Literature DB >> 35766215

A new method for the sampling and preservation of placental specimens in low-resource settings for the identification of P. falciparum and analysis of nucleic acids.

Patrick S Potoczak1, Beverly I Strassmann1,2, Claudius Vincenz2.   

Abstract

Collection, preservation, and shipment of histological specimens in low-resource settings is challenging. We present a novel method that achieved excellent preservation of placental specimens from rural Mali by using formalin fixation, ethanol dehydration, and long-term storage in a solar-powered freezer. Sample preservation success was 92%, permitting evaluation of current and past malaria infection, anemia, placental maturity, and inflammation. Using RNAscope® hybridization we were able to visualize cell-specific gene expression patterns in the formalin-fixed paraffin-embedded (FFPE) specimens. Additionally, our method entailed mirrored sampling from the two cut faces of a cotyledon, one for the FFPE workflows and the other for storage in RNAlater™ and RNA-seq.

Entities:  

Keywords:  Field-work; RNA-seq; RNAscope®; histology; malaria; placenta

Mesh:

Substances:

Year:  2022        PMID: 35766215      PMCID: PMC9437128          DOI: 10.1080/01478885.2022.2088191

Source DB:  PubMed          Journal:  J Histotechnol        ISSN: 0147-8885            Impact factor:   1.918


  17 in total

1.  RNAscope: a novel in situ RNA analysis platform for formalin-fixed, paraffin-embedded tissues.

Authors:  Fay Wang; John Flanagan; Nan Su; Li-Chong Wang; Son Bui; Allissa Nielson; Xingyong Wu; Hong-Thuy Vo; Xiao-Jun Ma; Yuling Luo
Journal:  J Mol Diagn       Date:  2012-01       Impact factor: 5.568

2.  Cooperation and competition in a cliff-dwelling people.

Authors:  Beverly I Strassmann
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-20       Impact factor: 11.205

3.  Formalin deposition as artifact in biopsies from patients affected by a new variant of endemic pemphigus foliaceus in El Bagre, Colombia, South America.

Authors:  Ana Maria Abreu Velez; Michael S Howard; Marcos Restrepo-Isaza; Bruce Smoller
Journal:  J Cutan Pathol       Date:  2009-12-09       Impact factor: 1.587

4.  ERα Signaling in GHRH/Kiss1 Dual-Phenotype Neurons Plays Sex-Specific Roles in Growth and Puberty.

Authors:  David Garcia-Galiano; Alexandra L Cara; Zachary Tata; Susan J Allen; Martin G Myers; Ernestina Schipani; Carol F Elias
Journal:  J Neurosci       Date:  2020-11-06       Impact factor: 6.167

5.  Optimising sample collection for placental research.

Authors:  G J Burton; N J Sebire; L Myatt; D Tannetta; Y-L Wang; Y Sadovsky; A C Staff; C W Redman
Journal:  Placenta       Date:  2013-11-19       Impact factor: 3.481

6.  Single-cell reconstruction of the early maternal-fetal interface in humans.

Authors:  Roser Vento-Tormo; Mirjana Efremova; Muzlifah Haniffa; Ashley Moffett; Sarah A Teichmann; Rachel A Botting; Margherita Y Turco; Miquel Vento-Tormo; Kerstin B Meyer; Jong-Eun Park; Emily Stephenson; Krzysztof Polański; Angela Goncalves; Lucy Gardner; Staffan Holmqvist; Johan Henriksson; Angela Zou; Andrew M Sharkey; Ben Millar; Barbara Innes; Laura Wood; Anna Wilbrey-Clark; Rebecca P Payne; Martin A Ivarsson; Steve Lisgo; Andrew Filby; David H Rowitch; Judith N Bulmer; Gavin J Wright; Michael J T Stubbington
Journal:  Nature       Date:  2018-11-14       Impact factor: 69.504

7.  Quantitative comparison of immunohistochemical staining intensity in tissues fixed in formalin and Histochoice.

Authors:  D G Vince; A Tbakhi; A Gaddipati; R M Cothren; J F Cornhill; R R Tubbs
Journal:  Anal Cell Pathol       Date:  1997       Impact factor: 2.916

8.  Histomorphological Assessment of Formalin versus Nonformalin Fixatives in Diagnostic Surgical Pathology.

Authors:  Jayaprakash Kubalady Shetty; Hannah Fathima Babu; Kishan Prasad Hosapatna Laxminarayana
Journal:  J Lab Physicians       Date:  2020-12-30

9.  Single cell transcriptional signatures of the human placenta in term and preterm parturition.

Authors:  Roger Pique-Regi; Roberto Romero; Adi L Tarca; Edward D Sendler; Yi Xu; Valeria Garcia-Flores; Yaozhu Leng; Francesca Luca; Sonia S Hassan; Nardhy Gomez-Lopez
Journal:  Elife       Date:  2019-12-12       Impact factor: 8.140

10.  Targeted RNA-seq improves efficiency, resolution, and accuracy of allele specific expression for human term placentas.

Authors:  Weisheng Wu; Jennie L Lovett; Kerby Shedden; Beverly I Strassmann; Claudius Vincenz
Journal:  G3 (Bethesda)       Date:  2021-08-07       Impact factor: 3.154

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