Literature DB >> 35760962

How to make spatial maps of gene activity - down to the cellular level.

Michael Eisenstein.   

Abstract

Entities:  

Keywords:  Computational biology and bioinformatics; Imaging; Transcriptomics

Mesh：

Year:  2022        PMID： 35760962     DOI： 10.1038/d41586-022-01743-7

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  6 in total

1.  Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

Authors:  Patrik L Ståhl; Fredrik Salmén; Sanja Vickovic; Anna Lundmark; José Fernández Navarro; Jens Magnusson; Stefania Giacomello; Michaela Asp; Jakub O Westholm; Mikael Huss; Annelie Mollbrink; Sten Linnarsson; Simone Codeluppi; Åke Borg; Fredrik Pontén; Paul Igor Costea; Pelin Sahlén; Jan Mulder; Olaf Bergmann; Joakim Lundeberg; Jonas Frisén
Journal:  Science       Date:  2016-07-01       Impact factor: 47.728

2.  RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.

Authors:  Kok Hao Chen; Alistair N Boettiger; Jeffrey R Moffitt; Siyuan Wang; Xiaowei Zhuang
Journal:  Science       Date:  2015-04-09       Impact factor: 47.728

3.  Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis.

Authors:  Chang Liu; Rui Li; Young Li; Xiumei Lin; Kaichen Zhao; Qun Liu; Shuowen Wang; Xueqian Yang; Xuyang Shi; Yuting Ma; Chenyu Pei; Hui Wang; Wendai Bao; Junhou Hui; Tao Yang; Zhicheng Xu; Tingting Lai; Michael Arman Berberoglu; Sunil Kumar Sahu; Miguel A Esteban; Kailong Ma; Guangyi Fan; Yuxiang Li; Shiping Liu; Ao Chen; Xun Xu; Zhiqiang Dong; Longqi Liu
Journal:  Dev Cell       Date:  2022-05-04       Impact factor: 12.270

4.  High-resolution 3D spatiotemporal transcriptomic maps of developing Drosophila embryos and larvae.

Authors:  Mingyue Wang; Qinan Hu; Tianhang Lv; Yuhang Wang; Qing Lan; Rong Xiang; Zhencheng Tu; Yanrong Wei; Kai Han; Chang Shi; Junfu Guo; Chao Liu; Tao Yang; Wensi Du; Yanru An; Mengnan Cheng; Jiangshan Xu; Haorong Lu; Wangsheng Li; Shaofang Zhang; Ao Chen; Wei Chen; Yuxiang Li; Xiaoshan Wang; Xun Xu; Yuhui Hu; Longqi Liu
Journal:  Dev Cell       Date:  2022-05-04       Impact factor: 12.270

5.  Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays.

Authors:  Ao Chen; Sha Liao; Mengnan Cheng; Kailong Ma; Liang Wu; Yiwei Lai; Xiaojie Qiu; Jin Yang; Jiangshan Xu; Shijie Hao; Xin Wang; Huifang Lu; Xi Chen; Xing Liu; Xin Huang; Zhao Li; Yan Hong; Yujia Jiang; Jian Peng; Shuai Liu; Mengzhe Shen; Chuanyu Liu; Quanshui Li; Yue Yuan; Xiaoyu Wei; Huiwen Zheng; Weimin Feng; Zhifeng Wang; Yang Liu; Zhaohui Wang; Yunzhi Yang; Haitao Xiang; Lei Han; Baoming Qin; Pengcheng Guo; Guangyao Lai; Pura Muñoz-Cánoves; Patrick H Maxwell; Jean Paul Thiery; Qing-Feng Wu; Fuxiang Zhao; Bichao Chen; Mei Li; Xi Dai; Shuai Wang; Haoyan Kuang; Junhou Hui; Liqun Wang; Ji-Feng Fei; Ou Wang; Xiaofeng Wei; Haorong Lu; Bo Wang; Shiping Liu; Ying Gu; Ming Ni; Wenwei Zhang; Feng Mu; Ye Yin; Huanming Yang; Michael Lisby; Richard J Cornall; Jan Mulder; Mathias Uhlén; Miguel A Esteban; Yuxiang Li; Longqi Liu; Xun Xu; Jian Wang
Journal:  Cell       Date:  2022-05-04       Impact factor: 41.582

6.  Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH.

Authors:  Chee-Huat Linus Eng; Michael Lawson; Qian Zhu; Ruben Dries; Noushin Koulena; Yodai Takei; Jina Yun; Christopher Cronin; Christoph Karp; Guo-Cheng Yuan; Long Cai
Journal:  Nature       Date:  2019-03-25       Impact factor: 49.962
  6 in total

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