| Literature DB >> 35746657 |
Kristina Zguro1, Margherita Baldassarri1,2, Francesca Fava1,2,3, Giada Beligni1,2, Sergio Daga1,2, Roberto Leoncini4, Lucrezia Galasso4, Michele Cirianni4, Stefano Rusconi5,6, Matteo Siano6, Daniela Francisci7, Elisabetta Schiaroli7, Sauro Luchi8, Giovanna Morelli8, Enrico Martinelli9, Massimo Girardis10, Stefano Busani10, Saverio Giuseppe Parisi11, Sandro Panese12, Carmelo Piscopo13, Mario Capasso14,15, Danilo Tacconi16, Chiara Spertilli Raffaelli16, Annarita Giliberti17, Giulia Gori17, Peter D Katsikis18, Maria Lorubbio19, Paola Calzoni4, Agostino Ognibene19, Monica Bocchia20, Monica Tozzi21, Alessandro Bucalossi21, Giuseppe Marotta21, Simone Furini1, Alessandra Renieri1,2,3, Chiara Fallerini1,2.
Abstract
Thrombosis of small and large vessels is reported as a key player in COVID-19 severity. However, host genetic determinants of this susceptibility are still unclear. Congenital Thrombotic Thrombocytopenic Purpura is a severe autosomal recessive disorder characterized by uncleaved ultra-large vWF and thrombotic microangiopathy, frequently triggered by infections. Carriers are reported to be asymptomatic. Exome analysis of about 3000 SARS-CoV-2 infected subjects of different severities, belonging to the GEN-COVID cohort, revealed the specific role of vWF cleaving enzyme ADAMTS13 (A disintegrin-like and metalloprotease with thrombospondin type 1 motif, 13). We report here that ultra-rare variants in a heterozygous state lead to a rare form of COVID-19 characterized by hyper-inflammation signs, which segregates in families as an autosomal dominant disorder conditioned by SARS-CoV-2 infection, sex, and age. This has clinical relevance due to the availability of drugs such as Caplacizumab, which inhibits vWF-platelet interaction, and Crizanlizumab, which, by inhibiting P-selectin binding to its ligands, prevents leukocyte recruitment and platelet aggregation at the site of vascular damage.Entities:
Keywords: ADAMTS13; COVID-19; add-on therapy; thromboembolism
Mesh:
Substances:
Year: 2022 PMID: 35746657 PMCID: PMC9227269 DOI: 10.3390/v14061185
Source DB: PubMed Journal: Viruses ISSN: 1999-4915 Impact factor: 5.818
(a) ADAMTS13 ultra-rare variants correlation with COVID-19 severity in female cohort. (b) ADAMTS13 ultra-rare variants correlation with COVID-19 severity in male cohort.
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| 32 | 454 | 486 |
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| 6 | 283 | 289 |
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| 38 | 737 | 775 (Grand Total) |
| OR = 3.32 (95% CI 1.37 to 8.05); | |||
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| 23 | 649 | 672 |
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| 26 | 526 | 552 |
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| 49 | 1175 | 1224 (Grand Total) |
Note: The correlation was obtained by chi-square test; p-value (severe vs not severe cases), significant at p < 0.05. Severe = adjusted by age category 1; Not severe = adjusted by age category 0.
ADAMTS13 heterozygous mutations in the entire cohort of SARS-CoV-2 positive subjects.
| Nucleotide Change | Amino Acid Change | dbSNP | CADD | ExAC_NFE | Tot. n. Patients | Sex (n.) | Age Range | Hospitalized | Category † |
|---|---|---|---|---|---|---|---|---|---|
| c.11G > A | p.R4H | rs370406676 | 5.2 | 0.0001 | 1 | F | 56 | 1 | 2 |
| c.220C > T | p.R74W | n.a. | 22 | 0.000008 | 1 | M | 39 | 1 | 1 |
| c.241C > T | p.H81Y | rs148644959 | 23 | n.a | 4 | M (2) | 38–60 | 2 | 1 |
| F (2) | 60–68 | 2 | 1 | ||||||
| c.353C > T | p.P118L | rs587698109 | 19.3 | 0.000008 | 1 | F | 59 | 1 | 3 |
| c.559G > C | p.D187H | rs148312697 | 25.6 | 0.0006 | 7 | M(5) | 41–76 | 4 | 3–2 |
| 54 | (1) | 0 | |||||||
| F (2) | 50–82 | 2 | 3–2 | ||||||
| c.649G > A | p.D217N | rs782305581 | 29.4 | 0.00003 | 2 | M(2) | 75 | 1 | 3 |
| 34 | (1) | 0 | |||||||
| c.703G > T | p.D235Y | n.a. | 33 | 0.00004 | 1 | F | 45 | 1 | 2 |
| c.722G > C | p.G241A | n.a. | 8.1 | n.a. | v1 | F | 30 | (1) | 0 |
| c.742G > A | p.V248M | n.a. | 25.1 | 0.00004 | 2 | M | 49–51 | 2 | 3–2 |
| c.953A > G | p.K318R | n.a. | 0.006 | n.a. | 1 | F | 42 | (1) | 0 |
| c.1016C > G | p.T339R | rs149517360 | 22.8 | 0.0004 # | 6 | M | 40 | 1 | 3 |
| F (5) | 9 months-66 | 4 | 2–1 | ||||||
| 23 | (1) | 0 | |||||||
| c.1084G > A | p.V362M | rs781924046 | 0.21 | 0.00001523 | 1 | F | 46 | (1) | 0 |
| c.1117_1121del | p.S373Gfs*15 | n.a | n.a | n.a | 1 | M | 39 | 1 | 1 |
| c.1157G > A | p.R386H | rs151048660 | 11.6 | 0.0003 | 10 | F (5) | 46–82 | 4 | 4–3 |
| 49 | (1) | 0 | |||||||
| M (4) | 42–73 | 4 | 3–2 | ||||||
| c.1178G > A | p.R393Q | rs140937290 | 12.5 | 0.000017 | 1 | M | 68 | 1 | 1 |
| c.1226G > A | p.R409Q | n.a | 35 | n.a. | 1 | M | 48 | 1 | 1 |
| c.1261C > T | p.R421C | rs145825553 | 33 | 0.0008 | 6 | M (6) | 55–81 | 4 | 3–1 |
| 52–65 | (2) | 0 | |||||||
| c.1291G > A | p.E431Q | rs781915989 | 25.8 | 0.000018 | 2 | M | 47 | (1) | 0 |
| F | 75 | (1) | 0 | ||||||
| c.1336A > G | p.M446V | rs782733359 | 16.1 | 0.000022 | 1 | F | 70 | 1 | 3 |
| c.1423C > T | p.P475S | rs11575933 | 4.5 | 0.0006 § | 3 | M (2) | 33 | 1 | 1 |
| 63 | (1) | 0 | |||||||
| F | 1 month | 1 | 1 | ||||||
| c.1463G > A | p.R488Q | rs147201977 | 22.6 | n.a. | 1 | M | 72 | 1 | 5 |
| c.1486A > G | p.M496V | rs782574335 | 0.001 | 0.00004 | 1 | F | 44 | 1 | 1 |
| c.1492C > A | p.R498S | n.a. | 32 | n.a. | 1 | F | 93 | 1 | 2 |
| c.1601G > A | p.G534D | rs782003053 | 26.6 | 0.00005 | 1 | M | 62 | 1 | 2 |
| c.1700C > T | p.A567V | rs782272645 | 27.4 | 0.00007 | 1 | M | 79 | 1 | 2 |
| c.1729A > T | p.T577S | n.a. | 8.6 | n.a. | 1 | F | 33 | 1 | 1 |
| c.1753A > G | p.I585V | n.a. | 0.001 | n.a. | 1 | M | 82 | 1 | 3 |
| c.1808A > G | p.Y603C | rs867154790 | 24.2 | n.a. | 1 | M | 52 | 1 | 1 |
| c.1906C > T | p.R636W | rs201704847 | 24.7 | 0.000008 | 2 | M | 57–62 | 2 | 3–2 |
| c.1931G > A | p.R644H | rs782184721 | 0.011 | 0.00002 | 1 | F | 70 | 1 | 2 |
| c.1976G > A | p.R659K | rs150764227 | 23.5 | 0.0003 | 1 | M | 57 | 1 | 2 |
| c.2009G > A | p.R670H | rs149953167 | 10.7 | 0.0003 | 1 | F | 78 | 1 | 5 |
| c.2011C > A | p.P671T | n.a. | 22.1 | n.a. | 1 | F | 56 | 1 | 3 |
| c.2038C > T | p.P680S | n.a. | 24.3 | n.a. | 1 | M | 76 | 1 | 2 |
| c.2099G > A | p.G700E | n.a. | 31 | n.a. | 1 | M | 25 | 1 | 3 |
| c.2111G > A | p.R704H | rs782223605 | 23.7 | 0.0000008 | 1 | F | 34 | 1 | 3 |
| c.2111G > T | p.R704L | n.a. | 26.2 | n.a. | 1 | M | 68 | 1 | 2 |
| c.2278G > A | p.G760S | rs782729939 | 22.8 | 0.00005 | 1 | F | 57 | 1 | 2 |
| c.2282G > T | p.G761V | n.a. | 25.3 | n.a. | 1 | F | 49 | (1) | 0 |
| c.2288G > A | p.R763Q | rs781804540 | 16.8 | 0.000020 | 1 | M | 60 | 1 | 2 |
| c.2351G > A | p.R784Q | rs377187626 | 4.4 | n.a. | 1 | M | 57 | 1 | 2 |
| c.2420G > C | p.R807T | n.a. | 23.5 | n.a. | 1 | M | 71 | 1 | 2 |
| c.2422C > T | p.W808R | n.a. | 0.007 | n.a. | 1 | M | 50 | (1) | 0 |
| c.2494G > A | p.V832M | rs34104386 | 18.5 | 0.000017 ^ | 2 | M | 28 | 1 | 1 |
| F | 7 months | 1 | 2 | ||||||
| c.2519C > T | p.A840V | n.a. | 0.3 | n.a. | 1 | F | 67 | 1 | 2 |
| c.2545G > A | p.V849I | rs140639242 | 0.4 | 0.0002 | 1 | M | 72 | 1 | 5 |
| c.2773A > G | p.R925G | rs782263547 | 4.1 | 0.000009 | 2 | M | 57–65 | 2 | 4–3 |
| c.2814G > T | p.K938N | n.a. | 25.7 | n.a. | 2 | M | 57–72 | 2 | 4–2 |
| c.2824C > T | p.R942W | rs929435102 | 27.7 | 0.000009 | 2 | M | 61 | (1) | 0 |
| F | 56 | 1 | 2 | ||||||
| c.2828G > A | p.R943Q | rs782160285 | 2.6 | 0.00009 | 1 | M | 84 | 1 | 5 |
| c.2854C > T | p.P952S | rs143568784 | 29.9 | 0.0003 | 5 | M | 68 | 1 | 2 |
| F (4) | 67–85 | 3 | 2 | ||||||
| 40 | (1) | 0 | |||||||
| c.2915G > A | p.R972Q | rs139951127 | 5.4 | 0.0002 | 7 | M (4) | 37–78 | 3 | 3–2 |
| 50 | 1 | 0 | |||||||
| F (3) | 35–70 | 1 | 5–1 | ||||||
| c.2978C > T | p.T993I | rs139808736 | 23.2 | 0.00006 | 1 | M | 57 | 1 | 3 |
| c.3161delC | p.Cys1055Valfs*66 | n.a. | n.a. | n.a. | 1 | F | 54 | 1 | 2 |
| c.3201T > A | p.C1067 * | n.a. | 36 | n.a. | 1 | M | 72 | 1 | 3 |
| c.3356C > T | p.P1119L | rs1044262941 | 36 | 0.000009 | 1 | M | 64 | 1 | 2 |
| c.3463G > A | p.A1155T | n.a. | 1.6 | n.a | 1 | M | 37 | 1 | 2 |
| c.3541G > A | p.G1181R | rs192619276 | 1.5 * | 0.000009 ° | 5 | M (3) | 34–74 | 3 | 3–1 |
| F (2) | 57–66 | 2 | 3–2 | ||||||
| c.3685G > A | p.V1229I | rs587643681 | 2.5 | 0.00001769 | 1 | M | 56 | 1 | 1 |
| c.3694A > T | p.S1232C | n.a. | 23.6 | 0.00001769 | 1 | M | 50 | 1 | 1 |
| c.3713C > T | p.A1238V | rs587697598 | 13.9 | 0.00007986 | 1 | F | 63 | 1 | 3 |
| c.3718G T | p.D1240Y | n.a. | 24.9 | n.a. | 1 | M | 60 | 1 | 2 |
| c.3722T > C | p.M1241T | rs1057522240 | 0.002 | 0.000008 | 1 | F | 46 | 1 | 1 |
| c.3740G > A | p.R1247Q | rs782197792 | 27.2 | 0.00004 | 1 | M | 34 | (1) | 0 |
| c.3826G > A | p.G1276R | rs144808448 | 0.493 | 0.00003 | 1 | M | 62 | 1 | 5 |
| c.3853C > T | p.R1285W | rs370157837 | 27.6 | 0.00002264 | 1 | M | 68 | 1 | 4 |
| c.3956C > T | p.T1319M | rs375824927 | 8.19 | n.a. | 1 | F | 84 | 1 | 2 |
| c.3962A > T | p.N1321I | rs200645384 | 1.248 | 0.00006 | 1 | M | 73 | 1 | 2 |
| c.4007G > A | p.R1336Q | rs782213090 | 23.8 | 0.000008 | 1 | M | 53 | 1 | 2 |
| c.4012G > A | p.A1338T | rs782401854 | 27 | 0.000008 | 1 | M | 60 | 1 | 3 |
| c.4141T > G | p.S1381A | n.a. | 25.6 | n.a. | 1 | F | 29 | (1) | 0 |
| c.4262_4271del | p.G1423Efs*6 | n.a. | n.a. | n.a. | 1 | M | 48 | 1 | 3 |
Note: * mutation already reported as pathogenic in the Clinvar database (https://www.ncbi.nlm.nih.gov/clinvar/ (accessed on 21 April 2022)). # ExAC_SAS = 0.0012; § ExAC_EAS = 0.015, ExAC_AMR = 0.02; ^ ExAC_AFR = 0.013; ° ExAC_EAS = 0.022; † Clinical category: 5, Deceased; 4, Hospitalized and intubated; 3, Hospitalized and CPAP-BiPAP and high-flows oxygen treated; 2, Hospitalized and treated with conventional oxygen support only; 1, Hospitalized without respiratory support; 0, Not hospitalized oligo/asymptomatic individuals. CADD, Combined Annotation Dependent Depletion; ExAC_NFE, Non-Finnish European minor allele frequency.
Figure 1Heterozygous ADAMTS13 ultra-rare variants are related to a reduction of protein detection. Box plot of patients with one ultra-rare variant (6 cases) and patients without ultra-rare variants (5 controls). The presence of ultra-rare variants is associated with a reduction of ADAMTS13 activity (p-value = 0.017 at Mann–Whitney U test).
Correlations between ADAMTS13 ultra-rare variants and laboratory values in hospitalized patients.
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| Ultra-rare variants | Mean | Count | Ultra-rare variants | Mean | Count | Ultra-rare variants | Mean | Count |
| yes | 39 | 64 | yes | 24.5 | 12 | yes | 55.1 | 21 |
| no | 28.5 | 1491 | no | 18.7 | 163 | no | 27.1 | 443 |
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| Ultra-rare variants | Mean | Count | Ultra-rare variants | Mean | Count | Ultra-rare variants | Mean | Count |
| yes | 488 | 25 | yes | 446 | 6 | yes | 502 | 8 |
| no | 502 | 806 | no | 499 | 67 | no | 503 | 234 |
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| Ultra-rare variants | Mean | Count | Ultra-rare variants | Mean | Count | Ultra-rare variants | Mean | Count |
| yes | 3024 | 58 | yes | 4016 | 8 | yes | 4127 | 18 |
| no | 2788 | 1446 | no | 1908 | 148 | no | 2711 | 441 |
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| Ultra-rare variants | Mean | Count | Ultra-rare variants | Mean | Count | Ultra-rare variants | Mean | Count |
| yes | 183 | 63 | yes | 153 | 11 | yes | 182 | 17 |
| no | 315 | 1509 | no | 221 | 184 | no | 574 | 451 |
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| Ultra-rare variants | Mean | Count | Ultra-rare variants | Mean | Count | Ultra-rare variants | Mean | Count |
| yes | 444 | 49 | yes | 513 | 8 | yes | 506 | 16 |
| no | 395 | 1313 | no | 392 | 142 | no | 374 | 389 |
Note: CRP (C-reactive Protein) (mg/dL) highest value among all those collected during hospitalization; normal value <0.5 mg/dL; Fibrinogen (mg/dL) lowest value among all those collected during hospitalization; n.v. 200–400 mg/dL; D-Dimer (ng/mL) highest value among all those collected during hospitalization; n.v. <500 ng/mL; Platelets (103/mmc) lowest value among all those collected during hospitalization; n.v. 150–450 × 103/mmc; LDH (Lactate dehydrogenase) (UI/L) highest value among all those collected during hospitalization; n.v. 135–225 UI/L (male (M)); 135–214 UI/L (female (F)). For the correlations, the Mann-Whitney U test was performed; p-value is significant at p < 0.05. Correlations were performed in hospitalized patients using both sexes (M and F cases), males under 50 years of age (M < 50y cases) and females over 50 years of age (F ≥ 50y cases). Complete laboratory values correlation were included in Supplementary Table S1.
Figure 2Segregation analysis. Pedigree (upper panel) and respective segregation of ADAMTS13 variant and COVID-19 status (lower panel) are shown. Squares represent male family members; circles represent females. A virus cartoon close to the individual symbol indicates individuals infected by SARS-CoV-2 (). The inheritance pattern appears that of an autosomal dominant disorder conditioned by SARS-CoV-2 infection, sex, and age.