Literature DB >> 35749100

Adversarial Bayesian Optimization for Quantifying Motion Artifact Within MRI.

Anastasia Butskova1, Rain Juhl1, Dženan Zukić2, Aashish Chaudhary2, Kilian M Pohl1,3, Qingyu Zhao1.   

Abstract

Subject motion during an MRI sequence can cause ghosting effects or diffuse image noise in the phase-encoding direction and hence is likely to bias findings in neuroimaging studies. Detecting motion artifacts often relies on experts visually inspecting MRIs, which is subjective and expensive. To improve this detection, we develop a framework to automatically quantify the severity of motion artifact within a brain MRI. We formulate this task as a regression problem and train the regressor from a data set of MRIs with various amounts of motion artifacts. To resolve the issue of missing fine-grained ground-truth labels (level of artifacts), we propose Adversarial Bayesian Optimization (ABO) to infer the distribution of motion parameters (i.e., rotation and translation) underlying the acquired MRI data and then inject synthetic motion artifacts sampled from that estimated distribution into motion-free MRIs. After training the regressor on the synthetic data, we applied the model to quantify the motion level in 990 MRIs collected by the National Consortium on Alcohol and Neurodevelopment in Adolescence. Results show that the motion level derived by our approach is more reliable than the traditional metric based on Entropy Focus Criterion and manually defined binary labels.

Entities:  

Year:  2021        PMID: 35749100      PMCID: PMC9212065          DOI: 10.1007/978-3-030-87602-9_8

Source DB:  PubMed          Journal:  Predict Intell Med


  10 in total

1.  Motion correction and the use of motion covariates in multiple-subject fMRI analysis.

Authors:  Tom Johnstone; Kathleen S Ores Walsh; Larry L Greischar; Andrew L Alexander; Andrew S Fox; Richard J Davidson; Terrence R Oakes
Journal:  Hum Brain Mapp       Date:  2006-10       Impact factor: 5.038

2.  Automatic correction of motion artifacts in magnetic resonance images using an entropy focus criterion.

Authors:  D Atkinson; D L Hill; P N Stoyle; P E Summers; S F Keevil
Journal:  IEEE Trans Med Imaging       Date:  1997-12       Impact factor: 10.048

Review 3.  Motion artifacts in MRI: A complex problem with many partial solutions.

Authors:  Maxim Zaitsev; Julian Maclaren; Michael Herbst
Journal:  J Magn Reson Imaging       Date:  2015-01-28       Impact factor: 4.813

4.  Automated reference-free detection of motion artifacts in magnetic resonance images.

Authors:  Thomas Küstner; Annika Liebgott; Lukas Mauch; Petros Martirosian; Fabian Bamberg; Konstantin Nikolaou; Bin Yang; Fritz Schick; Sergios Gatidis
Journal:  MAGMA       Date:  2017-09-20       Impact factor: 2.310

5.  Adolescent Development of Cortical and White Matter Structure in the NCANDA Sample: Role of Sex, Ethnicity, Puberty, and Alcohol Drinking.

Authors:  Adolf Pfefferbaum; Torsten Rohlfing; Kilian M Pohl; Barton Lane; Weiwei Chu; Dongjin Kwon; B Nolan Nichols; Sandra A Brown; Susan F Tapert; Kevin Cummins; Wesley K Thompson; Ty Brumback; M J Meloy; Terry L Jernigan; Anders Dale; Ian M Colrain; Fiona C Baker; Devin Prouty; Michael D De Bellis; James T Voyvodic; Duncan B Clark; Beatriz Luna; Tammy Chung; Bonnie J Nagel; Edith V Sullivan
Journal:  Cereb Cortex       Date:  2015-09-26       Impact factor: 5.357

6.  Head motion during MRI acquisition reduces gray matter volume and thickness estimates.

Authors:  Martin Reuter; M Dylan Tisdall; Abid Qureshi; Randy L Buckner; André J W van der Kouwe; Bruce Fischl
Journal:  Neuroimage       Date:  2014-12-10       Impact factor: 6.556

7.  The National Consortium on Alcohol and NeuroDevelopment in Adolescence (NCANDA): A Multisite Study of Adolescent Development and Substance Use.

Authors:  Sandra A Brown; Ty Brumback; Kristin Tomlinson; Kevin Cummins; Wesley K Thompson; Bonnie J Nagel; Michael D De Bellis; Stephen R Hooper; Duncan B Clark; Tammy Chung; Brant P Hasler; Ian M Colrain; Fiona C Baker; Devin Prouty; Adolf Pfefferbaum; Edith V Sullivan; Kilian M Pohl; Torsten Rohlfing; B Nolan Nichols; Weiwei Chu; Susan F Tapert
Journal:  J Stud Alcohol Drugs       Date:  2015-11       Impact factor: 2.582

8.  Quality Control of Structural MRI Images Applied Using FreeSurfer-A Hands-On Workflow to Rate Motion Artifacts.

Authors:  Lea L Backhausen; Megan M Herting; Judith Buse; Veit Roessner; Michael N Smolka; Nora C Vetter
Journal:  Front Neurosci       Date:  2016-12-06       Impact factor: 4.677

9.  Automated Detection of Motion Artefacts in MR Imaging Using Decision Forests.

Authors:  Benedikt Lorch; Ghislain Vaillant; Christian Baumgartner; Wenjia Bai; Daniel Rueckert; Andreas Maier
Journal:  J Med Eng       Date:  2017-06-11

10.  TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning.

Authors:  Fernando Pérez-García; Rachel Sparks; Sébastien Ourselin
Journal:  Comput Methods Programs Biomed       Date:  2021-06-17       Impact factor: 5.428

  10 in total

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