to negative results (especially in those reactions that require heating).

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Year:  2022        PMID: 35766229      PMCID: PMC9490830          DOI: 10.1021/acs.orglett.2c01402

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.072


More than a decade ago, oxetanes were given a second life when they were shown to mimic a carbonyl group in bioactive compounds (Scheme ). Moreover, the oxetane fragment was demonstrated to increase water solubility, improve metabolic stability, and lower the lipophilicity of organic molecules.[1] Since that time, oxetanes have been growing in popularity in different areas of chemistry, including organic synthesis, chemical biology, and medicinal chemistry.[2−4] In particular, oxetane-carboxylic acids have been mentioned in >200 peer-reviewed manuscripts and patents as both bioactive compounds[5] and starting materials in synthesis (Scheme ).[6] It is not surprising that during the past few years we have received many requests for their preparation. Some oxetane-carboxylic acids were known in the literature; others needed to be synthesized for the first time. Over time, however, we realized that many oxetane-carboxylic acids were unstable; they easily isomerized into lactones while being stored at room temperature or slightly heated. Here, we want to disclose this previously unknown phenomenon in the literature, as chemists continue to use these molecules (Scheme ) without realizing that many of them are unstable.
Scheme 1

Oxetane-Carboxylic Acids in Organic Synthesis and Medicinal Chemistry (aim of this work)

Intended intramolecular isomerizations of oxetanes by nucleophiles have been reported in the literature (Scheme ).[7,8] In most cases, these reactions required additional activation of the oxetane ring by Lewis acid catalysts (In, Sc, Fe, BF3, Co, Pd, phosphoric acids, etc.). In our case, many oxetane-carboxylic acids easily isomerized while being stored or slightly heated, which required no external catalysis. Previously, we developed an approach to spirocyclic pyrrolidines via [3+2] cycloaddition.[9] As a part of this project, we synthesized several oxetane-carboxylic acids. In particular, alkali saponification of ester 1 followed by acidification with NaHSO4 gave crude acid 1a. At that time, we obtained the pure product 1a by washing the crude material with MeOtBu to remove soluble impurities. Inspection of this product three months later revealed the presence of ∼25% of the individual impurity according to 1H NMR. After storage for one year at room temperature, ∼50% of this impurity was present. Simple heating of this mixture in isopropanol led to the exclusive formation of the “impurity” that was isolated and identified as lactone 1b. At that point, we did not pay much attention to that observation. Several months later, however, we received a request from a pharmaceutical company about the synthesis of oxetane-carboxylic acid 2a (Scheme ). This acid was known in the literature,[6b,10] and scientists often used it in amide coupling.[6b,11] Synthesis of 2a was described in a patent,[10a] and we followed the procedure. Hydrogenation of alkene 2 (obtained in one step from 3-oxetanone) using palladium on charcoal in methanol smoothly gave the desired product 2a. However, an inspection of this product by 1H NMR after 1 week revealed the presence of ∼7% of an impurity. After storage for one month at room temperature, already 16% of this impurity was present. After storage for one year, the compound completely isomerized into the “impurity”. We isolated and identified it as lactone 2b. Moreover, even under slight heating at 50 °C in a dioxane/water mixture, acid 2a cleanly isomerized into lactone 2b. At this point, it became obvious that a tendency of oxetane-carboxylic acids to isomerize into lactones is general. We were very much surprised because while chemists have been actively using oxetane-carboxylic acids (including 2a) in the research (Scheme ), we could not find any systematic studies of that phenomenon. Only one example of such a transformation was found in a patent with no detailed experimental data.[12]
Scheme 2

Unexpected Isomerization of Oxetane-Carboxylic Acids 1a and 2a during Storage at Room Temperature

We decided next to inspect all oxetane-carboxylic acids that we had in stock. Most of these compounds were synthesized by simple saponification of ethyl/methyl esters with NaOH and acidification with NaHSO4. These results are summarized in Scheme . Acids 3a–10a were obtained from esters 3–10, respectively. They were stable while being stored at room temperature, and after one year, we did not observe any decomposition according to 1H NMR. Presumably, bulky (hetero)aromatic substituents (3a–7a), zwitterionic structures (8a and 9a), or a polycyclic conformationally rigid core (10a) stabilized these molecules. Nevertheless, compounds 3a–7a, 9a, and 10a isomerized into lactones 3b–7b, 9b, and 10b, respectively, under heating in a dioxane/water mixture at 100 °C. Zwitterionic acid 8a remained stable. It seems that the high basicity of the imidazole group prevented an intramolecular protonation of the oxetane ring by the carboxylic group (intermediate Int-1 in Scheme ), stabilizing thereby the compound. The strained structure of core 10a led to additional hydrolytic cleavage of the tetrahydrofuran ring. The structure of product 10b was confirmed by crystallographic analysis.[13] Importantly, all isomerizations took place under simple heating with no external activation of the oxetane ring by HCl, HBr, or other Lewis acids.
Scheme 3

Reaction Conditions [group A, dioxane/water (10/1), 100 °C, 12 h; group B, dioxane/water (10/1), 50 °C, 12 h]

Reaction time of 48 h.

Water, 100 °C, 12 h.

iPrOH, 82 °C, 10 h.

Dioxane/water (10/1), 50 °C, 12 h.

21a was obtained from 20a with mCPBA.

Reaction Conditions [group A, dioxane/water (10/1), 100 °C, 12 h; group B, dioxane/water (10/1), 50 °C, 12 h]

Reaction time of 48 h. Water, 100 °C, 12 h. iPrOH, 82 °C, 10 h. Dioxane/water (10/1), 50 °C, 12 h. 21a was obtained from 20a with mCPBA. Next, we examined reaction mixtures after hydrolysis of ethyl esters 1 and 11–19 with NaOH at room temperature and acidification. We were surprised to find out that in all cases, >20% of lactone was already present. Moreover, with each compound that percentage significantly varied from 20% to 70% depending on a synthesis run. Finally, we understood that isomerization must have been taking place during evaporation of the solvent (EtOAc) on a rotary evaporator (extraction of the product after acidification). Even though we typically heated the external water bath at ∼40 °C, it was enough for the cyclization to occur. Indeed, heating of all reaction mixtures after saponification in a dioxane/water mixture at 50 °C smoothly completed the isomerization, and the corresponding pure lactones 1b, 2b, and 11b–19b were obtained (Scheme ). The structure of product 18b was confirmed by crystallographic analysis.[13] Interestingly, in contrast to unstable nonfluorinated analogues, fluorine-containing acids 20a–22a were stable during storage. After one year at room temperature on the shelf, we did not observe their decomposition according to 1H NMR. Presumably, a fluorine atom stabilized compounds by reducing the nucleophilicity of the carboxylate anion in intermediate Int-1 via a negative inductive effect. However, all three acids isomerized into the corresponding lactones 20b–22b under heating at 50 °C in a dioxane/water mixture. Next, we studied the stability of higher homologues of oxetane-carboxylic acids (Scheme ). Acids 23a and 24a (obtained by standard saponification of the corresponding ethyl esters 23 and 24, respectively) with bulky (hetero)aromatic substituents were stable while being stored at room temperature at least for one year. Isomerization of 23 and 24 into valerolactones 23b and 24b, respectively, took place only under prolonged heating in a dioxane/water mixture at 100 °C. The structure of product 23b was confirmed by crystallographic analysis.[13] However, hydrolysis of alkyl ester 25 already gave a mixture of lactone and acid. The same trend was observed with alkyl esters 26–29. The lactone content varied dramatically in each case depending on the synthesis run, indicating again that the cyclization must have been taking place under heating during the evaporation of the solvent. Additional heating of those mixtures in a dioxane/water mixture gave valerolactones 25b and 26b and dioxanones 27b–29b.
Scheme 4

Reaction Conditions [group A, dioxane/water (10/1), 100 °C, 12 h; group B, dioxane/water (10/1), 50 °C, 12 h]

MeOH, reflux, 4 h.

Dioxane/water (10/1), 100 °C, 12 h.

MeOH, 50 °C, 12 days.

Dioxane/water (10/1), 100 °C, 48 h.

Reaction time of 10 days.

Reaction time of 16 days.

Reaction time of 7 days.

Dioxane/water (10/1), 50 °C, 48 h.

Reaction Conditions [group A, dioxane/water (10/1), 100 °C, 12 h; group B, dioxane/water (10/1), 50 °C, 12 h]

MeOH, reflux, 4 h. Dioxane/water (10/1), 100 °C, 12 h. MeOH, 50 °C, 12 days. Dioxane/water (10/1), 100 °C, 48 h. Reaction time of 10 days. Reaction time of 16 days. Reaction time of 7 days. Dioxane/water (10/1), 50 °C, 48 h. Acids 30a–34a with bulky substituents were stable while being stored (Scheme ). Moreover, the heating of acids 33a and 34a in a dioxane/water mixture did not lead to isomerization; both compounds remained intact. Acids 31a and 32a under slight heating, however, gave the corresponding dioxanones 31b and 32b, respectively. It was interesting to discover the dramatically different stability of structurally similar acids 35a and 36a. Pure compound 36a was obtained by saponification of ethyl ester 36 under standard conditions. It was stable while being stored, and heating at 100 °C overnight did not lead to any isomerization. Presumably, intramolecular hydrogen bonding between the N–H and the carbonyl group (36a is a derivative of 2-aminobenzoic acid) “freezes” the conformation and stabilizes thereby the molecule. Ester 35, however, after hydrolysis with NaOH provided an ∼1/1 acid 35a/lactone 35b mixture. Additional heating of this mixture at 50 °C led to the complete isomerization into product 35b. In addition, we also observed similar isomerization from another project. When we treated bromide 37 with tBuLi in THF at −78 °C followed by the addition of dry ice, the crude lithium salt of the corresponding carboxylic acid was obtained (Scheme ). However, careful acidification of the salt with NaHSO4 led to the immediate formation of bicyclic product 37b, which was isolated in 53% yield. Formation of the eliminated alkene was also observed, but expected acid 37a was not present. The innate tendency of oxetane-carboxylic acids to isomerization can be also beneficially used in organic synthesis to prepare novel molecules (Schemes and 4) or to significantly simplify the synthesis of known ones. For example, dioxanone 27b was previously synthesized in four steps (18% total yield) from glycerine (39).[14] Our approach allowed the two-step synthesis (43% total yield) of this product from the commercially available 3-oxetanol (39) (Scheme ). Lactone 12b was previously synthesized in seven steps (10% total yield) from diester 40.[15] In this work, we could obtain this molecule in just four steps from commercially available 3-oxetanone (41). Unsaturated lactone 42 was prepared previously in three steps from triol 43.[16] Here, we could also employ the isomerization strategy to obtain this compound in just two steps from 3-oxetanone (41). In that case, the final hydrolysis and isomerization were performed in one step in aqueous hydrochloric acid.
Scheme 5

Synthesis of Compounds 27b, 12b, and 42 (literature approaches vs our approach)

During the past decade, oxetanes have played an important role in chemistry as bioactive compounds and valuable starting materials in synthesis. Oxetane-carboxylic acids have been used in more than 200 manuscripts and patents (Scheme ). Here, we unexpectedly discovered that many of these molecules were unstable. Some of them isomerized into lactones while being stored at room temperature, and others were being slightly heated. For these acids, we recommend storage of the corresponding esters or Li/Na salts [for most of the unstable acids, we could obtain their salts that could be stored for years at room temperature on the shelf (see the Supporting Information)]. Of course, the tendency of oxetane-carboxylic acids to isomerization can also be beneficially used in the synthesis to make new molecules (Schemes and 4) and to simplify the preparation of the known ones (Scheme ). However, the key message of this work is to inform chemists on the innate instability of many oxetane-carboxylic acids, as this could dramatically lower reaction yields and even lead to negative results (especially in those reactions that require heating).
  27 in total

Review 1.  Oxetanes: Recent Advances in Synthesis, Reactivity, and Medicinal Chemistry.

Authors:  James A Bull; Rosemary A Croft; Owen A Davis; Robert Doran; Kate F Morgan
Journal:  Chem Rev       Date:  2016-09-15       Impact factor: 60.622

2.  An Oxetane-Based Polyketide Surrogate To Probe Substrate Binding in a Polyketide Synthase.

Authors:  Bryan D Ellis; Jacob C Milligan; Alexander R White; Vy Duong; Pilar X Altman; Lina Y Mohammed; Matthew P Crump; John Crosby; Ray Luo; Christopher D Vanderwal; Shiou-Chuan Tsai
Journal:  J Am Chem Soc       Date:  2018-04-10       Impact factor: 15.419

3.  A Direct Synthesis of Highly Substituted π-Rich Aromatic Heterocycles from Oxetanes.

Authors:  Alexander R White; Ryan A Kozlowski; Shiou-Chuan Tsai; Christopher D Vanderwal
Journal:  Angew Chem Int Ed Engl       Date:  2017-07-21       Impact factor: 15.336

4.  Catalytic Enantioselective Synthesis of 1,4-Benzodioxepines.

Authors:  Xi Zou; Guangwu Sun; Hai Huang; Jinping Wang; Wen Yang; Jianwei Sun
Journal:  Org Lett       Date:  2019-12-16       Impact factor: 6.005

5.  Mild Intramolecular Ring Opening of Oxetanes.

Authors:  Lindsey G DeRatt; Edward C Lawson; Chao-Yuan Wang; Scott D Kuduk
Journal:  Org Lett       Date:  2019-11-19       Impact factor: 6.005

6.  Organocatalytic Enantioselective Synthesis of 1,4-Dioxanes and Other Oxa-Heterocycles by Oxetane Desymmetrization.

Authors:  Wen Yang; Jianwei Sun
Journal:  Angew Chem Int Ed Engl       Date:  2015-12-21       Impact factor: 15.336

7.  Discovery of Selective, Orally Bioavailable Pyrazolopyridine Inhibitors of Protein Kinase Cθ (PKCθ) That Ameliorate Symptoms of Experimental Autoimmune Encephalomyelitis.

Authors:  Philip N Collier; Heather C Twin; Ronald M A Knegtel; Dean Boyall; Guy Brenchley; Christopher J Davis; Shazia Keily; Chau Mak; Andrew Miller; Françoise Pierard; Luca Settimo; Clare M Bolton; Peter Chiu; Adam Curnock; Elisabeth Doyle; Adam J Tanner; Juan-Miguel Jimenez
Journal:  ACS Med Chem Lett       Date:  2019-06-27       Impact factor: 4.345

8.  Tandem Amination/Oxetane Ring Opening toward Benzomorpholines.

Authors:  Lindsey G DeRatt; Chao-Yuan Wang; Scott D Kuduk
Journal:  J Org Chem       Date:  2021-11-22       Impact factor: 4.354

Review 9.  Asymmetric Desymmetrization of Oxetanes for the Synthesis of Chiral Tetrahydrothiophenes and Tetrahydroselenophenes.

Authors:  Renwei Zhang; Wengang Guo; Meng Duan; K N Houk; Jianwei Sun
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-23       Impact factor: 15.336

10.  A mild catalytic synthesis of 2-oxazolines via oxetane ring-opening: rapid access to a diverse family of natural products.

Authors:  Hai Huang; Wen Yang; Zuliang Chen; Zengwei Lai; Jianwei Sun
Journal:  Chem Sci       Date:  2019-08-26       Impact factor: 9.825

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