| Literature DB >> 35757765 |
Guosheng Yuan1, Fuli Xie2, Yangda Song1, Qi Li1, Rong Li1, Xiaoyun Hu1, Mengya Zang1, Xiao Cheng3, Guanting Lu3, Jing Huang3, Wenzhe Fan4, Xiaoxiang Rong2, Jian Sun1, Jinzhang Chen1.
Abstract
Background: The clinical significance of liver stiffness (LS) measured by shear wave elastography (SWE) in programmed cell death protein-1 (PD-1) inhibitors treated advanced hepatocellular carcinoma (HCC) patients remains unknown. This study aimed to explore the prognostic value of baseline LS by SWE prior to PD-1 inhibitor treatment in combination with lenvatinib.Entities:
Keywords: hepatocellular carcinoma; lenvatinib; pd-1; shear wave elastography; stiffness
Mesh:
Substances:
Year: 2022 PMID: 35757765 PMCID: PMC9218245 DOI: 10.3389/fimmu.2022.868809
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 8.786
Figure 1Patient recruitment flowchart.
Baseline patient characteristics in the training and validation sets.
| Characteristics | All patients (n = 133) | Training set (n = 93) | Validation set (n = 40) |
|
|---|---|---|---|---|
| Age (years) | 53 ± 12 | 54 ± 12 | 51 ± 11 | 0.243 |
| Gender | 0.232 | |||
| Men, n (%) | 116 (87.2) | 79 (84.9) | 37 (92.5) | |
| Women, n (%) | 17 (12.8) | 14 (15.1) | 3 (7.5) | |
| AFP (ng/ml) | 0.807 | |||
| <20 | 57 (42.9) | 39 (41.9) | 18 (45.0) | |
| 20-400 | 24 (18.0) | 16 (17.2) | 8 (20.0) | |
| >400 | 52 (39.1) | 38 (40.9) | 14 (35.0) | |
| ALT (U/L) | 29.0 (5.00, 1048.00) | 26.00 (5.00, 1048.00) | 35.00 (11.00, 125.00) | 0.802 |
| AST (U/L) | 40.50 (9.00, 723.00) | 38.00 (9.00, 723.00) | 52.00(18.00, 324.00) | 0.249 |
| PT (s) | 11.83 ± 1.62 | 11.88 ± 1.80 | 11.69 ± 1.09 | 0.538 |
| ALB (g/L) | 36.32 ± 5.59 | 36.00 ± 5.66 | 37.06 ± 5.36 | 0.287 |
| PLT (109/L) | 160.9 ± 84.8 | 159.92 ± 88.90 | 163.15 ± 75.58 | 0.970 |
| TBIL (µmol/L) | 17.80 ± 10.60 | 16.91 ± 9.59 | 19.59 ± 12.63 | 0.183 |
| BCLC | 0.543 | |||
| B, n (%) | 32 (24.1) | 21 (22.6) | 11 (27.5) | |
| C, n (%) | 101 (75.9) | 72 (77.4) | 29 (72.5) | |
| ECOG performance* | 0.973 | |||
| 0, n (%) | 93 (69.9) | 65 (69.9) | 28 (70.0) | |
| 1, n (%) | 36 (27.1) | 25 (26.9) | 11 (27.5) | |
| 2, n (%) | 4 (3.0) | 3 (3.2) | 1 (2.5) | |
| 3, n (%) | 0 | 0 | 0 | |
| Child-Pugh grade | 0.877 | |||
| A | 114 (85.7) | 80 (86.0) | 34 (85.0) | |
| B | 19 (14.3) | 13 (14.0) | 6 (15.0) | |
| ALBI | -2.29 ± 0.53 | -2.29 ± 0.53 | −2.29 ± 0.51 | 0.984 |
| ALBI grade | 0.662 | |||
| 1, n (%) | 76 (57.1) | 52 (55.9) | 24 (60.0) | |
| 2, n (%) | 57 (42.9) | 41 (44.1) | 16 (40.0) | |
| Tumor number | 0.773 | |||
| <3 nodules, n (%) | 84 (63.2) | 58 (62.4) | 26 (65.0) | |
| ≥3 nodules, n (%) | 49 (36.8) | 35 (37.6) | 14 (35.0) | |
| Tumor size (cm) | 7.41 ± 4.30 | 7.43 ± 4.38 | 7.35 ± 4.16 | 0.922 |
| Embolus | 0.215 | |||
| Absent, n (%) | 74 (55.6) | 55 (59.1) | 19 (47.5) | |
| Present, n (%) | 59 (44.4) | 38 (40.9) | 21 (52.5) | |
| Extrahepatic metastasis | 0.845 | |||
| Absent, n (%) | 105 (78.9) | 73 (78.5) | 32 (80.0) | |
| Present, n (%) | 28 (21.1) | 20 (21.5) | 8 (20.0) | |
| LS value of tumorous foci by SWE (kPa) | 17.49 ± 7.47 | 17.70 ± 7.78 | 16.87 ± 6.68 | 0.557 |
| LS value of adjacent normal liver tissue by SWE (kPa) | 14.32 ± 8.30 | 13.96 ± 8.26 | 15.16 ± 8.44 | 0.409 |
AFP, α-fetoprotein; ALB, albumin; ALBI, albumin-bilirubin; ALT, alanine aminotransferase; AST, aspartate aminotransferase; BCLC, Barcelona Clinic Liver Cancer; ECOG, Eastern Cooperative Oncology Group; LS, liver stiffness; PD-1, programmed cell death protein 1; PLT, platelet count; SWE, shear-wave elastography; PT, prothrombin time; TBIL, total bilirubin.
ALBI score = (log10 bilirubin × 0.66) + (albumin × −0.085). *Fisher’s exact test, others used χ² tests. #Comparison between the validation and training sets.
Tumor responses.
| Tumor response, n (%) | All patients (n = 133) | Training set (n = 93) | Validation set (n = 40) |
|---|---|---|---|
| Complete response (CR) | 1 (0.8) | 1 (1.1) | 0 |
| Partial response (PR) | 30 (22.6) | 19 (20.4) | 11 (27.5) |
| Stable disease (SD) | 65 (48.9) | 46 (49.5) | 19 (47.5) |
| Progressive disease (PD) | 37 (27.8) | 27 (29.0) | 10 (25.0) |
| ORR (CR + PR)* | 31 (23.4) | 20 (21.5) | 11 (27.5) |
| DCR (CR + PR + SD)# | 96 (72.2) | 66 (71.0) | 30 (75.0) |
DCR, disease control rate; ORR, objective response rate.
*Pearson χ² = 0.562, P = 0.453 (ORR comparison between the validation and training sets).
#Pearson χ² = 0.226, P = 0.634 (DCR comparison between the validation and training sets).
Treatment-related adverse events in the training and validation sets.
| Adverse Event | All patients (n = 133) | Training set (n = 93) | Validation set (n = 40) | |||
|---|---|---|---|---|---|---|
| All Grades, n (%) | Grades 3/4, n (%) | All Grades, n (%) | Grades 3/4, n (%) | All Grades, n (%) | Grades 3/4, n (%) | |
| Hepatitis* | 42 (31.6) | 4 (3.0) | 33 (35.5) | 2 (2.2) | 9 (22.5) | 2 (5.0) |
| Abdominal pain | 36 (27.1) | 3 (2.3) | 29 (31.2) | 3 (3.2) | 7 (17.5) | 0 |
| Thrombocytopenia | 36 (27.1) | 1 (0.8) | 25 (26.9) | 0 | 11 (27.5) | 1 (2.5) |
| Diarrhea | 32 (24.1) | 4 (3.0) | 23 (24.7) | 3 (3.2) | 9 (22.5) | 1 (2.5) |
| Hypothyroidism | 31 (23.3) | 4 (3.0) | 25 (26.9) | 2 (2.2) | 6 (15.0) | 2 (5.0) |
| Hypertension | 30 (22.6) | 3 (2.3) | 22 (23.7) | 0 | 8 (20.0) | 3 (7.5) |
| Headache | 29 (21.8) | 2 (1.5) | 19 (20.4) | 2 (2.2) | 10 (25.0) | 0 |
| Fatigue | 25 (18.8) | 0 | 18 (19.4) | 0 | 7 (17.5) | 0 |
| Proteinuria | 24 (18.0) | 3 (2.3) | 18 (19.4) | 1 (1.1) | 6 (15.0) | 2 (5.0) |
| Rash | 22 (16.5) | 4 (3.0) | 19 (20.4) | 3 (3.2) | 3 (7.5) | 1 (2.5) |
| Leukopenia | 14 (10.5) | 0 | 11 (11.8) | 0 | 3 (7.5) | 0 |
| Vomiting | 11 (8.3) | 1 (0.8) | 9 (9.7) | 1 (1.1) | 2 (5.0) | 0 |
| Hoarseness | 6 (4.5) | 0 | 4 (4.3) | 0 | 2 (5.0) | 0 |
| Dental ulcer | 3 (2.3) | 0 | 3 (3.2) | 0 | 0 | 0 |
There was no grade 5 adverse event (death) in any patient.
* Hepatitis was detected by Alanine aminotransferase (ALT) or aspartate aminotransferase (AST) increase.
Univariate and multivariate logistic regression analyses of baseline variables predicting PD in training set (n = 93).
| Factors | Univariate | Multivariate | ||||
|---|---|---|---|---|---|---|
| OR | 95% CI |
| OR | 95% CI |
| |
| Age | 0.981 | 0.945-1.018 | 0.308 | |||
| Gender: Male/Female | 1.439 | 0.434-4.773 | 0.552 | |||
| AFP (ng/mL): | 0.514 | |||||
| <20* | ||||||
| 20-400 | 2.000 | 0.569-7.028 | 0.280 | |||
| >400 | 1.538 | 0.560-4.230 | 0.404 | |||
| ALT (U/L) | 0.998 | 0.992-1.005 | 0.629 | |||
| AST (U/L) | 0.999 | 0.993-1.005 | 0.773 | |||
| PT (s) | 1.053 | 0.814-1.362 | 0.694 | |||
| ALB (g/L) | 1.009 | 0.932-1.093 | 0.829 | |||
| PLT (109/L) | 1.001 | 0.997-1.006 | 0.592 | |||
| TBIL (µmol/L) | 1.002 | 0.957-1.050 | 0.923 | |||
| BCLC stage: B/C | 0.769 | 0.271-2.184 | 0.622 | |||
| ECOG performance: | 0.909 | |||||
| 0* | ||||||
| 1 | 1.229 | 0.452-3.342 | 0.687 | |||
| 2 | 1.306 | 0.111-15.299 | 0.832 | |||
| Child-Pugh: B/A | 1.101 | 0.308-3.936 | 0.882 | |||
| ALBI grade:1/2 | 0.124 | 0.044-0.354 |
| 0.107 | 0.032-0.359 |
|
| Tumor number: ≥3/<3 | 1.857 | 0.746-4.623 | 0.183 | |||
| Tumor size (cm) | 0.938 | 0.841-1.046 | 0.252 | |||
| Embolus: Present/Absent | 1.568 | 0.615-3.998 | 0.347 | |||
| Extrahepatic metastasis: Present/Absent | 1.061 | 0.360-3.132 | 0.914 | |||
| LS value of tumor by SWE (kPa) | 1.139 | 1.063-1.222 |
| 1.148 | 1.064-1.239 |
|
| LS value of adjacent normal liver tissue by SWE (kPa) | 0.999 | 0.946-1.055 | 0.962 | |||
AFP, α-fetoprotein; ALB, albumin; ALBI, albumin-bilirubin; ALT, alanine aminotransferase; AST, aspartate aminotransferase; ECOG, Eastern Cooperative Oncology Group; LS, liver stiffness; PD, Progressive disease; PLT, platelet count; PT, prothrombin time; TBIL, total bilirubin; SWE, shear-wave elastography.
*Used as the reference category.
Bold values are values with statistical differences (P value<0.05).
Figure 2Area under the receiver operating characteristics curves (AUROC) for predicting Progressive Diseases (PD) after therapy with anti–programmed cell death protein 1 (PD-1) plus lenvatinib using baseline liver stiffness (LS) values of tumorous foci. (A) The training set (n = 93) and (B) the validation set (n = 40).
Performance of baseline LS value in predicting PD in training set (n = 93).
| Cut-off values | Sensitivity (%) | 95% CI | Specificity (%) | 95% CI | +LR | -LR |
|---|---|---|---|---|---|---|
| >=3.97 | 100 | 87.2 - 100.0 | 0 | 0.0 - 5.4 | 1 | |
| >3.97 | 100 | 87.2 - 100.0 | 1.52 | 0.04 - 8.2 | 1.02 | 0 |
| >5.07 | 100 | 87.2 - 100.0 | 3.03 | 0.4 - 10.5 | 1.03 | 0 |
| >5.15 | 100 | 87.2 - 100.0 | 4.55 | 0.9 - 12.7 | 1.05 | 0 |
| >5.39 | 100 | 87.2 - 100.0 | 6.06 | 1.7 - 14.8 | 1.06 | 0 |
| >7.21 | 100 | 87.2 - 100.0 | 7.58 | 2.5 - 16.8 | 1.08 | 0 |
| >7.66 | 96.3 | 81.0 - 99.9 | 7.58 | 2.5 - 16.8 | 1.04 | 0.49 |
| >8.17 | 96.3 | 81.0 - 99.9 | 9.09 | 3.4 - 18.7 | 1.06 | 0.41 |
| >8.27 | 96.3 | 81.0 - 99.9 | 10.61 | 4.4 - 20.6 | 1.08 | 0.35 |
| >9.08 | 96.3 | 81.0 - 99.9 | 12.12 | 5.4 - 22.5 | 1.1 | 0.31 |
| >9.19 | 96.3 | 81.0 - 99.9 | 13.64 | 6.4 - 24.3 | 1.12 | 0.27 |
| >9.51 | 96.3 | 81.0 - 99.9 | 15.15 | 7.5 - 26.1 | 1.13 | 0.24 |
| >9.61 | 96.3 | 81.0 - 99.9 | 16.67 | 8.6 - 27.9 | 1.16 | 0.22 |
| >9.72 | 96.3 | 81.0 - 99.9 | 18.18 | 9.8 - 29.6 | 1.18 | 0.2 |
| >10.16 | 96.3 | 81.0 - 99.9 | 19.7 | 10.9 - 31.3 | 1.2 | 0.19 |
| >10.83 | 92.59 | 75.7 - 99.1 | 19.7 | 10.9 - 31.3 | 1.15 | 0.38 |
| >10.94 | 92.59 | 75.7 - 99.1 | 24.24 | 14.5 - 36.4 | 1.22 | 0.31 |
| >11.11 | 92.59 | 75.7 - 99.1 | 25.76 | 15.8 - 38.0 | 1.25 | 0.29 |
| >11.17 | 92.59 | 75.7 - 99.1 | 27.27 | 17.0 - 39.6 | 1.27 | 0.27 |
| >11.29 | 92.59 | 75.7 - 99.1 | 28.79 | 18.3 - 41.3 | 1.3 | 0.26 |
| >11.52 | 92.59 | 75.7 - 99.1 | 30.3 | 19.6 - 42.9 | 1.33 | 0.24 |
| >11.88 | 88.89 | 70.8 - 97.6 | 31.82 | 20.9 - 44.4 | 1.3 | 0.35 |
| >12.2 | 85.19 | 66.3 - 95.8 | 31.82 | 20.9 - 44.4 | 1.25 | 0.47 |
| >12.54 | 85.19 | 66.3 - 95.8 | 33.33 | 22.2 - 46.0 | 1.28 | 0.44 |
| >12.6 | 85.19 | 66.3 - 95.8 | 34.85 | 23.5 - 47.6 | 1.31 | 0.43 |
| >12.76 | 85.19 | 66.3 - 95.8 | 36.36 | 24.9 - 49.1 | 1.34 | 0.41 |
| >13.02 | 85.19 | 66.3 - 95.8 | 37.88 | 26.2 - 50.7 | 1.37 | 0.39 |
| >13.1 | 85.19 | 66.3 - 95.8 | 39.39 | 27.6 - 52.2 | 1.41 | 0.38 |
| >13.23 | 85.19 | 66.3 - 95.8 | 40.91 | 29.0 - 53.7 | 1.44 | 0.36 |
| >13.29 | 85.19 | 66.3 - 95.8 | 42.42 | 30.3 - 55.2 | 1.48 | 0.35 |
| >13.36 | 85.19 | 66.3 - 95.8 | 43.94 | 31.7 - 56.7 | 1.52 | 0.34 |
| >13.74 | 85.19 | 66.3 - 95.8 | 45.45 | 33.1 - 58.2 | 1.56 | 0.33 |
| >14.39 | 85.19 | 66.3 - 95.8 | 46.97 | 34.6 - 59.7 | 1.61 | 0.32 |
| >14.92 | 85.19 | 66.3 - 95.8 | 48.48 | 36.0 - 61.1 | 1.65 | 0.31 |
| >15.05 | 85.19 | 66.3 - 95.8 | 50 | 37.4 - 62.6 | 1.7 | 0.3 |
| >15.23 | 85.19 | 66.3 - 95.8 | 51.52 | 38.9 - 64.0 | 1.76 | 0.29 |
| >15.32 | 85.19 | 66.3 - 95.8 | 53.03 | 40.3 - 65.4 | 1.81 | 0.28 |
| >15.34 | 85.19 | 66.3 - 95.8 | 54.55 | 41.8 - 66.9 | 1.87 | 0.27 |
| >15.35 | 85.19 | 66.3 - 95.8 | 56.06 | 43.3 - 68.3 | 1.94 | 0.26 |
| >15.46 | 85.19 | 66.3 - 95.8 | 57.58 | 44.8 - 69.7 | 2.01 | 0.26 |
| >15.5 | 81.48 | 61.9 - 93.7 | 57.58 | 44.8 - 69.7 | 1.92 | 0.32 |
| >15.87 | 81.48 | 61.9 - 93.7 | 59.09 | 46.3 - 71.0 | 1.99 | 0.31 |
| >16.22 | 81.48 | 61.9 - 93.7 | 60.61 | 47.8 - 72.4 | 2.07 | 0.31 |
| >16.29 | 81.48 | 61.9 - 93.7 | 62.12 | 49.3 - 73.8 | 2.15 | 0.3 |
| >16.64 | 81.48 | 61.9 - 93.7 | 63.64 | 50.9 - 75.1 | 2.24 | 0.29 |
| >16.85 | 81.48 | 61.9 - 93.7 | 66.67 | 54.0 - 77.8 | 2.44 | 0.28 |
| >17.13 | 81.48 | 61.9 - 93.7 | 68.18 | 55.6 - 79.1 | 2.56 | 0.27 |
| >17.14 | 74.07 | 53.7 - 88.9 | 68.18 | 55.6 - 79.1 | 2.33 | 0.38 |
| >18.09 | 74.07 | 53.7 - 88.9 | 69.7 | 57.1 - 80.4 | 2.44 | 0.37 |
| >18.57 | 74.07 | 53.7 - 88.9 | 71.21 | 58.7 - 81.7 | 2.57 | 0.36 |
| >18.6 | 70.37 | 49.8 - 86.2 | 71.21 | 58.7 - 81.7 | 2.44 | 0.42 |
| >19.02 | 70.37 | 49.8 - 86.2 | 72.73 | 60.4 - 83.0 | 2.58 | 0.41 |
| >19.2 | 70.37 | 49.8 - 86.2 | 75.76 | 63.6 - 85.5 | 2.9 | 0.39 |
| >19.35 | 70.37 | 49.8 - 86.2 | 77.27 | 65.3 - 86.7 | 3.1 | 0.38 |
| >19.51 | 70.37 | 49.8 - 86.2 | 78.79 | 67.0 - 87.9 | 3.32 | 0.38 |
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| >19.81 | 66.67 | 46.0 - 83.5 | 80.3 | 68.7 - 89.1 | 3.38 | 0.42 |
| >19.88 | 62.96 | 42.4 - 80.6 | 80.3 | 68.7 - 89.1 | 3.2 | 0.46 |
| >19.94 | 59.26 | 38.8 - 77.6 | 80.3 | 68.7 - 89.1 | 3.01 | 0.51 |
| >20.44 | 51.85 | 31.9 - 71.3 | 80.3 | 68.7 - 89.1 | 2.63 | 0.6 |
| >20.75 | 51.85 | 31.9 - 71.3 | 84.85 | 73.9 - 92.5 | 3.42 | 0.57 |
| >21.07 | 51.85 | 31.9 - 71.3 | 87.88 | 77.5 - 94.6 | 4.28 | 0.55 |
| >22.03 | 48.15 | 28.7 - 68.1 | 87.88 | 77.5 - 94.6 | 3.97 | 0.59 |
| >22.87 | 44.44 | 25.5 - 64.7 | 87.88 | 77.5 - 94.6 | 3.67 | 0.63 |
| >23.02 | 40.74 | 22.4 - 61.2 | 89.39 | 79.4 - 95.6 | 3.84 | 0.66 |
| >23.09 | 40.74 | 22.4 - 61.2 | 90.91 | 81.3 - 96.6 | 4.48 | 0.65 |
| >23.52 | 37.04 | 19.4 - 57.6 | 90.91 | 81.3 - 96.6 | 4.07 | 0.69 |
| >23.86 | 33.33 | 16.5 - 54.0 | 90.91 | 81.3 - 96.6 | 3.67 | 0.73 |
| >25.4 | 33.33 | 16.5 - 54.0 | 92.42 | 83.2 - 97.5 | 4.4 | 0.72 |
| >26.46 | 29.63 | 13.8 - 50.2 | 92.42 | 83.2 - 97.5 | 3.91 | 0.76 |
| >26.64 | 29.63 | 13.8 - 50.2 | 93.94 | 85.2 - 98.3 | 4.89 | 0.75 |
| >26.96 | 25.93 | 11.1 - 46.3 | 93.94 | 85.2 - 98.3 | 4.28 | 0.79 |
| >28.27 | 22.22 | 8.6 - 42.3 | 93.94 | 85.2 - 98.3 | 3.67 | 0.83 |
| >29.14 | 22.22 | 8.6 - 42.3 | 95.45 | 87.3 - 99.1 | 4.89 | 0.81 |
| >29.31 | 22.22 | 8.6 - 42.3 | 96.97 | 89.5 - 99.6 | 7.33 | 0.8 |
| >30.91 | 18.52 | 6.3 - 38.1 | 96.97 | 89.5 - 99.6 | 6.11 | 0.84 |
| >32.08 | 14.81 | 4.2 - 33.7 | 96.97 | 89.5 - 99.6 | 4.89 | 0.88 |
| >33.07 | 14.81 | 4.2 - 33.7 | 98.48 | 91.8 - 100.0 | 9.78 | 0.86 |
| >34.07 | 11.11 | 2.4 - 29.2 | 98.48 | 91.8 - 100.0 | 7.33 | 0.9 |
| >35.29 | 7.41 | 0.9 - 24.3 | 98.48 | 91.8 - 100.0 | 4.89 | 0.94 |
| >36.54 | 3.7 | 0.09 - 19.0 | 98.48 | 91.8 - 100.0 | 2.44 | 0.98 |
| >38.02 | 3.7 | 0.09 - 19.0 | 100 | 94.6 - 100.0 | 0.96 | |
| >39.43 | 0 | 0.0 - 12.8 | 100 | 94.6 - 100.0 | 1 |
LS, Liver stiffness; PD, Progressive disease; CI, confidence Interval; +LR, positive likelihood ratio; -LR, negative likelihood ratio; *: the cut-off value has the highest sum of sensitivity and specificity.
Bold values are values with statistical differences (P value<0.05).
Figure 3Nomogram and Receiver operating characteristic (ROC) curves analysis. (A) Nomogram for predicting probability of Progressive Diseases (PD) after therapy with anti–programmed cell death protein 1 (PD-1) plus lenvatinib. (B) ROC curves for 2 models in the training (left) and validation (right) set. Model based on baseline liver stiffness (LS) values of tumorous foci >19.53 kPa were shown in blue. Nomogram contains both baseline LS of tumorous foci and ALBI grade were shown in red.
Figure 4Calibration curve of the nomogram in the training (A) and validation (B) set. X-axis represents the nomogram predicted probability of Progressive Diseases (PD). Y-axis represents the actual probability of PD, and the diagonal dashed line (represent ideal) indicates the ideal prediction by a perfect model. Results were plotted via bootstrapping with 1000 resamples. The closer the bias-corrected calibration curve (solid line) is to the diagonal line, the higher the prediction accuracy of the model.
Figure 5The decision curve analysis (DCA) for the nomogram in training (A) and validation (B) set. Nomogram contains both baseline LS of tumorous foci and ALBI grade were shown in red. Result showed that using the nomogram for PD prediction has more benefit than the treat-all-patients scheme (gray curve). A larger area under the decision curve suggested a better clinical utility.
Figure 6Biological functions and immune characteristics of tumors with high (n = 5) or low (n = 4) stiffness. (A, B) Heatmap (A) and volcano plot (B) comparing differences in gene expression between tumors with high and low stiffness. (C, D) Heatmap (C) and volcano plot (D) comparing differences in Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways between tumors with high and low stiffness. (E) Boxplots of cell infiltration levels calculated by the Microenvironment Cell Populations-counter among tumors with high and low stiffness. (F) Representative micrographs of CD3 and CD8 protein expression in tumor samples with high and low stiffness, as detected by immunohistochemistry (H1778 was a patient with low stiffness liver tumor, and H1754 was a patient with high stiffness liver tumor). (G) Bar plot showing the enrichment score of each candidate compound in the connectivity map analysis. Compounds are sorted from right to left as the highest to lowest enriched, as assessed using an enrichment analysis. (H) Heatmap showing the mechanisms of the action (rows) of each compound (columns) from the connectivity map analysis. A total of 15 candidate drugs with absolute connectivity scores of <−90 were identified. Among them, 5 were histone deacetylase (HDAC) inhibitors.
Figure 7Validation of the high stiffness signature in TCGA-LIHC and GSE109211 datasets. (A) Boxplots of cell infiltration, as calculated by the Microenvironment Cell Populations-counter (MCP-counter), among tumors with high and low stiffness from The Cancer Genome Atlas Liver Hepatocellular Carcinoma (TCGA-LIHC) cohort. (B, C) Heatmap (B) and volcano plot (C) comparing differences in the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways between tumors with high and low stiffness in the TCGA-LIHC cohort. (D–G) Boxplots of tumor purity (D), intratumoral heterogeneity (ITH) (E), neoantigen (F), and tumor mutation burden (G) in the 4 studied histone modification patterns of the TCGA-LIHC cohort. (H) Kaplan-Meier curves of overall survival in the TCGA-LIHC cohort according to tumor stiffness. (I) Violin plot of the estimated IC50 value of sorafenib and sunitinib calculated based on the Genomics of Drug Sensitivity in Cancer database among tumors with high or low stiffness in the TCGA-LIHC cohort. (J) Boxplots of cell infiltration levels calculated by the MCP-counter among tumors with high and low stiffness in the GSE109211 cohort. (K, L) Heatmap (K) and volcano plot (L) comparing differences in KEGG pathways between tumors with high and low stiffness in the GSE109211 cohort. (M) Bar charts summarizing the proportions of patients with different sorafenib responses across different tumor stiffness groups in the GSE109211 cohort. (N) Receiver operating characteristic curves of treatment response predictions of sorafenib according to the tumor stiffness signature in the GSE109211 cohort. NS means not-siginificant (without statistical difference); *** means p value < 0.001; **** means p value < 0.0001.