Literature DB >> 35756880

Discovery of nonlinear dynamical systems using a Runge-Kutta inspired dictionary-based sparse regression approach.

Pawan Goyal1, Peter Benner1.   

Abstract

In this work, we blend machine learning and dictionary-based learning with numerical analysis tools to discover differential equations from noisy and sparsely sampled measurement data of time-dependent processes. We use the fact that given a dictionary containing large candidate nonlinear functions, dynamical models can often be described by a few appropriately chosen basis functions. As a result, we obtain parsimonious models that can be better interpreted by practitioners, and potentially generalize better beyond the sampling regime than black-box modelling. In this work, we integrate a numerical integration framework with dictionary learning that yields differential equations without requiring or approximating derivative information at any stage. Hence, it is utterly effective for corrupted and sparsely sampled data. We discuss its extension to governing equations, containing rational nonlinearities that typically appear in biological networks. Moreover, we generalized the method to governing equations subject to parameter variations and externally controlled inputs. We demonstrate the efficiency of the method to discover a number of diverse differential equations using noisy measurements, including a model describing neural dynamics, chaotic Lorenz model, Michaelis-Menten kinetics and a parameterized Hopf normal form.
© 2022 The Authors.

Entities:  

Keywords:  dynamical systems; machine learning; sparse regression; system identification

Year:  2022        PMID: 35756880      PMCID: PMC9215218          DOI: 10.1098/rspa.2021.0883

Source DB:  PubMed          Journal:  Proc Math Phys Eng Sci        ISSN: 1364-5021            Impact factor:   3.213


  14 in total

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2.  Identification and control of dynamical systems using neural networks.

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-29       Impact factor: 11.205

6.  The original Michaelis constant: translation of the 1913 Michaelis-Menten paper.

Authors:  Leonor Michaelis; Maud Leonora Menten; Kenneth A Johnson; Roger S Goody
Journal:  Biochemistry       Date:  2011-09-09       Impact factor: 3.162

7.  Discovering governing equations from data by sparse identification of nonlinear dynamical systems.

Authors:  Steven L Brunton; Joshua L Proctor; J Nathan Kutz
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

8.  Equation-free mechanistic ecosystem forecasting using empirical dynamic modeling.

Authors:  Hao Ye; Richard J Beamish; Sarah M Glaser; Sue C H Grant; Chih-Hao Hsieh; Laura J Richards; Jon T Schnute; George Sugihara
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

9.  Predicting catastrophes in nonlinear dynamical systems by compressive sensing.

Authors:  Wen-Xu Wang; Rui Yang; Ying-Cheng Lai; Vassilios Kovanis; Celso Grebogi
Journal:  Phys Rev Lett       Date:  2011-04-15       Impact factor: 9.161

10.  Efficient inference of parsimonious phenomenological models of cellular dynamics using S-systems and alternating regression.

Authors:  Bryan C Daniels; Ilya Nemenman
Journal:  PLoS One       Date:  2015-03-25       Impact factor: 3.240

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  1 in total

1.  Data-driven discovery of the governing equations of dynamical systems via moving horizon optimization.

Authors:  Fernando Lejarza; Michael Baldea
Journal:  Sci Rep       Date:  2022-07-12       Impact factor: 4.996

  1 in total

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