| Literature DB >> 35743313 |
Katarina Stingl1, Britta Baumann2, Pietro De Angeli2, Ajoy Vincent3, Elise Héon3, Monique Cordonnier4, Elfriede De Baere5, Salmo Raskin6, Mario Teruo Sato7,8, Naoye Shiokawa8, Susanne Kohl2, Bernd Wissinger2.
Abstract
Certain combinations of common variants in exon 3 of OPN1LW and OPN1MW, the genes encoding the apo-protein of the long- and middle-wavelength sensitive cone photoreceptor visual pigments in humans, induce splicing defects and have been associated with dyschromatopsia and cone dysfunction syndromes. Here we report the identification of a novel exon 3 haplotype, G-C-G-A-T-T-G-G (referring to nucleotide variants at cDNA positions c.453, c.457, c.465, c.511, c.513, c.521, c.532, and c.538) deduced to encode a pigment with the amino acid residues L-I-V-V-A at positions p.153, p.171, p.174, p.178, and p.180, in OPN1LW or OPN1MW or both in a series of seven patients from four families with cone dysfunction. Applying minigene assays for all observed exon 3 haplotypes in the patients, we demonstrated that the novel exon 3 haplotype L-I-V-V-A induces a strong but incomplete splicing defect with 3-5% of residual correctly spliced transcripts. Minigene splicing outcomes were similar in HEK293 cells and the human retinoblastoma cell line WERI-Rb1, the latter retaining a cone photoreceptor expression profile including endogenous OPN1LW and OPN1MW gene expression. Patients carrying the novel L-I-V-V-A haplotype presented with a mild form of Blue Cone Monochromacy or Bornholm Eye Disease-like phenotype with reduced visual acuity, reduced cone electroretinography responses, red-green color vision defects, and frequently with severe myopia.Entities:
Keywords: Blue Cone Monochromacy; Bornholm Eye Disease; cone photoreceptor LWS and MWS opsin genes; exonic splicing defect; haplotype; minigene assay
Mesh:
Substances:
Year: 2022 PMID: 35743313 PMCID: PMC9224739 DOI: 10.3390/ijms23126868
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 6.208
OPN1LW and OPN1MW exon 3 genotypes in the study group.
| Subject/Proband | ∑ Gene Copies 2 | ||||
|---|---|---|---|---|---|
| BCM363_19041 | G-C-G-A-T-T-G-G | L-I-V-V-A | G-C-G-A-T-T-G-G | L-I-V-V-A | 2 |
| BCM353_31197 | G-C-G-A-T-C-G-T | L-I-A-V-S | G-C-G-A-T-T-G-G | L-I-V-V-A | 2 |
| BCM353_31198 | G-C-G-A-T-C-G-T | L-I-A-V-S | G-C-G-A-T-T-G-G | L-I-V-V-A | 2 |
| ZD569_26825 | G-C-G-A-T-T-G-G | L-I-V-V-A | A-A-C-G-G-T-G-G | M-V-V-V-A | 2 |
| ZD569_26827 | G-C-G-A-T-T-G-G | L-I-V-V-A | A-A-C-G-G-T-G-G | M-V-V-V-A | 2 |
| BCM375_31869 | G-C-G-A-T-T-G-G | L-I-V-V-A | A-A-C-G-G-T-G-G | M-V-V-V-A | 2 |
| BCM375_31870 | G-C-G-A-T-T-G-G | L-I-V-V-A | A-A-C-G-G-T-G-G | M-V-V-V-A | 2 |
1 nt—nucleotides at c.453, c.457, c.465, c.511, c.513, c.521, c.532, and c.538 (references: NM_020061.6 and NM_000513.2), aa—amino acids at p.153, p.171, p.174, p.178, and p.180; 2 sum of OPN1LW and OPN1MW gene copies.
Figure 1OPN1LW and OPN1MW exon 3 genotypes in the study group. Overview of the OPN1LW/OPN1MW gene cluster composition and exon 3 haplotypes in the investigated patients. Exon 3 haplotypes are depicted at the nucleotide sequence level (cDNA sequence positions: c.453-c.457-c.465-c.511-c.513-c.521-c.532-c.538) and the corresponding amino acid residues (at positions p.153-p.171-p.174-p.178-p.180).
Splicing of OPN1LW and OPN1MW exon 3 haplotype minigene constructs in HEK293 and WERI-Rb1 cells.
| Exon 3 Haplotype (nt/aa) | % Correctly Spliced | ||
|---|---|---|---|
| HEK293 1 | WERI-Rb1 1 | ||
| G-C-G-A-T-T-G-G | L-I-V-V-A | 5.28 ± 0.088 | 3.89 ± 0.18 |
| G-C-G-A-T-C-G-T | L-I-A-V-S | 28.36 ± 0.5 | 18.21 ± 0.24 |
| A-A-C-G-G-T-G-G | M-V-V-V-A | 74.41 ± 0.5 | 69.44 ± 0.17 |
| G-C-G-A-T-C-G-G | L-I-A-V-A | 0.00/ndt. | 0.00/ndt. |
| A-A-C-G-G-C-A-T | M-V-A-I-S | 98.12 ± 0.07 | 98.22 ± 0.16 |
1 ndt.—non-detectable.
Figure 2Bioanalyzer separation of RT-PCRs from HEK293 and WERI-Rb1 cells. RT-PCR products obtained with RNA from HEK293 and WERI-Rb1 cells transfected with different exon 3 minigene constructs were separated on a Bioanalyzer DNA-1000 chip. The exonic composition of the products is indicated on the right. RT-PCR products with RNA from non-transfected WERI-Rb1 cells showing expression and correct splicing of endogenous OPN1LW and OPN1MW transcripts were separated in comparison (lanes WERI-Rb1 (LW) and WERI-Rb1 (MW)). Note that different reverse primers were used for amplification of cDNA from minigene transfected cells (i.e., construct-specific reverse primers) and non-transfected WERI-Rb1 cells, which also results in fragment size differences. STD—Size Standard.
Clinical findings including medical history of all patients.
| Patient-ID | Age at Onset 1 | First Symptom | Age (Years) 1 | BCVA 2 (Decimal) | Refraction 2 | Night | Photo- Phobia | Full-Field ERG | Color Test (Farnsworth 15 Hues) | Visual Field | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OD | OS | OD | OS | |||||||||
| ZD569 | not known | no symptoms | 10 | 1.0 | 0.63 | −1.25/−2.5/151 | −0.5/−2.0/180 | no | yes | sctotopic normal, | scotopic, red and green color confusions | III4e borders normal |
| 13 | 1.0 | 0.8 | −7.75/−3.25/21 | −7.0/−33.5/98 | no | yes | photopic very reduced | n.a. | III4e borders normal | |||
| ZD569 | 6 | decreased visual acuity | 8 | 0.4 | 0.5 | −7.5/−4.25/29 | −7.0/−3.75/174 | no | yes | sctotopic normal, photopic very reduced | red and green color confusions | III4e borders normal |
| 11 | 0.8 | 0.6 | −9.5/−4.25/23 | −9.25/−3.25/160 | no | yes | sctotopic normal, photopic very reduced | n.a. | III4e borders normal | |||
| BCM363 | 10 | dyschromatspia in brightness | 14 | 0.4 | 0.4 | emmetropia | no | yes | sctotopic normal, | green color confusions | III4e borders normal | |
| BCM353 | 3 | decreased visual acuity | 6 | 0.3 | 0.4 | −9/−2.5/15 | −9.5/−1/20 | no | no | photopic and flicker reduced, prolonged flicker implicit times | red and green color confusions (desatured test only) | Grossly normal (confrontation perimetry) |
| 11 | 0.4 | 0.5 | −7/−2/140 | −9/−1/145 | no | no | n.a. | red and green color confusions (saturated and desatured test) | relative central scotoma (automated perimetry) | |||
| BCM353 | not known | no symptoms | 4 | 0.4 | 0.4 | +5.5/−1/15 | +4.25/−2/175 | no | no | normal except flicker: reduced and prolonged implicit time | n.a. | n.a. |
| 10 | 0.8 | 0.6 | emmetropia | no | no | n.a. | green-color deficits (Ishihara) | n.a. | ||||
| BCM375 | 4 | decreased visual acuity | 9 | 0.63 | 0.8 | −9.75 | −8.00/+1.00/90 | no | mild hemeralopia | scotopic normal, photopic reduced | strong red and green color deficits | well preserved |
| 15 | 0.5 | 0.8 | −11.50/+1.25/25 | −9.75/+1.00/95 | no | mild photophobia | n.a. | strong red green color deficits | n.a. | |||
| BCM375 | 3 | decreased visual acuity | 7 | 0.25 | 0.16 | −20.00/+1.75/125 | −20.00/+2.00/90 | no | yes | scotopic normal, photopic severyl reduced | moderate red and green color deficits | well preserved |
| 14 | 0.5 | 0.2 | −23.00/+3.00/100 | −24.00/+1.00/90 | no | yes | n.a. | moderate red and green color deficits | n.a. | |||
1 age of onset as well as age of examination is given in years. 2 BCVA (best corrected visual acuity) values are decimal, OD = right eye, OS = left eye, n.a. = data not available.
Figure 3Retinal imaging of the patients with fundus and fundus autofluorescence photography, as well as OCT images. OD = right eye, OS = left eye.