| Literature DB >> 35746607 |
Anna S Dolgova1, Marina V Safonova2, Oumar Faye3, Vladimir G Dedkov1,4.
Abstract
The Bunyamwera serological group includes a number of geographically widespread viruses that are related but not identical and have serological cross-reactivity. As the first group members were obtained in the pre-sequencing era, their classifications (group attribution, species differentiation) were originally based on serological reactions. At the same time, the accuracy of the typing in each case depended on the variety of viruses that the researcher had as a comparison panel. With the advent of sequencing techniques, it has become customary to use identity thresholds (nucleotide or amino acid composition) as demarcation criteria for the interspecific differentiation of viral species. Identity thresholds are determined by the International Committee on Taxonomy of Viruses (ICTV) and are regularly reviewed. Similar criteria were established for the Orthobunyavirus genus, which includes members of the Bunyamwera serological group. On the basis of these criteria, the species attributions of some members of the serological group need to be clarified. For this purpose, we analyzed sequences (available in NCBI GenBank) of viruses belonging to the Bunyamwera serological group in order to clarify their phylogenetic positions on the basis of the current demarcation criteria established by the ICTV.Entities:
Keywords: Bunyamwera serogroup; ICTV; Orthobunyavirus genus
Mesh:
Substances:
Year: 2022 PMID: 35746607 PMCID: PMC9227251 DOI: 10.3390/v14061135
Source DB: PubMed Journal: Viruses ISSN: 1999-4915 Impact factor: 5.818
Figure 1Phylogenetic tree of Bunyamwera serological group members based on L segment sequence (amino acid level). The tree was rooted to the genome of the La Crosse virus (EF485032). Alignments of amino acid sequences were performed using MEGA v.11 software using the MUSCLE algorithm. Phylogenetic trees were reconstructed using maximum-likelihood estimation based on the general time-reversible (GTR) parametric model allowing gamma-distributed frequency variation between sites and a proportion of invariant sites in the sequence. The robustness of the tree was tested using 1000 bootstrap replicates. The GTR substitution model evaluated 24 models with various combinations of parameters of nucleotide substitution on the basis of maximum-likelihood fits and selected the best model among them. Attribution to the orthobunyavirus species according to ICTV is indicated by a colored dot. The real attribution to the orthobunyavirus species is indicated by colored highlighting. Isolate source listed as an animal picture.
Figure 2Phylogenetic trees for complete L, M, and S sequences of Bunyamwera serological group members (at the nucleotide level). The attribution to the orthobunyavirus species is indicated by colored highlighting as in Figure 1.